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Lag0038619 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038619
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr2:21724601..21725020
RNA-Seq ExpressionLag0038619
SyntenyLag0038619
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5443019.1 hypothetical protein F2P56_035616, partial [Juglans regia]1.5e-0432.41Show/hide
Query:  DASFHDDKSKCGIGIVIRTKQGNVQAAQNHYASGCQSHLGAEAVAVLSRLQLARNLKVLRLTVLSDCLNMIKSINGQTQGQSSITTTLWDIKAIQDSFEF
        DAS    +S+ G+G+VIR  +G+V A              AEA+A L  + L + L + R+ +  D LN++  IN + +  SS+   + DIKA   + E+
Subjt:  DASFHDDKSKCGIGIVIRTKQGNVQAAQNHYASGCQSHLGAEAVAVLSRLQLARNLKVLRLTVLSDCLNMIKSINGQTQGQSSITTTLWDIKAIQDSFEF

Query:  VNFKFVSR
         + +F+SR
Subjt:  VNFKFVSR

MBA0754064.1 hypothetical protein [Gossypium gossypioides]3.6e-0632.76Show/hide
Query:  GDII-MSIDASFHDDKSKCGIGIVIRTKQGNVQAAQNHYASGCQSHLGAEAVAVLSRLQLARNLKVLRLTVLSDCLNMIKSINGQTQGQSSITTTLWDIK
        GD++ ++ DASF  D ++   G+++R  +G + AA +H          A A A L  +  A +L   ++ V  D L +IK +      +S I+ T+ ++K
Subjt:  GDII-MSIDASFHDDKSKCGIGIVIRTKQGNVQAAQNHYASGCQSHLGAEAVAVLSRLQLARNLKVLRLTVLSDCLNMIKSINGQTQGQSSITTTLWDIK

Query:  AIQDSFEFVNFKFVSR
        A   SFE +NF FVSR
Subjt:  AIQDSFEFVNFKFVSR

XP_016747202.1 uncharacterized protein LOC107955934 [Gossypium hirsutum]1.5e-0431.9Show/hide
Query:  GDII-MSIDASFHDDKSKCGIGIVIRTKQGNVQAAQNHYASGCQSHLGAEAVAVLSRLQLARNLKVLRLTVLSDCLNMIKSINGQTQGQSSITTTLWDIK
        GD++ ++ DASF  D ++   G+++R  +G + AA  H          A A A L  +  A +L   ++ V SD L +IK +      +S I+  + ++K
Subjt:  GDII-MSIDASFHDDKSKCGIGIVIRTKQGNVQAAQNHYASGCQSHLGAEAVAVLSRLQLARNLKVLRLTVLSDCLNMIKSINGQTQGQSSITTTLWDIK

Query:  AIQDSFEFVNFKFVSR
        A   SFE +NF FV R
Subjt:  AIQDSFEFVNFKFVSR

XP_018813588.2 uncharacterized protein LOC108985665 [Juglans regia]1.5e-0432.41Show/hide
Query:  DASFHDDKSKCGIGIVIRTKQGNVQAAQNHYASGCQSHLGAEAVAVLSRLQLARNLKVLRLTVLSDCLNMIKSINGQTQGQSSITTTLWDIKAIQDSFEF
        DAS    +S+ G+G+VIR  +G+V A              AEA+A L  + L + L + R+ +  D LN++  IN + +  SS+   + DIKA   + E+
Subjt:  DASFHDDKSKCGIGIVIRTKQGNVQAAQNHYASGCQSHLGAEAVAVLSRLQLARNLKVLRLTVLSDCLNMIKSINGQTQGQSSITTTLWDIKAIQDSFEF

Query:  VNFKFVSR
         + +F+SR
Subjt:  VNFKFVSR

XP_019102973.1 PREDICTED: uncharacterized protein LOC109133719 [Beta vulgaris subsp. vulgaris]4.0e-0537.62Show/hide
Query:  KSKCGIGIVIRTKQGNVQAAQNHYASGCQSHLGAEAVAVLSRLQLARNLKVLRLTVLSDCLNMIKSINGQTQGQSSITTTLWDIKAIQDSFEFVNFKFVS
        + KCG+G+  R   G+V  A      G  S   AEA A+L  LQ A ++ +  L V SDCLN+IK +NG  + ++     + DI A+ +SF F +F F  
Subjt:  KSKCGIGIVIRTKQGNVQAAQNHYASGCQSHLGAEAVAVLSRLQLARNLKVLRLTVLSDCLNMIKSINGQTQGQSSITTTLWDIKAIQDSFEFVNFKFVS

Query:  R
        R
Subjt:  R

TrEMBL top hitse value%identityAlignment
A0A1U8P7K4 uncharacterized protein LOC1079559347.3e-0531.9Show/hide
Query:  GDII-MSIDASFHDDKSKCGIGIVIRTKQGNVQAAQNHYASGCQSHLGAEAVAVLSRLQLARNLKVLRLTVLSDCLNMIKSINGQTQGQSSITTTLWDIK
        GD++ ++ DASF  D ++   G+++R  +G + AA  H          A A A L  +  A +L   ++ V SD L +IK +      +S I+  + ++K
Subjt:  GDII-MSIDASFHDDKSKCGIGIVIRTKQGNVQAAQNHYASGCQSHLGAEAVAVLSRLQLARNLKVLRLTVLSDCLNMIKSINGQTQGQSSITTTLWDIK

Query:  AIQDSFEFVNFKFVSR
        A   SFE +NF FV R
Subjt:  AIQDSFEFVNFKFVSR

A0A2I4E2F9 uncharacterized protein LOC1089856657.3e-0532.41Show/hide
Query:  DASFHDDKSKCGIGIVIRTKQGNVQAAQNHYASGCQSHLGAEAVAVLSRLQLARNLKVLRLTVLSDCLNMIKSINGQTQGQSSITTTLWDIKAIQDSFEF
        DAS    +S+ G+G+VIR  +G+V A              AEA+A L  + L + L + R+ +  D LN++  IN + +  SS+   + DIKA   + E+
Subjt:  DASFHDDKSKCGIGIVIRTKQGNVQAAQNHYASGCQSHLGAEAVAVLSRLQLARNLKVLRLTVLSDCLNMIKSINGQTQGQSSITTTLWDIKAIQDSFEF

Query:  VNFKFVSR
         + +F+SR
Subjt:  VNFKFVSR

A0A2I4HHS4 uncharacterized protein LOC1090217411.6e-0434.26Show/hide
Query:  DASFHDDKSKCGIGIVIRTKQGNVQAAQNHYASGCQSHLGAEAVAVLSRLQLARNLKVLRLTVLSDCLNMIKSINGQTQGQSSITTTLWDIKAIQDSFEF
        DAS     S+ G+G+VIR  +G V A      S       AEA+A L  + L + L + R+ +  D LN++  IN +T+  SS    + DIKA   + E+
Subjt:  DASFHDDKSKCGIGIVIRTKQGNVQAAQNHYASGCQSHLGAEAVAVLSRLQLARNLKVLRLTVLSDCLNMIKSINGQTQGQSSITTTLWDIKAIQDSFEF

Query:  VNFKFVSR
         + +F+SR
Subjt:  VNFKFVSR

A0A7J9D0K6 RNase H domain-containing protein1.7e-0632.76Show/hide
Query:  GDII-MSIDASFHDDKSKCGIGIVIRTKQGNVQAAQNHYASGCQSHLGAEAVAVLSRLQLARNLKVLRLTVLSDCLNMIKSINGQTQGQSSITTTLWDIK
        GD++ ++ DASF  D ++   G+++R  +G + AA +H          A A A L  +  A +L   ++ V  D L +IK +      +S I+ T+ ++K
Subjt:  GDII-MSIDASFHDDKSKCGIGIVIRTKQGNVQAAQNHYASGCQSHLGAEAVAVLSRLQLARNLKVLRLTVLSDCLNMIKSINGQTQGQSSITTTLWDIK

Query:  AIQDSFEFVNFKFVSR
        A   SFE +NF FVSR
Subjt:  AIQDSFEFVNFKFVSR

A0A7J9LZD0 RNase H domain-containing protein1.2e-0430.17Show/hide
Query:  GDII-MSIDASFHDDKSKCGIGIVIRTKQGNVQAAQNHYASGCQSHLGAEAVAVLSRLQLARNLKVLRLTVLSDCLNMIKSINGQTQGQSSITTTLWDIK
        GD++ ++ DASF  D ++   G+++R  +G + AA  H          A A A L  + +A +L   ++ V  D L + K +      +S I+  + ++K
Subjt:  GDII-MSIDASFHDDKSKCGIGIVIRTKQGNVQAAQNHYASGCQSHLGAEAVAVLSRLQLARNLKVLRLTVLSDCLNMIKSINGQTQGQSSITTTLWDIK

Query:  AIQDSFEFVNFKFVSR
        A   SFE +NF FV R
Subjt:  AIQDSFEFVNFKFVSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGGATCGATGGATCAGTCGAAGGAAGATGTTAACAAAATTATCTCAGAAGGTGGAGATATCATCATGAGTATTGATGCATCTTTTCATGATGATAAGTCCAAATG
TGGTATCGGCATAGTAATACGCACTAAACAAGGAAATGTTCAGGCAGCTCAGAATCATTATGCTTCAGGTTGTCAATCCCATCTGGGCGCTGAAGCTGTAGCTGTTCTGT
CAAGGCTGCAATTAGCGAGGAATTTGAAGGTGTTGAGATTAACGGTTCTTTCTGACTGCTTGAACATGATAAAATCTATAAATGGTCAGACACAAGGGCAGTCAAGTATA
ACTACGACATTATGGGACATTAAAGCAATTCAAGACTCTTTTGAGTTTGTAAACTTTAAGTTTGTTAGTCGTCGACGTGTTCGCTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGGATCGATGGATCAGTCGAAGGAAGATGTTAACAAAATTATCTCAGAAGGTGGAGATATCATCATGAGTATTGATGCATCTTTTCATGATGATAAGTCCAAATG
TGGTATCGGCATAGTAATACGCACTAAACAAGGAAATGTTCAGGCAGCTCAGAATCATTATGCTTCAGGTTGTCAATCCCATCTGGGCGCTGAAGCTGTAGCTGTTCTGT
CAAGGCTGCAATTAGCGAGGAATTTGAAGGTGTTGAGATTAACGGTTCTTTCTGACTGCTTGAACATGATAAAATCTATAAATGGTCAGACACAAGGGCAGTCAAGTATA
ACTACGACATTATGGGACATTAAAGCAATTCAAGACTCTTTTGAGTTTGTAAACTTTAAGTTTGTTAGTCGTCGACGTGTTCGCTCATAA
Protein sequenceShow/hide protein sequence
MGGSMDQSKEDVNKIISEGGDIIMSIDASFHDDKSKCGIGIVIRTKQGNVQAAQNHYASGCQSHLGAEAVAVLSRLQLARNLKVLRLTVLSDCLNMIKSINGQTQGQSSI
TTTLWDIKAIQDSFEFVNFKFVSRRRVRS