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Lag0038628 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038628
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr2:21856594..21859257
RNA-Seq ExpressionLag0038628
SyntenyLag0038628
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]3.1e-1849.57Show/hide
Query:  MDIHGASDATKCRAFSLTLIEMARQWFSKLSRKSIGSFKELSQVFVTQFLRARDRGKPQFSLLTIKQKPRESLNGYLICFSNEVLQVERCDDGVALTAVI
        MDI+G S+A KCR FS TL   AR WF +L R SI SFK L++ FVTQF+  R R +P   LLTIKQ+  ESL+ Y+  F+ E LQVE   + V+L A +
Subjt:  MDIHGASDATKCRAFSLTLIEMARQWFSKLSRKSIGSFKELSQVFVTQFLRARDRGKPQFSLLTIKQKPRESLNGYLICFSNEVLQVERCDDGVALTAVI

Query:  SGFRRNVLG---GVETP
        S  R   L    G +TP
Subjt:  SGFRRNVLG---GVETP

XP_022158344.1 uncharacterized protein LOC111024851 [Momordica charantia]4.0e-1844.83Show/hide
Query:  DIHGASDATKCRAFSLTLIEMARQWFSKLSRKSIGSFKELSQVFVTQFLRARDRGKPQFSLLTIKQKPRESLNGYLICFSNEVLQVERCDDGVALTAVIS
        DI+   +A +CR FS TL   AR WF +L R SI SFKEL++ FVTQF+  R + KP   LLTIKQK  ESL  Y+  F+ E LQVE   D VAL A +S
Subjt:  DIHGASDATKCRAFSLTLIEMARQWFSKLSRKSIGSFKELSQVFVTQFLRARDRGKPQFSLLTIKQKPRESLNGYLICFSNEVLQVERCDDGVALTAVIS

Query:  GFRRNVL---GGVETP-ILPKAIDR-QNVLGRVETPILSKAIDRQ
        G +   L    G  TP    +A+ R Q  +   E   LS+ ++R+
Subjt:  GFRRNVL---GGVETP-ILPKAIDR-QNVLGRVETPILSKAIDRQ

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]3.1e-1850.43Show/hide
Query:  MDIHGASDATKCRAFSLTLIEMARQWFSKLSRKSIGSFKELSQVFVTQFLRARDRGKPQFSLLTIKQKPRESLNGYLICFSNEVLQVERCDDGVALTAVI
        MDI+G S+A +CR FS TL   AR WF +L R SI SFK L++ FVTQF+  R R +P   LLTIKQ+  ESL  Y+  F+ E LQVE   D V+L A +
Subjt:  MDIHGASDATKCRAFSLTLIEMARQWFSKLSRKSIGSFKELSQVFVTQFLRARDRGKPQFSLLTIKQKPRESLNGYLICFSNEVLQVERCDDGVALTAVI

Query:  SGFRRNVLG---GVETP
        SG R   L    G  TP
Subjt:  SGFRRNVLG---GVETP

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]6.8e-1851.92Show/hide
Query:  MDIHGASDATKCRAFSLTLIEMARQWFSKLSRKSIGSFKELSQVFVTQFLRARDRGKPQFSLLTIKQKPRESLNGYLICFSNEVLQVERCDDGVALTAVI
        MDI+G SDA +CR FS TL   AR WF +L R SI SFK L++ F+TQF+  R R +P   LLTIKQ+  ESL+ Y+  F+ E LQ+E   D V+L A +
Subjt:  MDIHGASDATKCRAFSLTLIEMARQWFSKLSRKSIGSFKELSQVFVTQFLRARDRGKPQFSLLTIKQKPRESLNGYLICFSNEVLQVERCDDGVALTAVI

Query:  SGFR
        SG R
Subjt:  SGFR

XP_024041095.1 uncharacterized protein LOC112098853 [Citrus clementina]1.8e-1847.22Show/hide
Query:  MDIHGASDATKCRAFSLTLIEMARQWFSKLSRKSIGSFKELSQVFVTQFLRARDRGKPQFSLLTIKQKPRESLNGYLICFSNEVLQVERCDDGVALTAVI
        M++ GAS A  CRAF LTL+  AR+WF +L   SI SF +LS+ F + F  AR RGKP   LLT+KQ+  E+L  Y+  ++NE+ QV+  DDG+AL+ ++
Subjt:  MDIHGASDATKCRAFSLTLIEMARQWFSKLSRKSIGSFKELSQVFVTQFLRARDRGKPQFSLLTIKQKPRESLNGYLICFSNEVLQVERCDDGVALTAVI

Query:  SGFRRNVL
         G R   L
Subjt:  SGFRRNVL

TrEMBL top hitse value%identityAlignment
A0A6J1D3B7 uncharacterized protein LOC1110166191.3e-1751.46Show/hide
Query:  DIHGASDATKCRAFSLTLIEMARQWFSKLSRKSIGSFKELSQVFVTQFLRARDRGKPQFSLLTIKQKPRESLNGYLICFSNEVLQVERCDDGVALTAVIS
        DI+G ++A +CR FS TL    R WF +L RKSI SFKEL++ FVTQF    +R +P   LLTIKQK  ESL  Y+  F+ E LQVE   D V L   IS
Subjt:  DIHGASDATKCRAFSLTLIEMARQWFSKLSRKSIGSFKELSQVFVTQFLRARDRGKPQFSLLTIKQKPRESLNGYLICFSNEVLQVERCDDGVALTAVIS

Query:  GFR
        G +
Subjt:  GFR

A0A6J1D7D2 uncharacterized protein LOC1110183071.5e-1849.57Show/hide
Query:  MDIHGASDATKCRAFSLTLIEMARQWFSKLSRKSIGSFKELSQVFVTQFLRARDRGKPQFSLLTIKQKPRESLNGYLICFSNEVLQVERCDDGVALTAVI
        MDI+G S+A KCR FS TL   AR WF +L R SI SFK L++ FVTQF+  R R +P   LLTIKQ+  ESL+ Y+  F+ E LQVE   + V+L A +
Subjt:  MDIHGASDATKCRAFSLTLIEMARQWFSKLSRKSIGSFKELSQVFVTQFLRARDRGKPQFSLLTIKQKPRESLNGYLICFSNEVLQVERCDDGVALTAVI

Query:  SGFRRNVLG---GVETP
        S  R   L    G +TP
Subjt:  SGFRRNVLG---GVETP

A0A6J1DWY0 uncharacterized protein LOC1110252931.5e-1850.43Show/hide
Query:  MDIHGASDATKCRAFSLTLIEMARQWFSKLSRKSIGSFKELSQVFVTQFLRARDRGKPQFSLLTIKQKPRESLNGYLICFSNEVLQVERCDDGVALTAVI
        MDI+G S+A +CR FS TL   AR WF +L R SI SFK L++ FVTQF+  R R +P   LLTIKQ+  ESL  Y+  F+ E LQVE   D V+L A +
Subjt:  MDIHGASDATKCRAFSLTLIEMARQWFSKLSRKSIGSFKELSQVFVTQFLRARDRGKPQFSLLTIKQKPRESLNGYLICFSNEVLQVERCDDGVALTAVI

Query:  SGFRRNVLG---GVETP
        SG R   L    G  TP
Subjt:  SGFRRNVLG---GVETP

A0A6J1DZ49 uncharacterized protein LOC1110248511.9e-1844.83Show/hide
Query:  DIHGASDATKCRAFSLTLIEMARQWFSKLSRKSIGSFKELSQVFVTQFLRARDRGKPQFSLLTIKQKPRESLNGYLICFSNEVLQVERCDDGVALTAVIS
        DI+   +A +CR FS TL   AR WF +L R SI SFKEL++ FVTQF+  R + KP   LLTIKQK  ESL  Y+  F+ E LQVE   D VAL A +S
Subjt:  DIHGASDATKCRAFSLTLIEMARQWFSKLSRKSIGSFKELSQVFVTQFLRARDRGKPQFSLLTIKQKPRESLNGYLICFSNEVLQVERCDDGVALTAVIS

Query:  GFRRNVL---GGVETP-ILPKAIDR-QNVLGRVETPILSKAIDRQ
        G +   L    G  TP    +A+ R Q  +   E   LS+ ++R+
Subjt:  GFRRNVL---GGVETP-ILPKAIDR-QNVLGRVETPILSKAIDRQ

A0A6J1E1E7 uncharacterized protein LOC1110255483.3e-1851.92Show/hide
Query:  MDIHGASDATKCRAFSLTLIEMARQWFSKLSRKSIGSFKELSQVFVTQFLRARDRGKPQFSLLTIKQKPRESLNGYLICFSNEVLQVERCDDGVALTAVI
        MDI+G SDA +CR FS TL   AR WF +L R SI SFK L++ F+TQF+  R R +P   LLTIKQ+  ESL+ Y+  F+ E LQ+E   D V+L A +
Subjt:  MDIHGASDATKCRAFSLTLIEMARQWFSKLSRKSIGSFKELSQVFVTQFLRARDRGKPQFSLLTIKQKPRESLNGYLICFSNEVLQVERCDDGVALTAVI

Query:  SGFR
        SG R
Subjt:  SGFR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACATCCATGGGGCTTCAGATGCAACCAAGTGCCGAGCCTTTTCCTTAACCTTAATCGAGATGGCACGACAGTGGTTCAGCAAATTATCACGGAAGTCCATAGGATC
TTTCAAAGAATTGTCACAAGTTTTTGTCACGCAGTTTCTTAGGGCAAGAGATCGGGGAAAACCTCAATTCAGCCTGTTGACAATCAAGCAGAAACCTAGGGAAAGTTTGA
ATGGATACCTTATTTGCTTTAGTAACGAAGTATTGCAGGTAGAAAGATGCGATGATGGGGTAGCTCTAACTGCCGTTATCTCAGGTTTCAGAAGAAATGTTCTTGGTGGA
GTGGAAACCCCAATACTACCCAAGGCAATCGACAGGCAAAATGTCCTTGGTAGAGTGGAAACCCCAATACTCTCCAAGGCAATCGACAGACAAAATGTCCTTGGTGGAGT
GGAAACCCCAATACTCCTCAAGGCAATCGACAGGCAAAATGTCCTTGGTAGAGTGGAAACCCCAATACTCTCCAAGGTAATCGGCAGGCAAAATGTCTTTGGTGGAGTGG
AAACCCCAATACTCCCCAAGACAATCGACAGGCAAAATGTACTTGGTGGAGTGAAAACCTCAATACTCCCCAAGGCAATCGACAAACAAAAAGTCCTTGGTAAAGTGGAA
ACCCTTATACTCTCCAAGGCAATTGACAGTCAAAGTGTTCTAGGTGGAATGGAGTTGTCAATGTTCTCCATCACCCCAAGGTACTCGGTGTGTGGCCAGCAAGAGTCGAG
GTCGAGGTTTAGGCCAACTCATACCAATGGAGAAAATGCACGTGCAATAAAAACTCAAAGGGATAGGGTCAAGGCCGACCAGGCCATGCCCATACCTTGTTTCTGTTGGA
ATGTCACTATTTGGGGGGCTTTAAAACAGAGGAGTGAAATGAAGAAATGGGAAGGAGACGTCCAAAAGAAAGGCACAAGGGCTCAGAATCCTGAGGCCGAGGCCGAGGCT
CGTCTAGTTGTAATTCTAGACCATTTCGAAATTCAAGGAGCAGACGAGGACCACACAACACGACAACGAAGACTCGTCCAGGAAATAGACCCCAGAGGAGAAATAGGTCA
TAGGGTTGGGTCAAGGCCAAAGAGATTGGGCTTGGCCCAACCCCACGCTCGGCCTCGGCCCGTGTGGTCGGCCGAGTCTCCTCCCCTTTGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACATCCATGGGGCTTCAGATGCAACCAAGTGCCGAGCCTTTTCCTTAACCTTAATCGAGATGGCACGACAGTGGTTCAGCAAATTATCACGGAAGTCCATAGGATC
TTTCAAAGAATTGTCACAAGTTTTTGTCACGCAGTTTCTTAGGGCAAGAGATCGGGGAAAACCTCAATTCAGCCTGTTGACAATCAAGCAGAAACCTAGGGAAAGTTTGA
ATGGATACCTTATTTGCTTTAGTAACGAAGTATTGCAGGTAGAAAGATGCGATGATGGGGTAGCTCTAACTGCCGTTATCTCAGGTTTCAGAAGAAATGTTCTTGGTGGA
GTGGAAACCCCAATACTACCCAAGGCAATCGACAGGCAAAATGTCCTTGGTAGAGTGGAAACCCCAATACTCTCCAAGGCAATCGACAGACAAAATGTCCTTGGTGGAGT
GGAAACCCCAATACTCCTCAAGGCAATCGACAGGCAAAATGTCCTTGGTAGAGTGGAAACCCCAATACTCTCCAAGGTAATCGGCAGGCAAAATGTCTTTGGTGGAGTGG
AAACCCCAATACTCCCCAAGACAATCGACAGGCAAAATGTACTTGGTGGAGTGAAAACCTCAATACTCCCCAAGGCAATCGACAAACAAAAAGTCCTTGGTAAAGTGGAA
ACCCTTATACTCTCCAAGGCAATTGACAGTCAAAGTGTTCTAGGTGGAATGGAGTTGTCAATGTTCTCCATCACCCCAAGGTACTCGGTGTGTGGCCAGCAAGAGTCGAG
GTCGAGGTTTAGGCCAACTCATACCAATGGAGAAAATGCACGTGCAATAAAAACTCAAAGGGATAGGGTCAAGGCCGACCAGGCCATGCCCATACCTTGTTTCTGTTGGA
ATGTCACTATTTGGGGGGCTTTAAAACAGAGGAGTGAAATGAAGAAATGGGAAGGAGACGTCCAAAAGAAAGGCACAAGGGCTCAGAATCCTGAGGCCGAGGCCGAGGCT
CGTCTAGTTGTAATTCTAGACCATTTCGAAATTCAAGGAGCAGACGAGGACCACACAACACGACAACGAAGACTCGTCCAGGAAATAGACCCCAGAGGAGAAATAGGTCA
TAGGGTTGGGTCAAGGCCAAAGAGATTGGGCTTGGCCCAACCCCACGCTCGGCCTCGGCCCGTGTGGTCGGCCGAGTCTCCTCCCCTTTGCTAG
Protein sequenceShow/hide protein sequence
MDIHGASDATKCRAFSLTLIEMARQWFSKLSRKSIGSFKELSQVFVTQFLRARDRGKPQFSLLTIKQKPRESLNGYLICFSNEVLQVERCDDGVALTAVISGFRRNVLGG
VETPILPKAIDRQNVLGRVETPILSKAIDRQNVLGGVETPILLKAIDRQNVLGRVETPILSKVIGRQNVFGGVETPILPKTIDRQNVLGGVKTSILPKAIDKQKVLGKVE
TLILSKAIDSQSVLGGMELSMFSITPRYSVCGQQESRSRFRPTHTNGENARAIKTQRDRVKADQAMPIPCFCWNVTIWGALKQRSEMKKWEGDVQKKGTRAQNPEAEAEA
RLVVILDHFEIQGADEDHTTRQRRLVQEIDPRGEIGHRVGSRPKRLGLAQPHARPRPVWSAESPPLC