CuGenDBv2

Gene ID	Lag0038630
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Ribonuclease P
Genome location	chr2:21875650..21877949
RNA-Seq Expression	Lag0038630
Synteny	Lag0038630
Gene Ontology terms	GO:0001682 - tRNA 5'-leader removal (biological process) GO:0006364 - rRNA processing (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0000172 - ribonuclease MRP complex (cellular component) GO:0005655 - nucleolar ribonuclease P complex (cellular component) GO:0004526 - ribonuclease P activity (molecular function) GO:0016491 - oxidoreductase activity (molecular function) GO:0016874 - ligase activity (molecular function)
InterPro domains	IPR002759 - RNase P subunit Pop5/Rpp14/Rnp2-like IPR038085 - RNase P subunit Pop5/Rpp14/Rnp2-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004139703.1 probable ribonuclease P/MRP protein subunit POP5 [Cucumis sativus]

1.3e-33

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Query:  QVMYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNIRACRNTASRLDELMFKRYKLMVGPHLSD-VNLQMHNCLEKIRRLD
        QV YVNPITK+CIIRASREDYQNVWAAITMVR+ISNCPVVFNLLDLSGN RAC+NTA RL+ L F++YKLMVG +L D VNLQM NCLEKI  L+
Subjt:  QVMYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNIRACRNTASRLDELMFKRYKLMVGPHLSD-VNLQMHNCLEKIRRLD

XP_022932062.1 probable ribonuclease P/MRP protein subunit POP5 [Cucurbita moschata]

4.5e-37

85.26

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Query:  QVMYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNIRACRNTASRLDELMFKRYKLMVGPHLSD-VNLQMHNCLEKIRRLD
        QV YVNPITKLCIIRASREDYQNVWAAITMVR+ISNCPVVFNLLDL+GN RAC+NTA RLDEL F++YKLMVGP +SD VNLQM NCLEKIR LD
Subjt:  QVMYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNIRACRNTASRLDELMFKRYKLMVGPHLSD-VNLQMHNCLEKIRRLD

XP_022972913.1 probable ribonuclease P/MRP protein subunit POP5 [Cucurbita maxima]

9.9e-37

84.21

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Query:  QVMYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNIRACRNTASRLDELMFKRYKLMVGPHLSD-VNLQMHNCLEKIRRLD
        QV YVNPITKLCIIRASREDYQNVWAAITMVR+ISNCPVVFNLLDL+GN RAC+NTA R+DEL F++YKLMVGP +SD VNLQM NCLEKIR LD
Subjt:  QVMYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNIRACRNTASRLDELMFKRYKLMVGPHLSD-VNLQMHNCLEKIRRLD

XP_023524475.1 probable ribonuclease P/MRP protein subunit POP5 [Cucurbita pepo subsp. pepo]

9.0e-38

85.26

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Query:  QVMYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNIRACRNTASRLDELMFKRYKLMVGPHLSD-VNLQMHNCLEKIRRLD
        QV YVNPITKLCIIRASREDYQNVWAAITMVR+ISNCPVVFNLLDL+GN RAC+NTA R+DEL F++YKLMVGP++SD VNLQMHNCLEKIR LD
Subjt:  QVMYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNIRACRNTASRLDELMFKRYKLMVGPHLSD-VNLQMHNCLEKIRRLD

XP_038899949.1 probable ribonuclease P/MRP protein subunit POP5 [Benincasa hispida]

5.5e-35

83.16

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Query:  QVMYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNIRACRNTASRLDELMFKRYKLMVGPHLSD-VNLQMHNCLEKIRRLD
        QV YVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGN RAC+NTA RLD+L F++YKLMVG  L D VNLQM NCLEKI  L+
Subjt:  QVMYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNIRACRNTASRLDELMFKRYKLMVGPHLSD-VNLQMHNCLEKIRRLD

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CEI9 Ribonuclease P

9.4e-33

78.95

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Query:  QVMYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNIRACRNTASRLDELMFKRYKLMVGPHLSD-VNLQMHNCLEKIRRLD
        QV YVNPITKLCIIRASREDYQNVWAAITMVR+ISNCPVVFNLLDLSGN RAC+NTA RLD L F++YKLMVG  L D V + M NCLEKI  L+
Subjt:  QVMYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNIRACRNTASRLDELMFKRYKLMVGPHLSD-VNLQMHNCLEKIRRLD

A0A5D3CDD4 Ribonuclease P

2.5e-33

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Query:  QVMYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNIRACRNTASRLDELMFKRYKLMVGPHLSD-VNLQMHNCLEKIRRLD
        QV YVNPITKLCIIRASREDYQNVWAAITMVR+ISNCPVVFNLLDLSGN RAC+NTA RLD L F++YKLMVG  L D V +QM NCLEKI  L+
Subjt:  QVMYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNIRACRNTASRLDELMFKRYKLMVGPHLSD-VNLQMHNCLEKIRRLD

A0A6J1CLH1 Ribonuclease P

5.5e-33

77.89

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Query:  QVMYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNIRACRNTASRLDELMFKRYKLMVGPHLS-DVNLQMHNCLEKIRRLD
        QV YVNPITKLCIIR S+EDYQ VWAAITMVRTI NCPV+FNLLDL+GN RAC+NTA R +EL F++YKLMVG  LS DVNLQM NCLEKIR  D
Subjt:  QVMYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNIRACRNTASRLDELMFKRYKLMVGPHLS-DVNLQMHNCLEKIRRLD

A0A6J1EVL4 Ribonuclease P

2.2e-37

85.26

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Query:  QVMYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNIRACRNTASRLDELMFKRYKLMVGPHLSD-VNLQMHNCLEKIRRLD
        QV YVNPITKLCIIRASREDYQNVWAAITMVR+ISNCPVVFNLLDL+GN RAC+NTA RLDEL F++YKLMVGP +SD VNLQM NCLEKIR LD
Subjt:  QVMYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNIRACRNTASRLDELMFKRYKLMVGPHLSD-VNLQMHNCLEKIRRLD

A0A6J1IBH7 Ribonuclease P

4.8e-37

84.21

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Query:  QVMYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNIRACRNTASRLDELMFKRYKLMVGPHLSD-VNLQMHNCLEKIRRLD
        QV YVNPITKLCIIRASREDYQNVWAAITMVR+ISNCPVVFNLLDL+GN RAC+NTA R+DEL F++YKLMVGP +SD VNLQM NCLEKIR LD
Subjt:  QVMYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNIRACRNTASRLDELMFKRYKLMVGPHLSD-VNLQMHNCLEKIRRLD

SwissProt top hits

e value

%identity

Alignment

Q54EP3 Probable ribonuclease P/MRP protein subunit POP5

6.5e-07

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Query:  QVMYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNIRACRNTASRL
        +++YVNP T + IIR S E Y+++W A+T++ +    P+ F ++ + G+IR C+  A ++
Subjt:  QVMYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNIRACRNTASRL

Q6AWV1 Probable ribonuclease P/MRP protein subunit POP5

3.6e-21

53.68

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Query:  QVMYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNIRACRNTASRLDELMFKRYKLMVGPHLSDVNL-QMHNCLEKIRRLD
        QV YVNPITKLCI+R+SRE+++ VW AIT+V++I NCPV+ NLLD+SG IRACR+TA + D+  F++        LS+  + QM+  LEKI+ L+
Subjt:  QVMYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNIRACRNTASRLDELMFKRYKLMVGPHLSDVNL-QMHNCLEKIRRLD

Arabidopsis top hits

e value

%identity

Alignment

AT1G04635.1 ribonuclease P family protein / Rpp14 family protein

2.5e-22

53.68

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Query:  QVMYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNIRACRNTASRLDELMFKRYKLMVGPHLSDVNL-QMHNCLEKIRRLD
        QV YVNPITKLCI+R+SRE+++ VW AIT+V++I NCPV+ NLLD+SG IRACR+TA + D+  F++        LS+  + QM+  LEKI+ L+
Subjt:  QVMYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNIRACRNTASRLDELMFKRYKLMVGPHLSDVNL-QMHNCLEKIRRLD

Sequences

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CDS sequence

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ATGCTTCGTCGAGATTGCTTGCTATTGCAATCCTCTTTACTTCCTTCACGAACTGGATTCTGCTTCATCTTCGATCCCCAAGTTATGTATGTAAATCCAATCACGAAGTT
GTGTATTATTAGAGCCTCGAGAGAGGACTACCAAAATGTCTGGGCTGCAATTACCATGGTGAGGACTATCAGCAATTGCCCTGTTGTATTTAATCTACTGGACCTAAGTG
GAAATATAAGGGCTTGCAGAAACACTGCCTCGAGGCTGGATGAATTGATGTTTAAGCGATACAAGCTTATGGTTGGACCTCATCTCTCTGATGTCAATCTGCAAATGCAC
AACTGTCTTGAGAAGATTAGAAGATTAGACGTCTAG

mRNA sequence

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Protein sequence

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MLRRDCLLLQSSLLPSRTGFCFIFDPQVMYVNPITKLCIIRASREDYQNVWAAITMVRTISNCPVVFNLLDLSGNIRACRNTASRLDELMFKRYKLMVGPHLSDVNLQMH
NCLEKIRRLDV

Lag0038630 (gene) of Sponge gourd (AG-4) v1 genome