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Lag0038668 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038668
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr2:22900910..22902554
RNA-Seq ExpressionLag0038668
SyntenyLag0038668
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7569782.1 Ribonuclease H domain [Arabidopsis thaliana x Arabidopsis arenosa]5.0e-2061.54Show/hide
Query:  MANFWWEGLEESRQIHWMSWESMCLPKCMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRYFRNFRFLEA
        MA+FWW   E SR +HW+SWE +CLPKC GGLGF ++ LFNQALLAKQ WRI   P  LL G ++K RYF    FLEA
Subjt:  MANFWWEGLEESRQIHWMSWESMCLPKCMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRYFRNFRFLEA

XP_013709367.1 uncharacterized protein LOC106413079 [Brassica napus]6.5e-2035.71Show/hide
Query:  MANFWWEGLEESRQIHWMSWESMCLPKCMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRYFRNFRFLEA----------------------
        M++FWW  +E+  +IHW+ W+S+CLPK +GGLGF ++E FNQALLA Q W++   P+SL+   VLK RYF N  FLEA                      
Subjt:  MANFWWEGLEESRQIHWMSWESMCLPKCMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRYFRNFRFLEA----------------------

Query:  ----ELSNEYALHV---------------HSFPTLPLTSRVKDLFT-ESGQWDGEKLRNHFTAADCEV
            E+ N  +L V                  P + L  +V DL   E+G+W+ E L  +F   D E+
Subjt:  ----ELSNEYALHV---------------HSFPTLPLTSRVKDLFT-ESGQWDGEKLRNHFTAADCEV

XP_018465308.1 PREDICTED: uncharacterized protein LOC108836684 [Raphanus sativus]2.9e-2058.54Show/hide
Query:  MANFWWEGLEESRQIHWMSWESMCLPKCMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRYFRNFRFLEAELSN
        MA+FWW  +E  R+IHWM W+ +CLP+ +GGLGF N++ FNQALLAKQCWRI   P+SLL  L LK RYF +  FLEA++ +
Subjt:  MANFWWEGLEESRQIHWMSWESMCLPKCMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRYFRNFRFLEAELSN

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]4.4e-2437.36Show/hide
Query:  ANFWWEGLEESRQIHWMSWESMCLPKCMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRYFRNFRFLEAELS--------------------
        A FWW   +E ++IHW++W S+ LPKC GG+GF ++ELFN+ALLAKQCWRI + P+S+L   VLKGRYF++  F+EA++S                    
Subjt:  ANFWWEGLEESRQIHWMSWESMCLPKCMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRYFRNFRFLEAELS--------------------

Query:  --------------------NEYALHVHSFPTLPLTSRVKDLFT-ESGQWDGEKLRNHFTAADCEVFQMAVKPSGGPTEGRL
                            N+  L + S P LPL SRV  L   E G W G+ +R+ FT  + +   +++    G  E RL
Subjt:  --------------------NEYALHVHSFPTLPLTSRVKDLFT-ESGQWDGEKLRNHFTAADCEVFQMAVKPSGGPTEGRL

XP_022159057.1 uncharacterized protein LOC111025497 [Momordica charantia]3.9e-2543.12Show/hide
Query:  MANFWWEGLEESRQIHWMSWESMCLPKCMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRYFRNFRFLEAELSNEYA---------------
        MA FWW   +   +IHW+SW+ MCL KCMGGLGF ++E FNQALLAKQ W+IFS+PSSLL   VLK +YF+N  F+EA + +  +               
Subjt:  MANFWWEGLEESRQIHWMSWESMCLPKCMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRYFRNFRFLEAELSNEYA---------------

Query:  -------------------------LHVHSFPTLPLTSRVKDLFTESGQWDGEKLRNHFT
                                 L V S P+LP  S V+D +T SGQWD +KLR HF+
Subjt:  -------------------------LHVHSFPTLPLTSRVKDLFTESGQWDGEKLRNHFT

TrEMBL top hitse value%identityAlignment
A0A6D2HN47 Reverse transcriptase domain-containing protein1.6e-1958.54Show/hide
Query:  MANFWWEGLEESRQIHWMSWESMCLPKCMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRYFRNFRFLEAELSN
        MA+FWW   E SR+IHW SWE +CLPKC+GG+GF ++ LFNQALLAKQ WRI   P+SL+  + LK RYF    FL   L N
Subjt:  MANFWWEGLEESRQIHWMSWESMCLPKCMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRYFRNFRFLEAELSN

A0A6J0LZV2 uncharacterized protein LOC1088366841.4e-2058.54Show/hide
Query:  MANFWWEGLEESRQIHWMSWESMCLPKCMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRYFRNFRFLEAELSN
        MA+FWW  +E  R+IHWM W+ +CLP+ +GGLGF N++ FNQALLAKQCWRI   P+SLL  L LK RYF +  FLEA++ +
Subjt:  MANFWWEGLEESRQIHWMSWESMCLPKCMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRYFRNFRFLEAELSN

A0A6J1DAR4 uncharacterized protein LOC1110189542.1e-2437.36Show/hide
Query:  ANFWWEGLEESRQIHWMSWESMCLPKCMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRYFRNFRFLEAELS--------------------
        A FWW   +E ++IHW++W S+ LPKC GG+GF ++ELFN+ALLAKQCWRI + P+S+L   VLKGRYF++  F+EA++S                    
Subjt:  ANFWWEGLEESRQIHWMSWESMCLPKCMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRYFRNFRFLEAELS--------------------

Query:  --------------------NEYALHVHSFPTLPLTSRVKDLFT-ESGQWDGEKLRNHFTAADCEVFQMAVKPSGGPTEGRL
                            N+  L + S P LPL SRV  L   E G W G+ +R+ FT  + +   +++    G  E RL
Subjt:  --------------------NEYALHVHSFPTLPLTSRVKDLFT-ESGQWDGEKLRNHFTAADCEVFQMAVKPSGGPTEGRL

A0A6J1DYS7 uncharacterized protein LOC1110254971.9e-2543.12Show/hide
Query:  MANFWWEGLEESRQIHWMSWESMCLPKCMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRYFRNFRFLEAELSNEYA---------------
        MA FWW   +   +IHW+SW+ MCL KCMGGLGF ++E FNQALLAKQ W+IFS+PSSLL   VLK +YF+N  F+EA + +  +               
Subjt:  MANFWWEGLEESRQIHWMSWESMCLPKCMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRYFRNFRFLEAELSNEYA---------------

Query:  -------------------------LHVHSFPTLPLTSRVKDLFTESGQWDGEKLRNHFT
                                 L V S P+LP  S V+D +T SGQWD +KLR HF+
Subjt:  -------------------------LHVHSFPTLPLTSRVKDLFTESGQWDGEKLRNHFT

A0A803PKA4 Uncharacterized protein3.7e-2132.74Show/hide
Query:  MANFWWEGLEESRQIHWMSWESMCLPKCMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRYFRNFRFLEAE------------------LSN
        M+NFWW    + ++IHW  W+ +C  K  GGLGF N   FNQALLAKQ WR+F  P+SLL   VLKGRYF    FL A                   L  
Subjt:  MANFWWEGLEESRQIHWMSWESMCLPKCMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRYFRNFRFLEAE------------------LSN

Query:  EYALHVHSFPTLPLTSRVKDLFTESGQWDGEKLRN--------------HFTAADCEVFQMAVKPSGGPTEGRLSLGIRGGRPMWNPPLENELKLNVDTS
           L V  + T      +  L  +    D E++                H T  DC +  +A  P+G PT           R +W PP    LKLNVD +
Subjt:  EYALHVHSFPTLPLTSRVKDLFTESGQWDGEKLRN--------------HFTAADCEVFQMAVKPSGGPTEGRLSLGIRGGRPMWNPPLENELKLNVDTS

Query:  VKPDSCLTGGGLILRNDSLRLVKILN
            S   G G I+R+ + +++  ++
Subjt:  VKPDSCLTGGGLILRNDSLRLVKILN

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657506.1e-0537.88Show/hide
Query:  FWWEGLEESRQIHWMSWESMCLPKCMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRY
        F W    E ++ H + W  +C PK  GGLG    +  N+AL++K  WR+  E +S L  LVL+ +Y
Subjt:  FWWEGLEESRQIHWMSWESMCLPKCMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRY

P93295 Uncharacterized mitochondrial protein AtMg003105.2e-1244.44Show/hide
Query:  MANFWWEGLEESRQIHWMSWESMCLPK-CMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRYFRNFRFLEAEL
        M  FWW   E  R+I W++W+ +C  K   GGLGF ++  FNQALLAKQ +RI  +P +LL  L L+ RYF +   +E  +
Subjt:  MANFWWEGLEESRQIHWMSWESMCLPK-CMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRYFRNFRFLEAEL

Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein1.5e-1442.68Show/hide
Query:  MANFWWEGLEESRQIHWMSWESMCLPKCMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRYFRNFRFLEAELSN
        +A+FWW   +E++ +HW +W+ +   K  GG+GF ++E FN ALL KQ WR+ S P SL+   V K RYF     L A L +
Subjt:  MANFWWEGLEESRQIHWMSWESMCLPKCMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRYFRNFRFLEAELSN

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein3.7e-1344.44Show/hide
Query:  MANFWWEGLEESRQIHWMSWESMCLPK-CMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRYFRNFRFLEAEL
        M  FWW   E  R+I W++W+ +C  K   GGLGF ++  FNQALLAKQ +RI  +P +LL  L L+ RYF +   +E  +
Subjt:  MANFWWEGLEESRQIHWMSWESMCLPK-CMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRYFRNFRFLEAEL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAACTTCTGGTGGGAGGGCTTAGAAGAGTCTAGACAAATTCATTGGATGAGTTGGGAGTCGATGTGTCTCCCTAAGTGTATGGGTGGTTTAGGCTTCTGG
AATATGGAGCTTTTCAACCAAGCCCTCCTGGCAAAACAATGTTGGCGTATCTTTAGTGAACCCTCCTCCCTGCTTGGTGGCCTGGTTCTAAAAGGGAGATATTTT
CGAAACTTTAGGTTTCTTGAGGCTGAGCTGTCGAACGAGTACGCCCTACATGTACATTCTTTTCCTACTTTACCTTTGACTAGTCGAGTGAAGGATCTGTTTACT
GAATCAGGTCAGTGGGATGGGGAGAAGCTCAGGAACCATTTCACTGCTGCAGACTGTGAGGTTTTCCAGATGGCTGTGAAGCCGAGTGGCGGTCCGACAGAGGGC
CGATTGTCTTTGGGTATAAGGGGAGGAAGACCCATGTGGAATCCGCCGCTAGAAAATGAGTTAAAGCTGAATGTAGACACCTCGGTGAAGCCAGATTCATGCCTA
ACAGGAGGCGGGTTGATTTTGCGGAATGATTCGTTGAGGTTAGTGAAGATTTTGAATGGAAGGAAGTGGATGTGTCTGAGGTGGGTTCCTCATGGAGGAGGTGTG
TGGATGCTTTGCCAAGATCAGGATTGTAAGGTGTTATTTACACCTAGGCAAGGGAATATGGCAGCTCATACTCTGGCCTCGTTATCCTTTACCTATGCTGACCAT
ACTTGGCTGGAAGAGTGGCCGGTGGAACTTTCGGATGTAATTGCTCGGGATGCTTCTTCTGATAATATGGATGCCCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAACTTCTGGTGGGAGGGCTTAGAAGAGTCTAGACAAATTCATTGGATGAGTTGGGAGTCGATGTGTCTCCCTAAGTGTATGGGTGGTTTAGGCTTCTGG
AATATGGAGCTTTTCAACCAAGCCCTCCTGGCAAAACAATGTTGGCGTATCTTTAGTGAACCCTCCTCCCTGCTTGGTGGCCTGGTTCTAAAAGGGAGATATTTT
CGAAACTTTAGGTTTCTTGAGGCTGAGCTGTCGAACGAGTACGCCCTACATGTACATTCTTTTCCTACTTTACCTTTGACTAGTCGAGTGAAGGATCTGTTTACT
GAATCAGGTCAGTGGGATGGGGAGAAGCTCAGGAACCATTTCACTGCTGCAGACTGTGAGGTTTTCCAGATGGCTGTGAAGCCGAGTGGCGGTCCGACAGAGGGC
CGATTGTCTTTGGGTATAAGGGGAGGAAGACCCATGTGGAATCCGCCGCTAGAAAATGAGTTAAAGCTGAATGTAGACACCTCGGTGAAGCCAGATTCATGCCTA
ACAGGAGGCGGGTTGATTTTGCGGAATGATTCGTTGAGGTTAGTGAAGATTTTGAATGGAAGGAAGTGGATGTGTCTGAGGTGGGTTCCTCATGGAGGAGGTGTG
TGGATGCTTTGCCAAGATCAGGATTGTAAGGTGTTATTTACACCTAGGCAAGGGAATATGGCAGCTCATACTCTGGCCTCGTTATCCTTTACCTATGCTGACCAT
ACTTGGCTGGAAGAGTGGCCGGTGGAACTTTCGGATGTAATTGCTCGGGATGCTTCTTCTGATAATATGGATGCCCTTTGA
Protein sequenceShow/hide protein sequence
MANFWWEGLEESRQIHWMSWESMCLPKCMGGLGFWNMELFNQALLAKQCWRIFSEPSSLLGGLVLKGRYFRNFRFLEAELSNEYALHVHSFPTLPLTSRVKDLFT
ESGQWDGEKLRNHFTAADCEVFQMAVKPSGGPTEGRLSLGIRGGRPMWNPPLENELKLNVDTSVKPDSCLTGGGLILRNDSLRLVKILNGRKWMCLRWVPHGGGV
WMLCQDQDCKVLFTPRQGNMAAHTLASLSFTYADHTWLEEWPVELSDVIARDASSDNMDAL