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Lag0038681 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038681
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr2:23214169..23215234
RNA-Seq ExpressionLag0038681
SyntenyLag0038681
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043019.1 uncharacterized protein E6C27_scaffold75G00980 [Cucumis melo var. makuwa]2.8e-2346.15Show/hide
Query:  YSQNDKLLIHYFQDSLIGSASRWYMQLDSTYIRSWRSLVDSFLKQYRHNVDMVPDRLDLQNMGR---------GRKQRAIK-----------------NM
        Y+ NDKLLIHYFQDSL+G  S WYMQ D + +  W+ L DSFLKQY++N+DMVPDRLDLQ M +          ++ R +                  N 
Subjt:  YSQNDKLLIHYFQDSLIGSASRWYMQLDSTYIRSWRSLVDSFLKQYRHNVDMVPDRLDLQNMGR---------GRKQRAIK-----------------NM

Query:  LK--------GSASTNFLDIMMIGERTEYEVKHGRIFDNAIES
        L+        GSASTNF D++ IGER E+ VK+GRI D A E+
Subjt:  LK--------GSASTNFLDIMMIGERTEYEVKHGRIFDNAIES

XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]1.8e-2552.11Show/hide
Query:  YSQNDKLLIHYFQDSLIGSASRWYMQLDSTYIRSWRSLVDSFLKQYRHNVDMVPDRLDLQNMGR----GRKQRAIK----------------------NM
        Y QNDKLLIH FQDSL   ASRWYMQLDS+++ SW++L DSFLKQY+HN+DM PDRLDLQ M +      K+ A +                      N 
Subjt:  YSQNDKLLIHYFQDSLIGSASRWYMQLDSTYIRSWRSLVDSFLKQYRHNVDMVPDRLDLQNMGR----GRKQRAIK----------------------NM

Query:  LK--------GSASTNFLDIMMIGERTEYEVKHGRIFDNAIE
        LK        GSASTNF DIM IGER EY V+HGRI   A E
Subjt:  LK--------GSASTNFLDIMMIGERTEYEVKHGRIFDNAIE

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]6.1e-2652.55Show/hide
Query:  YSQNDKLLIHYFQDSLIGSASRWYMQLDSTYIRSWRSLVDSFLKQYRHNVDMVPDRLDLQNMGRGRKQRAIK---------------------------N
        Y QNDKLLIH FQDSL G ASRWYMQLDS+++ SW++L DSFLKQY+HN+DM PDRLDLQ M + +  ++ K                           N
Subjt:  YSQNDKLLIHYFQDSLIGSASRWYMQLDSTYIRSWRSLVDSFLKQYRHNVDMVPDRLDLQNMGRGRKQRAIK---------------------------N

Query:  MLK--------GSASTNFLDIMMIGERTEYEVKHGRI
         LK        GSASTNF DIM IGER EY V+HGRI
Subjt:  MLK--------GSASTNFLDIMMIGERTEYEVKHGRI

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]8.8e-2551.41Show/hide
Query:  YSQNDKLLIHYFQDSLIGSASRWYMQLDSTYIRSWRSLVDSFLKQYRHNVDMVPDRLDLQNMGRGR----KQRAIK----------------------NM
        Y QN KLLIH FQDSL G ASRWYMQLDS+++ SW++L DSFLKQY+HN+DM PDRLDLQ M +      K+ A +                      N 
Subjt:  YSQNDKLLIHYFQDSLIGSASRWYMQLDSTYIRSWRSLVDSFLKQYRHNVDMVPDRLDLQNMGRGR----KQRAIK----------------------NM

Query:  LK--------GSASTNFLDIMMIGERTEYEVKHGRIFDNAIE
        LK        GSASTNF DIM IGER EY V+H RI   A E
Subjt:  LK--------GSASTNFLDIMMIGERTEYEVKHGRIFDNAIE

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]6.8e-2552.94Show/hide
Query:  YSQNDKLLIHYFQDSLIGSASRWYMQLDSTYIRSWRSLVDSFLKQYRHNVDMVPDRLDLQNMGR----GRKQRAIK----------------------NM
        Y QNDKLLIH FQDSL G ASRWYMQLDS+ + SW++L DSFLKQY+HN+DM PDRLDLQ M +      K+ A +                      N 
Subjt:  YSQNDKLLIHYFQDSLIGSASRWYMQLDSTYIRSWRSLVDSFLKQYRHNVDMVPDRLDLQNMGR----GRKQRAIK----------------------NM

Query:  LK--------GSASTNFLDIMMIGERTEYEVKHGRI
        LK        G+ASTNF DIM IGER EY V+HGRI
Subjt:  LK--------GSASTNFLDIMMIGERTEYEVKHGRI

TrEMBL top hitse value%identityAlignment
A0A5A7TP68 Retrotrans_gag domain-containing protein1.4e-2346.15Show/hide
Query:  YSQNDKLLIHYFQDSLIGSASRWYMQLDSTYIRSWRSLVDSFLKQYRHNVDMVPDRLDLQNMGR---------GRKQRAIK-----------------NM
        Y+ NDKLLIHYFQDSL+G  S WYMQ D + +  W+ L DSFLKQY++N+DMVPDRLDLQ M +          ++ R +                  N 
Subjt:  YSQNDKLLIHYFQDSLIGSASRWYMQLDSTYIRSWRSLVDSFLKQYRHNVDMVPDRLDLQNMGR---------GRKQRAIK-----------------NM

Query:  LK--------GSASTNFLDIMMIGERTEYEVKHGRIFDNAIES
        L+        GSASTNF D++ IGER E+ VK+GRI D A E+
Subjt:  LK--------GSASTNFLDIMMIGERTEYEVKHGRIFDNAIES

A0A6J1CNY7 Ribonuclease H8.6e-2652.11Show/hide
Query:  YSQNDKLLIHYFQDSLIGSASRWYMQLDSTYIRSWRSLVDSFLKQYRHNVDMVPDRLDLQNMGR----GRKQRAIK----------------------NM
        Y QNDKLLIH FQDSL   ASRWYMQLDS+++ SW++L DSFLKQY+HN+DM PDRLDLQ M +      K+ A +                      N 
Subjt:  YSQNDKLLIHYFQDSLIGSASRWYMQLDSTYIRSWRSLVDSFLKQYRHNVDMVPDRLDLQNMGR----GRKQRAIK----------------------NM

Query:  LK--------GSASTNFLDIMMIGERTEYEVKHGRIFDNAIE
        LK        GSASTNF DIM IGER EY V+HGRI   A E
Subjt:  LK--------GSASTNFLDIMMIGERTEYEVKHGRIFDNAIE

A0A6J1D099 Ribonuclease H3.0e-2652.55Show/hide
Query:  YSQNDKLLIHYFQDSLIGSASRWYMQLDSTYIRSWRSLVDSFLKQYRHNVDMVPDRLDLQNMGRGRKQRAIK---------------------------N
        Y QNDKLLIH FQDSL G ASRWYMQLDS+++ SW++L DSFLKQY+HN+DM PDRLDLQ M + +  ++ K                           N
Subjt:  YSQNDKLLIHYFQDSLIGSASRWYMQLDSTYIRSWRSLVDSFLKQYRHNVDMVPDRLDLQNMGRGRKQRAIK---------------------------N

Query:  MLK--------GSASTNFLDIMMIGERTEYEVKHGRI
         LK        GSASTNF DIM IGER EY V+HGRI
Subjt:  MLK--------GSASTNFLDIMMIGERTEYEVKHGRI

A0A6J1DZ90 Ribonuclease H4.3e-2551.41Show/hide
Query:  YSQNDKLLIHYFQDSLIGSASRWYMQLDSTYIRSWRSLVDSFLKQYRHNVDMVPDRLDLQNMGRGR----KQRAIK----------------------NM
        Y QN KLLIH FQDSL G ASRWYMQLDS+++ SW++L DSFLKQY+HN+DM PDRLDLQ M +      K+ A +                      N 
Subjt:  YSQNDKLLIHYFQDSLIGSASRWYMQLDSTYIRSWRSLVDSFLKQYRHNVDMVPDRLDLQNMGRGR----KQRAIK----------------------NM

Query:  LK--------GSASTNFLDIMMIGERTEYEVKHGRIFDNAIE
        LK        GSASTNF DIM IGER EY V+H RI   A E
Subjt:  LK--------GSASTNFLDIMMIGERTEYEVKHGRIFDNAIE

A0A6J1E2J7 Ribonuclease H3.3e-2552.94Show/hide
Query:  YSQNDKLLIHYFQDSLIGSASRWYMQLDSTYIRSWRSLVDSFLKQYRHNVDMVPDRLDLQNMGR----GRKQRAIK----------------------NM
        Y QNDKLLIH FQDSL G ASRWYMQLDS+ + SW++L DSFLKQY+HN+DM PDRLDLQ M +      K+ A +                      N 
Subjt:  YSQNDKLLIHYFQDSLIGSASRWYMQLDSTYIRSWRSLVDSFLKQYRHNVDMVPDRLDLQNMGR----GRKQRAIK----------------------NM

Query:  LK--------GSASTNFLDIMMIGERTEYEVKHGRI
        LK        G+ASTNF DIM IGER EY V+HGRI
Subjt:  LK--------GSASTNFLDIMMIGERTEYEVKHGRI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCTCAACCTAGCATCCCAGTCAATAATCCTGGAGGACCAATCTAGCATAAGCTGTCAAACTGAATTTGCGTTCCAGAAACCTATCCCACTGAAAGCAAATTCCAA
TGTTCTCAATCTTCATGATCCTGTAATTAGAAGAGCCTTGACTGGAAAAGGTTATTCTCAAAATGACAAGCTCCTCATACACTATTTTCAAGATAGTTTGATTGGTTCGG
CATCTCGTTGGTATATGCAATTAGACAGTACATACATTCGTTCTTGGAGGAGTTTGGTTGATTCCTTTTTGAAGCAATACAGGCATAATGTAGACATGGTTCCTGATCGA
TTAGACTTGCAGAACATGGGGAGAGGAAGGAAGCAGAGAGCTATAAAGAATATGCTCAAAGGAAGTGCATCCACCAATTTTTTAGACATCATGATGATTGGAGAAAGAAC
AGAATACGAGGTTAAGCATGGAAGGATATTCGATAATGCAATTGAATCATCAATCGAAGACGAAGAAGACTGCTCAGGGATCAACAATTCCAAGTCATATTTTCTACGCC
AAGACTCATGCACAACTACAAAGGGAATCAGCAAAGTTCTCCTCAAAGTCATTCGTTCATTCACCTATTTTGCAGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTCTCAACCTAGCATCCCAGTCAATAATCCTGGAGGACCAATCTAGCATAAGCTGTCAAACTGAATTTGCGTTCCAGAAACCTATCCCACTGAAAGCAAATTCCAA
TGTTCTCAATCTTCATGATCCTGTAATTAGAAGAGCCTTGACTGGAAAAGGTTATTCTCAAAATGACAAGCTCCTCATACACTATTTTCAAGATAGTTTGATTGGTTCGG
CATCTCGTTGGTATATGCAATTAGACAGTACATACATTCGTTCTTGGAGGAGTTTGGTTGATTCCTTTTTGAAGCAATACAGGCATAATGTAGACATGGTTCCTGATCGA
TTAGACTTGCAGAACATGGGGAGAGGAAGGAAGCAGAGAGCTATAAAGAATATGCTCAAAGGAAGTGCATCCACCAATTTTTTAGACATCATGATGATTGGAGAAAGAAC
AGAATACGAGGTTAAGCATGGAAGGATATTCGATAATGCAATTGAATCATCAATCGAAGACGAAGAAGACTGCTCAGGGATCAACAATTCCAAGTCATATTTTCTACGCC
AAGACTCATGCACAACTACAAAGGGAATCAGCAAAGTTCTCCTCAAAGTCATTCGTTCATTCACCTATTTTGCAGCATAA
Protein sequenceShow/hide protein sequence
MSLNLASQSIILEDQSSISCQTEFAFQKPIPLKANSNVLNLHDPVIRRALTGKGYSQNDKLLIHYFQDSLIGSASRWYMQLDSTYIRSWRSLVDSFLKQYRHNVDMVPDR
LDLQNMGRGRKQRAIKNMLKGSASTNFLDIMMIGERTEYEVKHGRIFDNAIESSIEDEEDCSGINNSKSYFLRQDSCTTTKGISKVLLKVIRSFTYFAA