; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0038706 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038706
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr2:23921381..23922343
RNA-Seq ExpressionLag0038706
SyntenyLag0038706
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR025724 - GAG-pre-integrase domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN61322.1 hypothetical protein VITISV_012106 [Vitis vinifera]1.8e-5340.58Show/hide
Query:  MTSDVNNLQQSTPYFGGEQVVIGNGKSIHVLNIGSSSFTSHSHAFPITLRYVLHTSLLSHNLISIGKLCHDNRAFVEFHPTLFFFVKDLLSKTILLTGHL
        +T ++ NL  ++PY G ++V IGNGK + + NIGS    SH+H+F   L+ V H   +S NLIS+ K C +N A +EFH    FFVKDL +K +L  G L
Subjt:  MTSDVNNLQQSTPYFGGEQVVIGNGKSIHVLNIGSSSFTSHSHAFPITLRYVLHTSLLSHNLISIGKLCHDNRAFVEFHPTLFFFVKDLLSKTILLTGHL

Query:  EEGLYKLFVKFTSFSHDKQLQHPVVFLSTLQDT-----SLWHRRLGHPSFSIVRRVLSNCNLRFSSSIEQFCNSCQLAKNHRLPFSSSSSKTHVPFELVY
        E GLYK F  F++      + +   F S    T      LWH RLGH SF IV +V++ CN+         C+ CQLAK+HRLP   S+     P ELVY
Subjt:  EEGLYKLFVKFTSFSHDKQLQHPVVFLSTLQDT-----SLWHRRLGHPSFSIVRRVLSNCNLRFSSSIEQFCNSCQLAKNHRLPFSSSSSKTHVPFELVY

Query:  LDAWGASLVKSINGARFFYLICYDYTRYTWLYLLQSKQDVLSIFILFKA----KFNTKIKALQTNGGSEFAPLFLFCYPMALKIVSLVPILYSRMGMLRR
         D WG + +KS +GAR+F L   DY+RYTW Y LQ+K   L IF  FK     +F+TKIK LQ++ G EF     F   + +      P    + G + R
Subjt:  LDAWGASLVKSINGARFFYLICYDYTRYTWLYLLQSKQDVLSIFILFKA----KFNTKIKALQTNGGSEFAPLFLFCYPMALKIVSLVPILYSRMGMLRR

Query:  KTAMLLKLAYRLL
        K   +++    LL
Subjt:  KTAMLLKLAYRLL

RVW22017.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]2.0e-5243.34Show/hide
Query:  MTSDVNNLQQSTPYFGGEQVVIGNGKSIHVLNIGSSSFTSHSHAFPITLRYVLHTSLLSHNLISIGKLCHDNRAFVEFHPTLFFFVKDLLSKTILLTGHL
        +T +V NL  +TPY G ++V IGNGK + + N G +   S+ H+F   L+ V H   +S NLIS+ K C DN A +EFH    FFVKDL +K +L  G L
Subjt:  MTSDVNNLQQSTPYFGGEQVVIGNGKSIHVLNIGSSSFTSHSHAFPITLRYVLHTSLLSHNLISIGKLCHDNRAFVEFHPTLFFFVKDLLSKTILLTGHL

Query:  EEGLYKLFVKFTSFSHDKQLQHPVVFLSTLQDTS------LWHRRLGHPSFSIVRRVLSNCNLRFSSSIEQFCNSCQLAKNHRLPFSSSSSKTHVPFELV
        E GLY    KF   S+ K     +   ST Q ++      LWH RLGH +  IV R++ NCN+         C+SCQLAK+HRLP   SS     P ELV
Subjt:  EEGLYKLFVKFTSFSHDKQLQHPVVFLSTLQDTS------LWHRRLGHPSFSIVRRVLSNCNLRFSSSIEQFCNSCQLAKNHRLPFSSSSSKTHVPFELV

Query:  YLDAWGASLVKSINGARFFYLICYDYTRYTWLYLLQSKQDVLSIFILFKA----KFNTKIKALQTNGGSEFAPLFLFCYPMALKIVSLVPILY
        Y D WG + V S +GA++F L   DY+RYTWLYLLQSK   L IF  FK     +F  KIK LQ++ G EF     F    AL   + +P+ +
Subjt:  YLDAWGASLVKSINGARFFYLICYDYTRYTWLYLLQSKQDVLSIFILFKA----KFNTKIKALQTNGGSEFAPLFLFCYPMALKIVSLVPILY

RVW36350.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]1.4e-5340.58Show/hide
Query:  MTSDVNNLQQSTPYFGGEQVVIGNGKSIHVLNIGSSSFTSHSHAFPITLRYVLHTSLLSHNLISIGKLCHDNRAFVEFHPTLFFFVKDLLSKTILLTGHL
        +T ++ NL  ++PY G ++V IGNGK + + NIGS    SH+H+F   L+ V H   +S NLIS+ K C +N A +EFH    FFVKDL +K +L  G L
Subjt:  MTSDVNNLQQSTPYFGGEQVVIGNGKSIHVLNIGSSSFTSHSHAFPITLRYVLHTSLLSHNLISIGKLCHDNRAFVEFHPTLFFFVKDLLSKTILLTGHL

Query:  EEGLYKLFVKFTSFSHDKQLQHPVVFLSTLQDT-----SLWHRRLGHPSFSIVRRVLSNCNLRFSSSIEQFCNSCQLAKNHRLPFSSSSSKTHVPFELVY
        E GLYK F  F++      + +   F S    T      LWH RLGH SF IV +V++ CN+         C+ CQLAK+HRLP   S+     P ELVY
Subjt:  EEGLYKLFVKFTSFSHDKQLQHPVVFLSTLQDT-----SLWHRRLGHPSFSIVRRVLSNCNLRFSSSIEQFCNSCQLAKNHRLPFSSSSSKTHVPFELVY

Query:  LDAWGASLVKSINGARFFYLICYDYTRYTWLYLLQSKQDVLSIFILFKA----KFNTKIKALQTNGGSEFAPLFLFCYPMALKIVSLVPILYSRMGMLRR
         D WG + +KS +GAR+F L   DY+RYTW Y LQ+K   L IF  FK     +F+TKIK LQ++ G EF     F   + +      P   ++ G + R
Subjt:  LDAWGASLVKSINGARFFYLICYDYTRYTWLYLLQSKQDVLSIFILFKA----KFNTKIKALQTNGGSEFAPLFLFCYPMALKIVSLVPILYSRMGMLRR

Query:  KTAMLLKLAYRLL
        K   +++    LL
Subjt:  KTAMLLKLAYRLL

RVW95765.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.4e-5340.58Show/hide
Query:  MTSDVNNLQQSTPYFGGEQVVIGNGKSIHVLNIGSSSFTSHSHAFPITLRYVLHTSLLSHNLISIGKLCHDNRAFVEFHPTLFFFVKDLLSKTILLTGHL
        +T ++ NL  ++PY G ++V IGNGK + + NIGS    SH+H+F   L+ V H   +S NLIS+ K C +N A +EFH    FFVKDL +K +L  G L
Subjt:  MTSDVNNLQQSTPYFGGEQVVIGNGKSIHVLNIGSSSFTSHSHAFPITLRYVLHTSLLSHNLISIGKLCHDNRAFVEFHPTLFFFVKDLLSKTILLTGHL

Query:  EEGLYKLFVKFTSFSHDKQLQHPVVFLSTLQDT-----SLWHRRLGHPSFSIVRRVLSNCNLRFSSSIEQFCNSCQLAKNHRLPFSSSSSKTHVPFELVY
        E GLYK F  F++      + +   F S    T      LWH RLGH SF IV +V++ CN+         C+ CQLAK+HRLP   S+     P ELVY
Subjt:  EEGLYKLFVKFTSFSHDKQLQHPVVFLSTLQDT-----SLWHRRLGHPSFSIVRRVLSNCNLRFSSSIEQFCNSCQLAKNHRLPFSSSSSKTHVPFELVY

Query:  LDAWGASLVKSINGARFFYLICYDYTRYTWLYLLQSKQDVLSIFILFKA----KFNTKIKALQTNGGSEFAPLFLFCYPMALKIVSLVPILYSRMGMLRR
         D WG + +KS +GAR+F L   DY+RYTW Y LQ+K   L IF  FK     +F+TKIK LQ++ G EF     F   + +      P   ++ G + R
Subjt:  LDAWGASLVKSINGARFFYLICYDYTRYTWLYLLQSKQDVLSIFILFKA----KFNTKIKALQTNGGSEFAPLFLFCYPMALKIVSLVPILYSRMGMLRR

Query:  KTAMLLKLAYRLL
        K   +++    LL
Subjt:  KTAMLLKLAYRLL

RVX15666.1 Retrovirus-related Pol polyprotein from transposon RE2 [Vitis vinifera]4.8e-5440.89Show/hide
Query:  MTSDVNNLQQSTPYFGGEQVVIGNGKSIHVLNIGSSSFTSHSHAFPITLRYVLHTSLLSHNLISIGKLCHDNRAFVEFHPTLFFFVKDLLSKTILLTGHL
        +T ++ NL  ++PY G ++V IGNGK + + NIGS    SH+H+F   L+ V H   +S NLIS+ K C +N A +EFH    FFVKDL +K +L  G L
Subjt:  MTSDVNNLQQSTPYFGGEQVVIGNGKSIHVLNIGSSSFTSHSHAFPITLRYVLHTSLLSHNLISIGKLCHDNRAFVEFHPTLFFFVKDLLSKTILLTGHL

Query:  EEGLYKLFVKFTSFSHDKQLQHPVVFLSTLQDT-----SLWHRRLGHPSFSIVRRVLSNCNLRFSSSIEQFCNSCQLAKNHRLPFSSSSSKTHVPFELVY
        E GLYK F  F++      + +  VF S    T      LWH RLGH SF IV +V++ CN+         C+ CQLAK+HRLP   S+     P ELVY
Subjt:  EEGLYKLFVKFTSFSHDKQLQHPVVFLSTLQDT-----SLWHRRLGHPSFSIVRRVLSNCNLRFSSSIEQFCNSCQLAKNHRLPFSSSSSKTHVPFELVY

Query:  LDAWGASLVKSINGARFFYLICYDYTRYTWLYLLQSKQDVLSIFILFKA----KFNTKIKALQTNGGSEFAPLFLFCYPMALKIVSLVPILYSRMGMLRR
         D WG + +KS +GAR+F L   DY+RYTW Y LQ+K   L IF  FK     +F+TKIK LQ++ G EF     F   + +      P   ++ G + R
Subjt:  LDAWGASLVKSINGARFFYLICYDYTRYTWLYLLQSKQDVLSIFILFKA----KFNTKIKALQTNGGSEFAPLFLFCYPMALKIVSLVPILYSRMGMLRR

Query:  KTAMLLKLAYRLL
        K   +++    LL
Subjt:  KTAMLLKLAYRLL

TrEMBL top hitse value%identityAlignment
A0A438CFM4 Retrovirus-related Pol polyprotein from transposon RE19.7e-5343.34Show/hide
Query:  MTSDVNNLQQSTPYFGGEQVVIGNGKSIHVLNIGSSSFTSHSHAFPITLRYVLHTSLLSHNLISIGKLCHDNRAFVEFHPTLFFFVKDLLSKTILLTGHL
        +T +V NL  +TPY G ++V IGNGK + + N G +   S+ H+F   L+ V H   +S NLIS+ K C DN A +EFH    FFVKDL +K +L  G L
Subjt:  MTSDVNNLQQSTPYFGGEQVVIGNGKSIHVLNIGSSSFTSHSHAFPITLRYVLHTSLLSHNLISIGKLCHDNRAFVEFHPTLFFFVKDLLSKTILLTGHL

Query:  EEGLYKLFVKFTSFSHDKQLQHPVVFLSTLQDTS------LWHRRLGHPSFSIVRRVLSNCNLRFSSSIEQFCNSCQLAKNHRLPFSSSSSKTHVPFELV
        E GLY    KF   S+ K     +   ST Q ++      LWH RLGH +  IV R++ NCN+         C+SCQLAK+HRLP   SS     P ELV
Subjt:  EEGLYKLFVKFTSFSHDKQLQHPVVFLSTLQDTS------LWHRRLGHPSFSIVRRVLSNCNLRFSSSIEQFCNSCQLAKNHRLPFSSSSSKTHVPFELV

Query:  YLDAWGASLVKSINGARFFYLICYDYTRYTWLYLLQSKQDVLSIFILFKA----KFNTKIKALQTNGGSEFAPLFLFCYPMALKIVSLVPILY
        Y D WG + V S +GA++F L   DY+RYTWLYLLQSK   L IF  FK     +F  KIK LQ++ G EF     F    AL   + +P+ +
Subjt:  YLDAWGASLVKSINGARFFYLICYDYTRYTWLYLLQSKQDVLSIFILFKA----KFNTKIKALQTNGGSEFAPLFLFCYPMALKIVSLVPILY

A0A438DLM0 Retrovirus-related Pol polyprotein from transposon RE16.7e-5440.58Show/hide
Query:  MTSDVNNLQQSTPYFGGEQVVIGNGKSIHVLNIGSSSFTSHSHAFPITLRYVLHTSLLSHNLISIGKLCHDNRAFVEFHPTLFFFVKDLLSKTILLTGHL
        +T ++ NL  ++PY G ++V IGNGK + + NIGS    SH+H+F   L+ V H   +S NLIS+ K C +N A +EFH    FFVKDL +K +L  G L
Subjt:  MTSDVNNLQQSTPYFGGEQVVIGNGKSIHVLNIGSSSFTSHSHAFPITLRYVLHTSLLSHNLISIGKLCHDNRAFVEFHPTLFFFVKDLLSKTILLTGHL

Query:  EEGLYKLFVKFTSFSHDKQLQHPVVFLSTLQDT-----SLWHRRLGHPSFSIVRRVLSNCNLRFSSSIEQFCNSCQLAKNHRLPFSSSSSKTHVPFELVY
        E GLYK F  F++      + +   F S    T      LWH RLGH SF IV +V++ CN+         C+ CQLAK+HRLP   S+     P ELVY
Subjt:  EEGLYKLFVKFTSFSHDKQLQHPVVFLSTLQDT-----SLWHRRLGHPSFSIVRRVLSNCNLRFSSSIEQFCNSCQLAKNHRLPFSSSSSKTHVPFELVY

Query:  LDAWGASLVKSINGARFFYLICYDYTRYTWLYLLQSKQDVLSIFILFKA----KFNTKIKALQTNGGSEFAPLFLFCYPMALKIVSLVPILYSRMGMLRR
         D WG + +KS +GAR+F L   DY+RYTW Y LQ+K   L IF  FK     +F+TKIK LQ++ G EF     F   + +      P   ++ G + R
Subjt:  LDAWGASLVKSINGARFFYLICYDYTRYTWLYLLQSKQDVLSIFILFKA----KFNTKIKALQTNGGSEFAPLFLFCYPMALKIVSLVPILYSRMGMLRR

Query:  KTAMLLKLAYRLL
        K   +++    LL
Subjt:  KTAMLLKLAYRLL

A0A438IG92 Retrovirus-related Pol polyprotein from transposon TNT 1-946.7e-5440.58Show/hide
Query:  MTSDVNNLQQSTPYFGGEQVVIGNGKSIHVLNIGSSSFTSHSHAFPITLRYVLHTSLLSHNLISIGKLCHDNRAFVEFHPTLFFFVKDLLSKTILLTGHL
        +T ++ NL  ++PY G ++V IGNGK + + NIGS    SH+H+F   L+ V H   +S NLIS+ K C +N A +EFH    FFVKDL +K +L  G L
Subjt:  MTSDVNNLQQSTPYFGGEQVVIGNGKSIHVLNIGSSSFTSHSHAFPITLRYVLHTSLLSHNLISIGKLCHDNRAFVEFHPTLFFFVKDLLSKTILLTGHL

Query:  EEGLYKLFVKFTSFSHDKQLQHPVVFLSTLQDT-----SLWHRRLGHPSFSIVRRVLSNCNLRFSSSIEQFCNSCQLAKNHRLPFSSSSSKTHVPFELVY
        E GLYK F  F++      + +   F S    T      LWH RLGH SF IV +V++ CN+         C+ CQLAK+HRLP   S+     P ELVY
Subjt:  EEGLYKLFVKFTSFSHDKQLQHPVVFLSTLQDT-----SLWHRRLGHPSFSIVRRVLSNCNLRFSSSIEQFCNSCQLAKNHRLPFSSSSSKTHVPFELVY

Query:  LDAWGASLVKSINGARFFYLICYDYTRYTWLYLLQSKQDVLSIFILFKA----KFNTKIKALQTNGGSEFAPLFLFCYPMALKIVSLVPILYSRMGMLRR
         D WG + +KS +GAR+F L   DY+RYTW Y LQ+K   L IF  FK     +F+TKIK LQ++ G EF     F   + +      P   ++ G + R
Subjt:  LDAWGASLVKSINGARFFYLICYDYTRYTWLYLLQSKQDVLSIFILFKA----KFNTKIKALQTNGGSEFAPLFLFCYPMALKIVSLVPILYSRMGMLRR

Query:  KTAMLLKLAYRLL
        K   +++    LL
Subjt:  KTAMLLKLAYRLL

A0A438K374 Retrovirus-related Pol polyprotein from transposon RE22.3e-5440.89Show/hide
Query:  MTSDVNNLQQSTPYFGGEQVVIGNGKSIHVLNIGSSSFTSHSHAFPITLRYVLHTSLLSHNLISIGKLCHDNRAFVEFHPTLFFFVKDLLSKTILLTGHL
        +T ++ NL  ++PY G ++V IGNGK + + NIGS    SH+H+F   L+ V H   +S NLIS+ K C +N A +EFH    FFVKDL +K +L  G L
Subjt:  MTSDVNNLQQSTPYFGGEQVVIGNGKSIHVLNIGSSSFTSHSHAFPITLRYVLHTSLLSHNLISIGKLCHDNRAFVEFHPTLFFFVKDLLSKTILLTGHL

Query:  EEGLYKLFVKFTSFSHDKQLQHPVVFLSTLQDT-----SLWHRRLGHPSFSIVRRVLSNCNLRFSSSIEQFCNSCQLAKNHRLPFSSSSSKTHVPFELVY
        E GLYK F  F++      + +  VF S    T      LWH RLGH SF IV +V++ CN+         C+ CQLAK+HRLP   S+     P ELVY
Subjt:  EEGLYKLFVKFTSFSHDKQLQHPVVFLSTLQDT-----SLWHRRLGHPSFSIVRRVLSNCNLRFSSSIEQFCNSCQLAKNHRLPFSSSSSKTHVPFELVY

Query:  LDAWGASLVKSINGARFFYLICYDYTRYTWLYLLQSKQDVLSIFILFKA----KFNTKIKALQTNGGSEFAPLFLFCYPMALKIVSLVPILYSRMGMLRR
         D WG + +KS +GAR+F L   DY+RYTW Y LQ+K   L IF  FK     +F+TKIK LQ++ G EF     F   + +      P   ++ G + R
Subjt:  LDAWGASLVKSINGARFFYLICYDYTRYTWLYLLQSKQDVLSIFILFKA----KFNTKIKALQTNGGSEFAPLFLFCYPMALKIVSLVPILYSRMGMLRR

Query:  KTAMLLKLAYRLL
        K   +++    LL
Subjt:  KTAMLLKLAYRLL

A5BFR8 Integrase catalytic domain-containing protein8.8e-5440.58Show/hide
Query:  MTSDVNNLQQSTPYFGGEQVVIGNGKSIHVLNIGSSSFTSHSHAFPITLRYVLHTSLLSHNLISIGKLCHDNRAFVEFHPTLFFFVKDLLSKTILLTGHL
        +T ++ NL  ++PY G ++V IGNGK + + NIGS    SH+H+F   L+ V H   +S NLIS+ K C +N A +EFH    FFVKDL +K +L  G L
Subjt:  MTSDVNNLQQSTPYFGGEQVVIGNGKSIHVLNIGSSSFTSHSHAFPITLRYVLHTSLLSHNLISIGKLCHDNRAFVEFHPTLFFFVKDLLSKTILLTGHL

Query:  EEGLYKLFVKFTSFSHDKQLQHPVVFLSTLQDT-----SLWHRRLGHPSFSIVRRVLSNCNLRFSSSIEQFCNSCQLAKNHRLPFSSSSSKTHVPFELVY
        E GLYK F  F++      + +   F S    T      LWH RLGH SF IV +V++ CN+         C+ CQLAK+HRLP   S+     P ELVY
Subjt:  EEGLYKLFVKFTSFSHDKQLQHPVVFLSTLQDT-----SLWHRRLGHPSFSIVRRVLSNCNLRFSSSIEQFCNSCQLAKNHRLPFSSSSSKTHVPFELVY

Query:  LDAWGASLVKSINGARFFYLICYDYTRYTWLYLLQSKQDVLSIFILFKA----KFNTKIKALQTNGGSEFAPLFLFCYPMALKIVSLVPILYSRMGMLRR
         D WG + +KS +GAR+F L   DY+RYTW Y LQ+K   L IF  FK     +F+TKIK LQ++ G EF     F   + +      P    + G + R
Subjt:  LDAWGASLVKSINGARFFYLICYDYTRYTWLYLLQSKQDVLSIFILFKA----KFNTKIKALQTNGGSEFAPLFLFCYPMALKIVSLVPILYSRMGMLRR

Query:  KTAMLLKLAYRLL
        K   +++    LL
Subjt:  KTAMLLKLAYRLL

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-1128.67Show/hide
Query:  LSTLQD---TSLWHRRLGHPSFSIVRRVLSNCNLRFS-SSIEQFCNSCQLAKNHRLPFSSSSSKTHVPFELVYLDAWGASLVKSINGARFFYLICYDYTR
        L+  QD     LWH+R+GH S   ++ +     + ++  +  + C+ C   K HR+ F +SS +     +LVY D  G   ++S+ G ++F     D +R
Subjt:  LSTLQD---TSLWHRRLGHPSFSIVRRVLSNCNLRFS-SSIEQFCNSCQLAKNHRLPFSSSSSKTHVPFELVYLDAWGASLVKSINGARFFYLICYDYTR

Query:  YTWLYLLQSKQDVLSIFILFKA----KFNTKIKALQTNGGSEF
          W+Y+L++K  V  +F  F A    +   K+K L+++ G E+
Subjt:  YTWLYLLQSKQDVLSIFILFKA----KFNTKIKALQTNGGSEF

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE13.3e-3432.27Show/hide
Query:  MTSDVNNLQQSTPYFGGEQVVIGNGKSIHVLNIGSSSFTSHSHAFPITLRYVLHTSLLSHNLISIGKLCHDNRAFVEFHPTLFFFVKDLLSKTILLTGHL
        +TSD NNL    PY GG+ V++ +G +I + + GS+S ++ S   P+ L  +L+   +  NLIS+ +LC+ N   VEF P   F VKDL +   LL G  
Subjt:  MTSDVNNLQQSTPYFGGEQVVIGNGKSIHVLNIGSSSFTSHSHAFPITLRYVLHTSLLSHNLISIGKLCHDNRAFVEFHPTLFFFVKDLLSKTILLTGHL

Query:  EEGLYKLFVKFTSFSHDKQLQHPVVFL---STLQDTSLWHRRLGHPSFSIVRRVLSNCNLRFSSSIEQF--CNSCQLAKNHRLPFSSSSSKTHVPFELVY
        ++ LY+  +  +          PV      S+    S WH RLGHP+ SI+  V+SN +L   +   +F  C+ C + K++++PFS S+  +  P E +Y
Subjt:  EEGLYKLFVKFTSFSHDKQLQHPVVFL---STLQDTSLWHRRLGHPSFSIVRRVLSNCNLRFSSSIEQF--CNSCQLAKNHRLPFSSSSSKTHVPFELVY

Query:  LDAWGASLVKSINGARFFYLICYDYTRYTWLYLLQSKQDVLSIFILFK----AKFNTKIKALQTNGGSEFAPLFLFCYPMALKIVSLVPILYSRMGMLRR
         D W +S + S +  R++ +    +TRYTWLY L+ K  V   FI FK     +F T+I    ++ G EF  L+ +     +  ++  P      G+  R
Subjt:  LDAWGASLVKSINGARFFYLICYDYTRYTWLYLLQSKQDVLSIFILFK----AKFNTKIKALQTNGGSEFAPLFLFCYPMALKIVSLVPILYSRMGMLRR

Query:  KTAMLLKLAYRLL
        K   +++    LL
Subjt:  KTAMLLKLAYRLL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.6e-3633.65Show/hide
Query:  MTSDVNNLQQSTPYFGGEQVVIGNGKSIHVLNIGSSSFTSHSHAFPITLRYVLHTSLLSHNLISIGKLCHDNRAFVEFHPTLFFFVKDLLSKTILLTGHL
        +TSD NNL    PY GG+ V+I +G +I + + GS+S  + S +  + L  VL+   +  NLIS+ +LC+ NR  VEF P   F VKDL +   LL G  
Subjt:  MTSDVNNLQQSTPYFGGEQVVIGNGKSIHVLNIGSSSFTSHSHAFPITLRYVLHTSLLSHNLISIGKLCHDNRAFVEFHPTLFFFVKDLLSKTILLTGHL

Query:  EEGLYKLFVKFTSFSHDKQLQHPVVFLSTLQDT--SLWHRRLGHPSFSIVRRVLSNCNLRFSSSIEQF--CNSCQLAKNHRLPFSSSSSKTHVPFELVYL
        ++ LY+  +  +        Q   +F S       S WH RLGHPS +I+  V+SN +L   +   +   C+ C + K+H++PFS+S+  +  P E +Y 
Subjt:  EEGLYKLFVKFTSFSHDKQLQHPVVFLSTLQDT--SLWHRRLGHPSFSIVRRVLSNCNLRFSSSIEQF--CNSCQLAKNHRLPFSSSSSKTHVPFELVYL

Query:  DAWGASLVKSINGARFFYLICYDYTRYTWLYLLQSKQDVLSIFILFKA----KFNTKIKALQTNGGSEFAPLFLFCYPMALKIVSLVPILYSRMGMLRRK
        D W +S + SI+  R++ +    +TRYTWLY L+ K  V   FI+FK+    +F T+I  L ++ G EF  L  +     +   +  P      G+  RK
Subjt:  DAWGASLVKSINGARFFYLICYDYTRYTWLYLLQSKQDVLSIFILFKA----KFNTKIKALQTNGGSEFAPLFLFCYPMALKIVSLVPILYSRMGMLRRK

Query:  TAMLLKLAYRLL
           ++++   LL
Subjt:  TAMLLKLAYRLL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATCGGATGTCAACAATTTACAACAGTCCACTCCTTATTTTGGTGGAGAGCAAGTTGTTATTGGCAATGGTAAGTCCATCCATGTCCTTAACATTGGTTCCTCTTC
CTTTACATCTCATTCTCATGCTTTTCCTATTACATTACGGTATGTTTTACACACTTCTCTTCTTTCTCATAATCTTATTAGCATTGGTAAGTTGTGTCATGATAATCGTG
CCTTTGTTGAATTTCATCCAACTCTTTTTTTTTTTGTGAAAGATCTTCTATCCAAGACAATTCTTCTCACGGGTCATCTTGAAGAAGGTCTATACAAGTTGTTTGTCAAA
TTCACGTCCTTCTCTCATGATAAACAACTTCAACACCCTGTTGTTTTCCTCTCAACTCTCCAAGACACTTCTCTCTGGCACCGCCGCTTAGGACATCCTTCATTTTCCAT
TGTTCGACGTGTTCTTAGTAATTGTAATCTTCGGTTTAGCTCCTCCATAGAGCAATTTTGTAACTCTTGTCAATTGGCTAAGAATCATCGCCTTCCTTTTAGTTCTTCTT
CTTCTAAAACTCATGTACCTTTTGAACTTGTGTACTTAGATGCTTGGGGTGCTTCCCTTGTGAAATCTATTAATGGAGCTCGTTTTTTTTATCTTATTTGTTATGATTAT
ACTAGATATACCTGGCTATATCTGTTGCAATCAAAGCAAGATGTTCTCTCTATTTTTATTTTGTTCAAGGCAAAATTTAACACCAAAATAAAAGCTCTACAAACCAATGG
TGGGTCTGAGTTCGCCCCCTTATTCCTATTTTGCTATCCAATGGCATTAAAGATCGTATCTCTTGTCCCTATACTCTACAGCAGAATGGGAATGTTGAGAAGAAAAACCG
CCATGTTGTTGAAGTTGGCTTATCGCTTATTGCTCATCCCTTTCTTCCTCATGTCTACTGGTCTTTTGCCTTCCAAACTATAG
mRNA sequenceShow/hide mRNA sequence
ATGACATCGGATGTCAACAATTTACAACAGTCCACTCCTTATTTTGGTGGAGAGCAAGTTGTTATTGGCAATGGTAAGTCCATCCATGTCCTTAACATTGGTTCCTCTTC
CTTTACATCTCATTCTCATGCTTTTCCTATTACATTACGGTATGTTTTACACACTTCTCTTCTTTCTCATAATCTTATTAGCATTGGTAAGTTGTGTCATGATAATCGTG
CCTTTGTTGAATTTCATCCAACTCTTTTTTTTTTTGTGAAAGATCTTCTATCCAAGACAATTCTTCTCACGGGTCATCTTGAAGAAGGTCTATACAAGTTGTTTGTCAAA
TTCACGTCCTTCTCTCATGATAAACAACTTCAACACCCTGTTGTTTTCCTCTCAACTCTCCAAGACACTTCTCTCTGGCACCGCCGCTTAGGACATCCTTCATTTTCCAT
TGTTCGACGTGTTCTTAGTAATTGTAATCTTCGGTTTAGCTCCTCCATAGAGCAATTTTGTAACTCTTGTCAATTGGCTAAGAATCATCGCCTTCCTTTTAGTTCTTCTT
CTTCTAAAACTCATGTACCTTTTGAACTTGTGTACTTAGATGCTTGGGGTGCTTCCCTTGTGAAATCTATTAATGGAGCTCGTTTTTTTTATCTTATTTGTTATGATTAT
ACTAGATATACCTGGCTATATCTGTTGCAATCAAAGCAAGATGTTCTCTCTATTTTTATTTTGTTCAAGGCAAAATTTAACACCAAAATAAAAGCTCTACAAACCAATGG
TGGGTCTGAGTTCGCCCCCTTATTCCTATTTTGCTATCCAATGGCATTAAAGATCGTATCTCTTGTCCCTATACTCTACAGCAGAATGGGAATGTTGAGAAGAAAAACCG
CCATGTTGTTGAAGTTGGCTTATCGCTTATTGCTCATCCCTTTCTTCCTCATGTCTACTGGTCTTTTGCCTTCCAAACTATAG
Protein sequenceShow/hide protein sequence
MTSDVNNLQQSTPYFGGEQVVIGNGKSIHVLNIGSSSFTSHSHAFPITLRYVLHTSLLSHNLISIGKLCHDNRAFVEFHPTLFFFVKDLLSKTILLTGHLEEGLYKLFVK
FTSFSHDKQLQHPVVFLSTLQDTSLWHRRLGHPSFSIVRRVLSNCNLRFSSSIEQFCNSCQLAKNHRLPFSSSSSKTHVPFELVYLDAWGASLVKSINGARFFYLICYDY
TRYTWLYLLQSKQDVLSIFILFKAKFNTKIKALQTNGGSEFAPLFLFCYPMALKIVSLVPILYSRMGMLRRKTAMLLKLAYRLLLIPFFLMSTGLLPSKL