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Lag0038772 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038772
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr2:26301068..26301577
RNA-Seq ExpressionLag0038772
SyntenyLag0038772
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]1.0e-1841.45Show/hide
Query:  MRPSTFRRLSMPVGEEESTLSTPDVTRSSAFRRLNMAIGKEEGTFSTPNVTQPSVFQMLSVTTRRHKKEQSASSTAHQLQYEDAMKTDKIMKADREIRSA
        +RPS F+R+S  + ++ + +ST   TR SAF+RLN +  K      TP  T+ S F+ LSV+  R +K+ S S                ++  D EIRSA
Subjt:  MRPSTFRRLSMPVGEEESTLSTPDVTRSSAFRRLNMAIGKEEGTFSTPNVTQPSVFQMLSVTTRRHKKEQSASSTAHQLQYEDAMKTDKIMKADREIRSA

Query:  VPSRMKRKTLVTVDTDGSLKLKRRDVVITHPSKEDSDQEEEQASCLHITVEE
         PSRMKRK  V+V+T+GSLK+KR DVV T P   + + E + A C H+T+EE
Subjt:  VPSRMKRKTLVTVDTDGSLKLKRRDVVITHPSKEDSDQEEEQASCLHITVEE

KAA0050182.1 gag protease polyprotein [Cucumis melo var. makuwa]2.9e-1841.45Show/hide
Query:  MRPSTFRRLSMPVGEEESTLSTPDVTRSSAFRRLNMAIGKEEGTFSTPNVTQPSVFQMLSVTTRRHKKEQSASSTAHQLQYEDAMKTDKIMKADREIRSA
        +RPS F+R+S  + ++ + +ST   TR SAF+RLN    K +    TP  T+ S F+ LSV+  R +K+ S S                ++  D EIRSA
Subjt:  MRPSTFRRLSMPVGEEESTLSTPDVTRSSAFRRLNMAIGKEEGTFSTPNVTQPSVFQMLSVTTRRHKKEQSASSTAHQLQYEDAMKTDKIMKADREIRSA

Query:  VPSRMKRKTLVTVDTDGSLKLKRRDVVITHPSKEDSDQEEEQASCLHITVEE
         PSRMKRK  V+V+T+GSLK+KR DVV T P   + ++E + A C H+T+EE
Subjt:  VPSRMKRKTLVTVDTDGSLKLKRRDVVITHPSKEDSDQEEEQASCLHITVEE

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]1.0e-1841.45Show/hide
Query:  MRPSTFRRLSMPVGEEESTLSTPDVTRSSAFRRLNMAIGKEEGTFSTPNVTQPSVFQMLSVTTRRHKKEQSASSTAHQLQYEDAMKTDKIMKADREIRSA
        +RPS F+R+S  + ++ + +ST   TR SAF+RLN +  K      TP  T+ S F+ LSV+  R +K+ S S                ++  D EIRSA
Subjt:  MRPSTFRRLSMPVGEEESTLSTPDVTRSSAFRRLNMAIGKEEGTFSTPNVTQPSVFQMLSVTTRRHKKEQSASSTAHQLQYEDAMKTDKIMKADREIRSA

Query:  VPSRMKRKTLVTVDTDGSLKLKRRDVVITHPSKEDSDQEEEQASCLHITVEE
         PSRMKRK  V+V+T+GSLK+KR DVV T P   + + E + A C H+T+EE
Subjt:  VPSRMKRKTLVTVDTDGSLKLKRRDVVITHPSKEDSDQEEEQASCLHITVEE

TYK06199.1 uncharacterized protein E5676_scaffold287G00570 [Cucumis melo var. makuwa]1.0e-1841.45Show/hide
Query:  MRPSTFRRLSMPVGEEESTLSTPDVTRSSAFRRLNMAIGKEEGTFSTPNVTQPSVFQMLSVTTRRHKKEQSASSTAHQLQYEDAMKTDKIMKADREIRSA
        +RPS F+R+S  + ++ + +ST   TR SAF+RLN +  K      TP  T+ S F+ LSV+  R +K+ S S                ++  D EIRSA
Subjt:  MRPSTFRRLSMPVGEEESTLSTPDVTRSSAFRRLNMAIGKEEGTFSTPNVTQPSVFQMLSVTTRRHKKEQSASSTAHQLQYEDAMKTDKIMKADREIRSA

Query:  VPSRMKRKTLVTVDTDGSLKLKRRDVVITHPSKEDSDQEEEQASCLHITVEE
         PSRMKRK  V+V+T+GSLK+KR DVV T P   + + E + A C H+T+EE
Subjt:  VPSRMKRKTLVTVDTDGSLKLKRRDVVITHPSKEDSDQEEEQASCLHITVEE

TYK18071.1 uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]1.0e-1841.45Show/hide
Query:  MRPSTFRRLSMPVGEEESTLSTPDVTRSSAFRRLNMAIGKEEGTFSTPNVTQPSVFQMLSVTTRRHKKEQSASSTAHQLQYEDAMKTDKIMKADREIRSA
        +RPS F+R+S  + ++ + +ST   TR SAF+RLN +  K      TP  T+ S F+ LSV+  R +K+ S S                ++  D EIRSA
Subjt:  MRPSTFRRLSMPVGEEESTLSTPDVTRSSAFRRLNMAIGKEEGTFSTPNVTQPSVFQMLSVTTRRHKKEQSASSTAHQLQYEDAMKTDKIMKADREIRSA

Query:  VPSRMKRKTLVTVDTDGSLKLKRRDVVITHPSKEDSDQEEEQASCLHITVEE
         PSRMKRK  V+V+T+GSLK+KR DVV T P   + + E + A C H+T+EE
Subjt:  VPSRMKRKTLVTVDTDGSLKLKRRDVVITHPSKEDSDQEEEQASCLHITVEE

TrEMBL top hitse value%identityAlignment
A0A5A7TZU9 Ribonuclease H4.8e-1941.45Show/hide
Query:  MRPSTFRRLSMPVGEEESTLSTPDVTRSSAFRRLNMAIGKEEGTFSTPNVTQPSVFQMLSVTTRRHKKEQSASSTAHQLQYEDAMKTDKIMKADREIRSA
        +RPS F+R+S  + ++ + +ST   TR SAF+RLN +  K      TP  T+ S F+ LSV+  R +K+ S S                ++  D EIRSA
Subjt:  MRPSTFRRLSMPVGEEESTLSTPDVTRSSAFRRLNMAIGKEEGTFSTPNVTQPSVFQMLSVTTRRHKKEQSASSTAHQLQYEDAMKTDKIMKADREIRSA

Query:  VPSRMKRKTLVTVDTDGSLKLKRRDVVITHPSKEDSDQEEEQASCLHITVEE
         PSRMKRK  V+V+T+GSLK+KR DVV T P   + + E + A C H+T+EE
Subjt:  VPSRMKRKTLVTVDTDGSLKLKRRDVVITHPSKEDSDQEEEQASCLHITVEE

A0A5A7U2W9 Gag protease polyprotein1.4e-1841.45Show/hide
Query:  MRPSTFRRLSMPVGEEESTLSTPDVTRSSAFRRLNMAIGKEEGTFSTPNVTQPSVFQMLSVTTRRHKKEQSASSTAHQLQYEDAMKTDKIMKADREIRSA
        +RPS F+R+S  + ++ + +ST   TR SAF+RLN    K +    TP  T+ S F+ LSV+  R +K+ S S                ++  D EIRSA
Subjt:  MRPSTFRRLSMPVGEEESTLSTPDVTRSSAFRRLNMAIGKEEGTFSTPNVTQPSVFQMLSVTTRRHKKEQSASSTAHQLQYEDAMKTDKIMKADREIRSA

Query:  VPSRMKRKTLVTVDTDGSLKLKRRDVVITHPSKEDSDQEEEQASCLHITVEE
         PSRMKRK  V+V+T+GSLK+KR DVV T P   + ++E + A C H+T+EE
Subjt:  VPSRMKRKTLVTVDTDGSLKLKRRDVVITHPSKEDSDQEEEQASCLHITVEE

A0A5D3BIH8 Uncharacterized protein4.8e-1941.45Show/hide
Query:  MRPSTFRRLSMPVGEEESTLSTPDVTRSSAFRRLNMAIGKEEGTFSTPNVTQPSVFQMLSVTTRRHKKEQSASSTAHQLQYEDAMKTDKIMKADREIRSA
        +RPS F+R+S  + ++ + +ST   TR SAF+RLN +  K      TP  T+ S F+ LSV+  R +K+ S S                ++  D EIRSA
Subjt:  MRPSTFRRLSMPVGEEESTLSTPDVTRSSAFRRLNMAIGKEEGTFSTPNVTQPSVFQMLSVTTRRHKKEQSASSTAHQLQYEDAMKTDKIMKADREIRSA

Query:  VPSRMKRKTLVTVDTDGSLKLKRRDVVITHPSKEDSDQEEEQASCLHITVEE
         PSRMKRK  V+V+T+GSLK+KR DVV T P   + + E + A C H+T+EE
Subjt:  VPSRMKRKTLVTVDTDGSLKLKRRDVVITHPSKEDSDQEEEQASCLHITVEE

A0A5D3C783 Ribonuclease H4.8e-1941.45Show/hide
Query:  MRPSTFRRLSMPVGEEESTLSTPDVTRSSAFRRLNMAIGKEEGTFSTPNVTQPSVFQMLSVTTRRHKKEQSASSTAHQLQYEDAMKTDKIMKADREIRSA
        +RPS F+R+S  + ++ + +ST   TR SAF+RLN +  K      TP  T+ S F+ LSV+  R +K+ S S                ++  D EIRSA
Subjt:  MRPSTFRRLSMPVGEEESTLSTPDVTRSSAFRRLNMAIGKEEGTFSTPNVTQPSVFQMLSVTTRRHKKEQSASSTAHQLQYEDAMKTDKIMKADREIRSA

Query:  VPSRMKRKTLVTVDTDGSLKLKRRDVVITHPSKEDSDQEEEQASCLHITVEE
         PSRMKRK  V+V+T+GSLK+KR DVV T P   + + E + A C H+T+EE
Subjt:  VPSRMKRKTLVTVDTDGSLKLKRRDVVITHPSKEDSDQEEEQASCLHITVEE

A0A5D3D1E5 Ribonuclease H4.8e-1941.45Show/hide
Query:  MRPSTFRRLSMPVGEEESTLSTPDVTRSSAFRRLNMAIGKEEGTFSTPNVTQPSVFQMLSVTTRRHKKEQSASSTAHQLQYEDAMKTDKIMKADREIRSA
        +RPS F+R+S  + ++ + +ST   TR SAF+RLN +  K      TP  T+ S F+ LSV+  R +K+ S S                ++  D EIRSA
Subjt:  MRPSTFRRLSMPVGEEESTLSTPDVTRSSAFRRLNMAIGKEEGTFSTPNVTQPSVFQMLSVTTRRHKKEQSASSTAHQLQYEDAMKTDKIMKADREIRSA

Query:  VPSRMKRKTLVTVDTDGSLKLKRRDVVITHPSKEDSDQEEEQASCLHITVEE
         PSRMKRK  V+V+T+GSLK+KR DVV T P   + + E + A C H+T+EE
Subjt:  VPSRMKRKTLVTVDTDGSLKLKRRDVVITHPSKEDSDQEEEQASCLHITVEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCATTGGGGAAAAAGGGAGTACACTTTCAATTCCGGATGACATGAGACCTTCAACTTTTCGAAGGTTAAGTATGCCCGTTGGGGAAGAAGAGAGTACACTTTCAAC
TCCGGATGTCACACGGTCTTCAGCTTTTCGAAGGTTAAATATGGCCATTGGGAAAGAAGAGGGTACATTTTCAACTCCGAATGTGACTCAACCATCAGTTTTTCAAATGT
TAAGCGTTACCACGAGAAGACACAAAAAAGAGCAGTCTGCTTCGTCGACCGCTCACCAACTTCAATATGAAGATGCGATGAAAACTGACAAGATCATGAAGGCCGATAGA
GAAATTCGTAGTGCAGTTCCTTCACGAATGAAAAGAAAAACCCTTGTTACTGTCGATACGGATGGTTCTTTGAAGCTAAAGAGACGCGATGTTGTCATCACCCATCCTTC
AAAAGAAGATAGTGACCAGGAAGAAGAACAAGCCTCTTGCCTTCATATCACTGTTGAAGAAGAAACATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCATTGGGGAAAAAGGGAGTACACTTTCAATTCCGGATGACATGAGACCTTCAACTTTTCGAAGGTTAAGTATGCCCGTTGGGGAAGAAGAGAGTACACTTTCAAC
TCCGGATGTCACACGGTCTTCAGCTTTTCGAAGGTTAAATATGGCCATTGGGAAAGAAGAGGGTACATTTTCAACTCCGAATGTGACTCAACCATCAGTTTTTCAAATGT
TAAGCGTTACCACGAGAAGACACAAAAAAGAGCAGTCTGCTTCGTCGACCGCTCACCAACTTCAATATGAAGATGCGATGAAAACTGACAAGATCATGAAGGCCGATAGA
GAAATTCGTAGTGCAGTTCCTTCACGAATGAAAAGAAAAACCCTTGTTACTGTCGATACGGATGGTTCTTTGAAGCTAAAGAGACGCGATGTTGTCATCACCCATCCTTC
AAAAGAAGATAGTGACCAGGAAGAAGAACAAGCCTCTTGCCTTCATATCACTGTTGAAGAAGAAACATAG
Protein sequenceShow/hide protein sequence
MFIGEKGSTLSIPDDMRPSTFRRLSMPVGEEESTLSTPDVTRSSAFRRLNMAIGKEEGTFSTPNVTQPSVFQMLSVTTRRHKKEQSASSTAHQLQYEDAMKTDKIMKADR
EIRSAVPSRMKRKTLVTVDTDGSLKLKRRDVVITHPSKEDSDQEEEQASCLHITVEEET