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Lag0038773 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038773
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr2:26306322..26306738
RNA-Seq ExpressionLag0038773
SyntenyLag0038773
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032810.1 uncharacterized protein E6C27_scaffold708G00640 [Cucumis melo var. makuwa]2.9e-1642.97Show/hide
Query:  IEDVSESWTFVVRHKKQKQSYARKESRLFRDNKRNVKSQRKKGKKKSRRSKPVVEEGENFFCPPQPITLAEYFPRRFLGDSQGEALETIMCHIVDVVEDD
        IE+  E WT V   KK+K +  +KESR +R+ +R  K+Q+ K KKK+R+ K V EE ++F    + +TLA++FP RFLGD Q E    I CH ++  E++
Subjt:  IEDVSESWTFVVRHKKQKQSYARKESRLFRDNKRNVKSQRKKGKKKSRRSKPVVEEGENFFCPPQPITLAEYFPRRFLGDSQGEALETIMCHIVDVVEDD

Query:  DVPASSSGMVVGPGDLSSFSIKDLLSLP
         +P  S        DLS F++ DLLSLP
Subjt:  DVPASSSGMVVGPGDLSSFSIKDLLSLP

KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]1.2e-1741.48Show/hide
Query:  SQEKYVSIEDVSESWTFVVRHKKQKQSYARKESRLFRDNKRNVKSQRKKGKKKSRRSKPVVEEGENFFCPPQPITLAEYFPRRFLGDSQGEALETIMCHI
        SQEK   IE+  E WT V R KK+K +  +KE R +R+ ++  K+Q+ K KKK+R+ K + EE ++F    + +TLA++FP RFLGD Q E    + CH 
Subjt:  SQEKYVSIEDVSESWTFVVRHKKQKQSYARKESRLFRDNKRNVKSQRKKGKKKSRRSKPVVEEGENFFCPPQPITLAEYFPRRFLGDSQGEALETIMCHI

Query:  VDVVEDDDVPASSSGMVVGPGDLSSFSIKDLLSLP
        ++ +E++++P  S        DLS F++ DLLSLP
Subjt:  VDVVEDDDVPASSSGMVVGPGDLSSFSIKDLLSLP

KAA0043275.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.9e-1639.55Show/hide
Query:  SQEKYVSIEDVSESWTFVVRHKKQKQSYARKESRLFRDNKRNVKSQRKKGKKKSRRSKPVVEEGENFFCPPQPITLAEYFPRRFLGDSQGEALETIMCHI
        S+E+   I+D  E WT V R KK+KQ++++KESR +R+ +R  KSQR+K +K  R+  P++EE E      QPITL ++F   F       ++E + CH 
Subjt:  SQEKYVSIEDVSESWTFVVRHKKQKQSYARKESRLFRDNKRNVKSQRKKGKKKSRRSKPVVEEGENFFCPPQPITLAEYFPRRFLGDSQGEALETIMCHI

Query:  VDVVEDDDVPASSSGMVVGPGDLSSFSIKDLLSL
        +   +DD  P++S  +   P DL S  I DLL+L
Subjt:  VDVVEDDDVPASSSGMVVGPGDLSSFSIKDLLSL

KAA0056780.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.0e-1641.79Show/hide
Query:  QEKYVSIEDVSESWTFVVRHKKQKQSYARKESRLFRDNKRNVKSQRKKGKKKSRRSKPVVEEGENFFCPPQPITLAEYFPRRFLGDSQGEALETIMCHIV
        QEK  SIE   E WT V R KK+K +  +KE R +R+ +R  K+Q+ K KKK+++ K + EE ++F    + +TLA +FP RFL D Q E  E + CH +
Subjt:  QEKYVSIEDVSESWTFVVRHKKQKQSYARKESRLFRDNKRNVKSQRKKGKKKSRRSKPVVEEGENFFCPPQPITLAEYFPRRFLGDSQGEALETIMCHIV

Query:  DVVEDDDVPASSSGMVVGPGDLSSFSIKDLLSLP
        D +E++ +P  S        DL  F++ DLLSLP
Subjt:  DVVEDDDVPASSSGMVVGPGDLSSFSIKDLLSLP

TYK05005.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.9e-1642.22Show/hide
Query:  SQEKYVSIEDVSESWTFVVRHKKQKQSYARKESRLFRDNKRNVKSQRKKGKKKSRRSKPVVEEGENFFCPPQPITLAEYFPRRFLGDSQGEALETIMCHI
        SQEK   IE+  E WT V R KK+K +  +KE R +R+ +R  K+Q+ K KKK+R+ K + +E ++F    + ITLA++FP RFLGD Q E    + CH 
Subjt:  SQEKYVSIEDVSESWTFVVRHKKQKQSYARKESRLFRDNKRNVKSQRKKGKKKSRRSKPVVEEGENFFCPPQPITLAEYFPRRFLGDSQGEALETIMCHI

Query:  VDVVEDDDVPASSSGMVVGPGDLSSFSIKDLLSLP
        ++  E++ +P  S        DLS F++ DLLSLP
Subjt:  VDVVEDDDVPASSSGMVVGPGDLSSFSIKDLLSLP

TrEMBL top hitse value%identityAlignment
A0A5A7TPD2 Ty3-gypsy retrotransposon protein2.4e-1639.55Show/hide
Query:  SQEKYVSIEDVSESWTFVVRHKKQKQSYARKESRLFRDNKRNVKSQRKKGKKKSRRSKPVVEEGENFFCPPQPITLAEYFPRRFLGDSQGEALETIMCHI
        S+E+   I+D  E WT V R KK+KQ++++KESR +R+ +R  KSQR+K +K  R+  P++EE E      QPITL ++F   F       ++E + CH 
Subjt:  SQEKYVSIEDVSESWTFVVRHKKQKQSYARKESRLFRDNKRNVKSQRKKGKKKSRRSKPVVEEGENFFCPPQPITLAEYFPRRFLGDSQGEALETIMCHI

Query:  VDVVEDDDVPASSSGMVVGPGDLSSFSIKDLLSL
        +   +DD  P++S  +   P DL S  I DLL+L
Subjt:  VDVVEDDDVPASSSGMVVGPGDLSSFSIKDLLSL

A0A5D3BE72 Ty3-gypsy retrotransposon protein4.8e-1741.79Show/hide
Query:  QEKYVSIEDVSESWTFVVRHKKQKQSYARKESRLFRDNKRNVKSQRKKGKKKSRRSKPVVEEGENFFCPPQPITLAEYFPRRFLGDSQGEALETIMCHIV
        QEK  SIE   E WT V R KK+K +  +KE R +R+ +R  K+Q+ K KKK+++ K + EE ++F    + +TLA +FP RFL D Q E  E + CH +
Subjt:  QEKYVSIEDVSESWTFVVRHKKQKQSYARKESRLFRDNKRNVKSQRKKGKKKSRRSKPVVEEGENFFCPPQPITLAEYFPRRFLGDSQGEALETIMCHIV

Query:  DVVEDDDVPASSSGMVVGPGDLSSFSIKDLLSLP
        D +E++ +P  S        DL  F++ DLLSLP
Subjt:  DVVEDDDVPASSSGMVVGPGDLSSFSIKDLLSLP

A0A5D3BSG5 Uncharacterized protein5.7e-1841.48Show/hide
Query:  SQEKYVSIEDVSESWTFVVRHKKQKQSYARKESRLFRDNKRNVKSQRKKGKKKSRRSKPVVEEGENFFCPPQPITLAEYFPRRFLGDSQGEALETIMCHI
        SQEK   IE+  E WT V R KK+K +  +KE R +R+ ++  K+Q+ K KKK+R+ K + EE ++F    + +TLA++FP RFLGD Q E    + CH 
Subjt:  SQEKYVSIEDVSESWTFVVRHKKQKQSYARKESRLFRDNKRNVKSQRKKGKKKSRRSKPVVEEGENFFCPPQPITLAEYFPRRFLGDSQGEALETIMCHI

Query:  VDVVEDDDVPASSSGMVVGPGDLSSFSIKDLLSLP
        ++ +E++++P  S        DLS F++ DLLSLP
Subjt:  VDVVEDDDVPASSSGMVVGPGDLSSFSIKDLLSLP

A0A5D3C0W6 Ty3-gypsy retrotransposon protein1.4e-1642.22Show/hide
Query:  SQEKYVSIEDVSESWTFVVRHKKQKQSYARKESRLFRDNKRNVKSQRKKGKKKSRRSKPVVEEGENFFCPPQPITLAEYFPRRFLGDSQGEALETIMCHI
        SQEK   IE+  E WT V R KK+K +  +KE R +R+ +R  K+Q+ K KKK+R+ K + +E ++F    + ITLA++FP RFLGD Q E    + CH 
Subjt:  SQEKYVSIEDVSESWTFVVRHKKQKQSYARKESRLFRDNKRNVKSQRKKGKKKSRRSKPVVEEGENFFCPPQPITLAEYFPRRFLGDSQGEALETIMCHI

Query:  VDVVEDDDVPASSSGMVVGPGDLSSFSIKDLLSLP
        ++  E++ +P  S        DLS F++ DLLSLP
Subjt:  VDVVEDDDVPASSSGMVVGPGDLSSFSIKDLLSLP

A0A5D3E3J4 Uncharacterized protein1.4e-1642.97Show/hide
Query:  IEDVSESWTFVVRHKKQKQSYARKESRLFRDNKRNVKSQRKKGKKKSRRSKPVVEEGENFFCPPQPITLAEYFPRRFLGDSQGEALETIMCHIVDVVEDD
        IE+  E WT V   KK+K +  +KESR +R+ +R  K+Q+ K KKK+R+ K V EE ++F    + +TLA++FP RFLGD Q E    I CH ++  E++
Subjt:  IEDVSESWTFVVRHKKQKQSYARKESRLFRDNKRNVKSQRKKGKKKSRRSKPVVEEGENFFCPPQPITLAEYFPRRFLGDSQGEALETIMCHIVDVVEDD

Query:  DVPASSSGMVVGPGDLSSFSIKDLLSLP
         +P  S        DLS F++ DLLSLP
Subjt:  DVPASSSGMVVGPGDLSSFSIKDLLSLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGATCCCAAGAAAAATATGTTTCCATCGAAGATGTGAGCGAAAGTTGGACCTTTGTCGTTCGTCACAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCTCG
CCTATTTCGAGACAATAAAAGAAATGTTAAATCCCAAAGGAAGAAGGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAGGTGAAAATTTCTTTTGCCCTC
CACAACCCATAACTTTGGCAGAATACTTTCCAAGGCGCTTTCTCGGTGATAGTCAAGGAGAGGCACTTGAAACTATCATGTGTCACATTGTGGACGTGGTGGAAGATGAT
GATGTCCCTGCTAGCTCCTCGGGAATGGTGGTAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGATTTACTGTCACTTCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGATCCCAAGAAAAATATGTTTCCATCGAAGATGTGAGCGAAAGTTGGACCTTTGTCGTTCGTCACAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCTCG
CCTATTTCGAGACAATAAAAGAAATGTTAAATCCCAAAGGAAGAAGGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAGGTGAAAATTTCTTTTGCCCTC
CACAACCCATAACTTTGGCAGAATACTTTCCAAGGCGCTTTCTCGGTGATAGTCAAGGAGAGGCACTTGAAACTATCATGTGTCACATTGTGGACGTGGTGGAAGATGAT
GATGTCCCTGCTAGCTCCTCGGGAATGGTGGTAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGATTTACTGTCACTTCCTTAG
Protein sequenceShow/hide protein sequence
MKGSQEKYVSIEDVSESWTFVVRHKKQKQSYARKESRLFRDNKRNVKSQRKKGKKKSRRSKPVVEEGENFFCPPQPITLAEYFPRRFLGDSQGEALETIMCHIVDVVEDD
DVPASSSGMVVGPGDLSSFSIKDLLSLP