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Lag0038816 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038816
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr2:27654062..27655027
RNA-Seq ExpressionLag0038816
SyntenyLag0038816
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023522102.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111785979 [Cucurbita pepo subsp. pepo]1.3e-1939.13Show/hide
Query:  MVDASTGGDLLAKTFNEAYEILERISTYRCQWSNVRGS-SKKVKSVIEVDGVSTIRANIAALANALKNIIVVSNVQQSPVVESAADVGVTTPTLHGEGKE
        +VDAS  G +L+KT+NEAYEILERI++  CQW++VR +  +K + V+EVD +S+I A +A++ N L+N+ +  +      V +AA +  T        KE
Subjt:  MVDASTGGDLLAKTFNEAYEILERISTYRCQWSNVRGS-SKKVKSVIEVDGVSTIRANIAALANALKNIIVVSNVQQSPVVESAADVGVTTPTLHGEGKE

Query:  EIRKPPST------------AKVGQLANELKAQPQGNIPSDIEHPRREGKKNVHAVTLRSG
         + K  +              +VGQLANEL+ +P   +P+D E P+REG +   A+ LRSG
Subjt:  EIRKPPST------------AKVGQLANELKAQPQGNIPSDIEHPRREGKKNVHAVTLRSG

XP_030494802.1 uncharacterized protein LOC115710583 [Cannabis sativa]4.8e-1431.03Show/hide
Query:  MVDASTGGDLLAKTFNEAYEILERISTYRCQWSNVRG-SSKKVKSVIEVDGVSTIRANIAALANALKNIIVVSNVQQSPVVE------------------
        ++DAS  G +L+K++NEA+EILERI++   QWS  R  +S+KV  V+EVD ++ + A +A++ N LKN+ +  +VQ +  ++                  
Subjt:  MVDASTGGDLLAKTFNEAYEILERISTYRCQWSNVRG-SSKKVKSVIEVDGVSTIRANIAALANALKNIIVVSNVQQSPVVE------------------

Query:  -----SAADVGVTTP-TLHGEGKEEIRKPPSTA----------------------------------------------KVGQLANELKAQPQGNIPSDI
             S   VG ++      +GK+    PP  +                                              ++GQLAN+LK +PQG +PSD 
Subjt:  -----SAADVGVTTP-TLHGEGKEEIRKPPSTA----------------------------------------------KVGQLANELKAQPQGNIPSDI

Query:  EHPRREGKKNVHAVTLRSGAGGSNNDAGASGS
        E+PRR+GK++  AVTLRSG    +N A A+GS
Subjt:  EHPRREGKKNVHAVTLRSGAGGSNNDAGASGS

XP_030494811.1 uncharacterized protein LOC115710592 [Cannabis sativa]3.0e-1634.03Show/hide
Query:  MVDASTGGDLLAKTFNEAYEILERISTYRCQWSNVRG-SSKKVKSVIEVDGVSTIRANIAALANALKNIIVVSNVQQSPVVESAADVGVTTPTLHGEGKE
        ++DAS  G +L+K++NE +EILERI++ + QWS  R  +S+KV  V+EVD ++T+ A +A++ N LKN+ +  +VQ +  ++      ++     G+G  
Subjt:  MVDASTGGDLLAKTFNEAYEILERISTYRCQWSNVRG-SSKKVKSVIEVDGVSTIRANIAALANALKNIIVVSNVQQSPVVESAADVGVTTPTLHGEGKE

Query:  EIRKPPSTAKVGQL-----------------------------ANELKAQPQGNIPSDIEHPRREGKKNVHAVTLRSGAGGSNNDAGASGS
            P + A V  +                             AN+LK +PQG +PSD ++PRR+GK++  AVTLRSG     N A   GS
Subjt:  EIRKPPSTAKVGQL-----------------------------ANELKAQPQGNIPSDIEHPRREGKKNVHAVTLRSGAGGSNNDAGASGS

XP_030497888.1 uncharacterized protein LOC115713544 [Cannabis sativa]1.4e-1328.87Show/hide
Query:  MVDASTGGDLLAKTFNEAYEILERISTYRCQWS-NVRGSSKKVKSVIEVDGVSTIRANIAALANALKNIIVVSNVQQSPVVESAADVGV-----------
        ++DAS  G +L+K++NEA+EILERI++   QWS N   +S+KV  V+EVD ++ + A +A++ N LKN+ +  ++Q +  ++ A    V           
Subjt:  MVDASTGGDLLAKTFNEAYEILERISTYRCQWS-NVRGSSKKVKSVIEVDGVSTIRANIAALANALKNIIVVSNVQQSPVVESAADVGV-----------

Query:  -TTPTLH-----------------GEGK---------------------------EEIRKPPST-----------------AKVGQLANELKAQPQGNIP
         + PT H                  +GK                           E + +  +T                  ++GQLAN+LK++PQG +P
Subjt:  -TTPTLH-----------------GEGK---------------------------EEIRKPPST-----------------AKVGQLANELKAQPQGNIP

Query:  SDIEHPRREGKKNVHAVTLRSGAGGSNNDAGASGSIPDV
        SD ++PRR+GK++  AV LRSG    +N A      P +
Subjt:  SDIEHPRREGKKNVHAVTLRSGAGGSNNDAGASGSIPDV

XP_030509265.1 uncharacterized protein LOC115723943 [Cannabis sativa]1.3e-1432.64Show/hide
Query:  MVDASTGGDLLAKTFNEAYEILERISTYRCQWSNVRG-SSKKVKSVIEVDGVSTIRANIAALANALKNIIVVSNVQQSPVV----ESAADVGVTTPTLHG
        ++DAS  G +L+K++NEA+EILE I++   QWSN R  +S+KV  V+EVD ++ + A +A++ N   N+        S         A   G +    H 
Subjt:  MVDASTGGDLLAKTFNEAYEILERISTYRCQWSNVRG-SSKKVKSVIEVDGVSTIRANIAALANALKNIIVVSNVQQSPVV----ESAADVGVTTPTLHG

Query:  EGKEEIRKPPST---------------------------AKVGQLANELKAQPQGNIPSDIEHPRREGKKNVHAVTLRSGAGGSNNDAGASGS
        +  +  +  PS+                            ++G LANELKA+PQG++PSD E+PRR+GK+   ++ LRSG    N++    GS
Subjt:  EGKEEIRKPPST---------------------------AKVGQLANELKAQPQGNIPSDIEHPRREGKKNVHAVTLRSGAGGSNNDAGASGS

TrEMBL top hitse value%identityAlignment
A0A5B6VNY6 Gag-asp_proteas domain-containing protein4.8e-1235.71Show/hide
Query:  MVDASTGGDLLAKTFNEAYEILERISTYRCQW-SNVRGSSKKVKSVIEVDGVSTIRANIAALANALKNIIVVSNVQQSPVVESAADVGVTTPTLHGEGKE
        +VDAS  G LL+K++NEAY I++RI++  CQW +N   S ++V  V EVD ++++ A++ ++++ LK     +N       +      V +     +   
Subjt:  MVDASTGGDLLAKTFNEAYEILERISTYRCQW-SNVRGSSKKVKSVIEVDGVSTIRANIAALANALKNIIVVSNVQQSPVVESAADVGVTTPTLHGEGKE

Query:  EIRKPPSTA-----KVGQLANELKAQPQGNIPSDIEHPRREGKKNVHAVTLRSG
         I+   +T      KVGQLA EL+  PQG  PSD+++PR  GK++   V LRSG
Subjt:  EIRKPPSTA-----KVGQLANELKAQPQGNIPSDIEHPRREGKKNVHAVTLRSG

A0A6J1EEI2 uncharacterized protein LOC1114333945.9e-1034.31Show/hide
Query:  MVDASTGGDLLAKTFNEAYEILERISTYRCQWSNVRGS-SKKVKSVIEVDGVSTIRANIAALANALKNIIVVSNVQQSPVVESAADVGVTTP---TLHGE
        +VDAS  G +L+KT+NEAYEILERI++  CQW++VR +  +K + V+EVD +S+I A +A++ N L+N+ +  +      V + A +  T        GE
Subjt:  MVDASTGGDLLAKTFNEAYEILERISTYRCQWSNVRGS-SKKVKSVIEVDGVSTIRANIAALANALKNIIVVSNVQQSPVVESAADVGVTTP---TLHGE

Query:  GKEEIRKPPSTAKVGQLANEL-KAQPQGNIPSDIEHP
             + P + A +  + N+  +  P+ N  S+  +P
Subjt:  GKEEIRKPPSTAKVGQLANEL-KAQPQGNIPSDIEHP

A0A6J1EQ90 uncharacterized protein LOC1114364111.2e-1035.61Show/hide
Query:  MVDASTGGDLLAKTFNEAYEILERISTYRCQWSNVRGS-SKKVKSVIEVDGVSTIRANIAALANALKNIIVVSNVQQSPVVESAADVGVTTP---TLHGE
        +VDAS  G +L+KT+NEAYEILERI++  CQW++VR +  +K + V+EVD +S+I A +A++ N L+N+ +  +      V +AA +  T        GE
Subjt:  MVDASTGGDLLAKTFNEAYEILERISTYRCQWSNVRGS-SKKVKSVIEVDGVSTIRANIAALANALKNIIVVSNVQQSPVVESAADVGVTTP---TLHGE

Query:  GKEEIRKPPSTAKVGQLANELKAQPQGNIPSD
             + P + A +  + N+     QGN+ ++
Subjt:  GKEEIRKPPSTAKVGQLANELKAQPQGNIPSD

A0A6J1G7Q6 uncharacterized protein LOC1114515983.5e-1033.33Show/hide
Query:  MVDASTGGDLLAKTFNEAYEILERISTYRCQWSNVRGS-SKKVKSVIEVDGVSTIRANIAALANALKNIIV-VSNVQQSPVVESAADVGVTTPT--LHGE
        +VDAS  GD+L+KT+NEAYEILERI++  CQW +VR +  KK + V+EVD +S+I A +A++ N L+N+     ++ ++P   +   +   T +    GE
Subjt:  MVDASTGGDLLAKTFNEAYEILERISTYRCQWSNVRGS-SKKVKSVIEVDGVSTIRANIAALANALKNIIV-VSNVQQSPVVESAADVGVTTPT--LHGE

Query:  GKEEIRKPPSTAKVGQLANEL-KAQPQGNIPSDIEHPRREGKKNVHAVTLRSGAGGSNNDAGASGSIP
             + P + A +  + N+  +  P+ N  S+  +P   G +N H   L  G G  N       + P
Subjt:  GKEEIRKPPSTAKVGQLANEL-KAQPQGNIPSDIEHPRREGKKNVHAVTLRSGAGGSNNDAGASGSIP

A0A6J1H7E4 uncharacterized protein LOC1114611683.5e-1036.64Show/hide
Query:  MVDASTGGDLLAKTFNEAYEILERISTYRCQWSNVRGS-SKKVKSVIEVDGVSTIRANIAALANALKNIIVVSNVQ-QSPVVESAADVGVTTPTLHGEGK
        +VDAS  G +L+KT+NEAYEILERI++  CQW++VR +  KK + V+EVD +S+I A +A++ N L+N+        ++P   +A      T +    G+
Subjt:  MVDASTGGDLLAKTFNEAYEILERISTYRCQWSNVRGS-SKKVKSVIEVDGVSTIRANIAALANALKNIIVVSNVQ-QSPVVESAADVGVTTPTLHGEGK

Query:  EEI--RKPPSTAKVGQLANELKAQPQGNIPS
        E    + P + A +  + N+     Q N PS
Subjt:  EEI--RKPPSTAKVGQLANELKAQPQGNIPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGATGCTTCTACGGGAGGGGACCTTTTGGCAAAAACCTTTAATGAAGCTTATGAGATTTTAGAGAGAATATCAACCTACAGATGTCAATGGTCAAATGTTAGAGG
CTCTAGTAAGAAAGTTAAGAGTGTGATAGAAGTTGATGGTGTGTCTACCATTAGGGCCAATATTGCTGCATTAGCTAACGCTCTTAAAAACATAATTGTGGTAAGCAATG
TTCAGCAGTCGCCAGTGGTGGAATCTGCTGCAGATGTTGGCGTAACCACCCCAACTTTGCATGGGGAGGGCAAGGAAGAAATTCGCAAGCCCCCAAGCACAGCAAAAGTG
GGCCAGCTAGCTAATGAGCTGAAGGCACAACCTCAAGGGAACATTCCTTCAGATATTGAACACCCTAGAAGGGAAGGTAAGAAGAATGTGCATGCAGTGACTTTAAGGAG
TGGTGCTGGAGGCAGCAATAATGATGCTGGAGCATCTGGTTCTATTCCAGATGTGAAACCACCTTATGTACCGCCCCCACCCTATAACCCCCCTTACCTTTTCCACAAAG
ACAAAACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGATGCTTCTACGGGAGGGGACCTTTTGGCAAAAACCTTTAATGAAGCTTATGAGATTTTAGAGAGAATATCAACCTACAGATGTCAATGGTCAAATGTTAGAGG
CTCTAGTAAGAAAGTTAAGAGTGTGATAGAAGTTGATGGTGTGTCTACCATTAGGGCCAATATTGCTGCATTAGCTAACGCTCTTAAAAACATAATTGTGGTAAGCAATG
TTCAGCAGTCGCCAGTGGTGGAATCTGCTGCAGATGTTGGCGTAACCACCCCAACTTTGCATGGGGAGGGCAAGGAAGAAATTCGCAAGCCCCCAAGCACAGCAAAAGTG
GGCCAGCTAGCTAATGAGCTGAAGGCACAACCTCAAGGGAACATTCCTTCAGATATTGAACACCCTAGAAGGGAAGGTAAGAAGAATGTGCATGCAGTGACTTTAAGGAG
TGGTGCTGGAGGCAGCAATAATGATGCTGGAGCATCTGGTTCTATTCCAGATGTGAAACCACCTTATGTACCGCCCCCACCCTATAACCCCCCTTACCTTTTCCACAAAG
ACAAAACCTAA
Protein sequenceShow/hide protein sequence
MVDASTGGDLLAKTFNEAYEILERISTYRCQWSNVRGSSKKVKSVIEVDGVSTIRANIAALANALKNIIVVSNVQQSPVVESAADVGVTTPTLHGEGKEEIRKPPSTAKV
GQLANELKAQPQGNIPSDIEHPRREGKKNVHAVTLRSGAGGSNNDAGASGSIPDVKPPYVPPPPYNPPYLFHKDKT