; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0038838 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038838
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr2:28787564..28788031
RNA-Seq ExpressionLag0038838
SyntenyLag0038838
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066512.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-0427.91Show/hide
Query:  IDAASGGSMMNKSPMEVRDIIVNLAERERQSSVKQDDQIASLAKKVKNLEVKLDKLIELVNSLADRLEVRV-NCSSCTTIGDSSGYHPEVQQS-------
        +DA +GG++ NK+P E  ++I+ +AE  +    +  +   SL K+V  L+ ++  +  L+ S      ++V  C  C  +G  +   PEV +        
Subjt:  IDAASGGSMMNKSPMEVRDIIVNLAERERQSSVKQDDQIASLAKKVKNLEVKLDKLIELVNSLADRLEVRV-NCSSCTTIGDSSGYHPEVQQS-------

Query:  ---GNSLENLIRTIAETTPSFQQDVRNNM
           G +LE++I+ +A  T SFQQ+++  M
Subjt:  ---GNSLENLIRTIAETTPSFQQDVRNNM

KAE8665021.1 ocs element-binding factor 1-like [Hibiscus syriacus]9.8e-0530.88Show/hide
Query:  AASGGSMMNKSPMEVRDIIVNLAERERQSSVKQDDQIASLAK-KVKNLEVKLDKLIELVNSLADRLEVRVN-CSSCTTIGDSSGYHPEVQQSGNSLENLI
        AASGG+++NK+P + R++I   A   +Q   +QD  +  + +    ++E +L  L  LV  L      +V  C  C TI             G SLE ++
Subjt:  AASGGSMMNKSPMEVRDIIVNLAERERQSSVKQDDQIASLAK-KVKNLEVKLDKLIELVNSLADRLEVRVN-CSSCTTIGDSSGYHPEVQQSGNSLENLI

Query:  RTIAETTPSFQQDVRNNMQNQEHQVTLLSNRLVQLE
        +++A  T  FQQ+ R ++QN E+Q++ L++ + +LE
Subjt:  RTIAETTPSFQQDVRNNMQNQEHQVTLLSNRLVQLE

KAE8678287.1 hypothetical protein F3Y22_tig00111427pilonHSYRG00326 [Hibiscus syriacus]5.8e-0528.87Show/hide
Query:  IDAASGGSMMNKSPMEVRDIIVNLAERERQSSVKQDDQIASLAKKVK--NLEVKLDKLIELVNSLADRLEVRVNCSSCTTIGDSSGYHPEVQQS----GN
        +DA SGG+++ K+P +VR++I N+A   +Q   ++D     + ++VK   +   +   I++   L D      N         S   H   +QS    G 
Subjt:  IDAASGGSMMNKSPMEVRDIIVNLAERERQSSVKQDDQIASLAKKVK--NLEVKLDKLIELVNSLADRLEVRVNCSSCTTIGDSSGYHPEVQQS----GN

Query:  SLENLIRTIAETTPSFQQDVRNNMQNQEHQVTLLSNRLVQLE
        SLE  ++++A  T  FQQ+ R ++QN E+Q++ L++ + +LE
Subjt:  SLENLIRTIAETTPSFQQDVRNNMQNQEHQVTLLSNRLVQLE

KYP78459.1 hypothetical protein KK1_049209 [Cajanus cajan]8.0e-0730.41Show/hide
Query:  IDAASGGSMMNKSPMEVRDIIVNLAERERQ------SSVKQDDQIASLAKKVKNLEVKLDKLIELVNSLADRLEVRVNCSSCTTIGDSSGYHPEVQQSGN
        IDAASGG++M+K+P   +D+I N+A   +Q      +S +  +++   + + + LE +LD+L  LV  LA   +              S   P+ QQ+  
Subjt:  IDAASGGSMMNKSPMEVRDIIVNLAERERQ------SSVKQDDQIASLAKKVKNLEVKLDKLIELVNSLADRLEVRVNCSSCTTIGDSSGYHPEVQQSGN

Query:  SLENLIRTIAETTPSFQQDVRNNMQNQEHQVTLLSNRLVQLEVELQSR
        SLE+L++ +A     FQQ    ++QN E QV  +++ + QL+ +  S+
Subjt:  SLENLIRTIAETTPSFQQDVRNNMQNQEHQVTLLSNRLVQLEVELQSR

XP_024964659.1 uncharacterized protein LOC112504936 [Cynara cardunculus var. scolymus]1.5e-0530.67Show/hide
Query:  DAASGGSMMNKSPMEVRDIIVNLAERERQSSVKQD----DQIASLAKKVKNLEVKLDKLIELVNSLADRLEVRVNCSSCTTIGDSSGYHPEVQQ------
        DAASGG+M NK+P EVR +I  +AE  +  SV+ D     Q A++   V ++E +L  L  +V  L    E    C  C  +G  +   P++Q+      
Subjt:  DAASGGSMMNKSPMEVRDIIVNLAERERQSSVKQD----DQIASLAKKVKNLEVKLDKLIELVNSLADRLEVRVNCSSCTTIGDSSGYHPEVQQ------

Query:  ------------------SGNSLENLIRTIAETTPSFQQDVRNNMQNQEHQVTLLSNRLVQLE
                          SG SLE++++ +A  T  FQQ    ++QN   Q+T L+  + +LE
Subjt:  ------------------SGNSLENLIRTIAETTPSFQQDVRNNMQNQEHQVTLLSNRLVQLE

TrEMBL top hitse value%identityAlignment
A0A151UGQ6 Retrotrans_gag domain-containing protein3.9e-0730.41Show/hide
Query:  IDAASGGSMMNKSPMEVRDIIVNLAERERQ------SSVKQDDQIASLAKKVKNLEVKLDKLIELVNSLADRLEVRVNCSSCTTIGDSSGYHPEVQQSGN
        IDAASGG++M+K+P   +D+I N+A   +Q      +S +  +++   + + + LE +LD+L  LV  LA   +              S   P+ QQ+  
Subjt:  IDAASGGSMMNKSPMEVRDIIVNLAERERQ------SSVKQDDQIASLAKKVKNLEVKLDKLIELVNSLADRLEVRVNCSSCTTIGDSSGYHPEVQQSGN

Query:  SLENLIRTIAETTPSFQQDVRNNMQNQEHQVTLLSNRLVQLEVELQSR
        SLE+L++ +A     FQQ    ++QN E QV  +++ + QL+ +  S+
Subjt:  SLENLIRTIAETTPSFQQDVRNNMQNQEHQVTLLSNRLVQLEVELQSR

A0A5A7USL5 Retrotrans_gag domain-containing protein1.4e-0427.91Show/hide
Query:  IDAASGGSMMNKSPMEVRDIIVNLAERERQSSVKQDDQIASLAKKVKNLEVKLDKLIELVNSLADRLEVRV-NCSSCTTIGDSSGYHPEVQQS-------
        +DAA+GG++ +K+P E R +I  + E  +    +  +   SL K+V  L+ ++  +  L+ S      ++V  C  C  +G  +   PEV +        
Subjt:  IDAASGGSMMNKSPMEVRDIIVNLAERERQSSVKQDDQIASLAKKVKNLEVKLDKLIELVNSLADRLEVRV-NCSSCTTIGDSSGYHPEVQQS-------

Query:  ---GNSLENLIRTIAETTPSFQQDVRNNM
           G +LE++I+ +A  T SFQQ+++  M
Subjt:  ---GNSLENLIRTIAETTPSFQQDVRNNM

A0A5D3C4I5 Retrotransposon gag protein6.2e-0527.91Show/hide
Query:  IDAASGGSMMNKSPMEVRDIIVNLAERERQSSVKQDDQIASLAKKVKNLEVKLDKLIELVNSLADRLEVRV-NCSSCTTIGDSSGYHPEVQQS-------
        +DA +GG++ NK+P E  ++I+ +AE  +    +  +   SL K+V  L+ ++  +  L+ S      ++V  C  C  +G  +   PEV +        
Subjt:  IDAASGGSMMNKSPMEVRDIIVNLAERERQSSVKQDDQIASLAKKVKNLEVKLDKLIELVNSLADRLEVRV-NCSSCTTIGDSSGYHPEVQQS-------

Query:  ---GNSLENLIRTIAETTPSFQQDVRNNM
           G +LE++I+ +A  T SFQQ+++  M
Subjt:  ---GNSLENLIRTIAETTPSFQQDVRNNM

A0A6A2WV69 Ocs element-binding factor 1-like4.8e-0530.88Show/hide
Query:  AASGGSMMNKSPMEVRDIIVNLAERERQSSVKQDDQIASLAK-KVKNLEVKLDKLIELVNSLADRLEVRVN-CSSCTTIGDSSGYHPEVQQSGNSLENLI
        AASGG+++NK+P + R++I   A   +Q   +QD  +  + +    ++E +L  L  LV  L      +V  C  C TI             G SLE ++
Subjt:  AASGGSMMNKSPMEVRDIIVNLAERERQSSVKQDDQIASLAK-KVKNLEVKLDKLIELVNSLADRLEVRVN-CSSCTTIGDSSGYHPEVQQSGNSLENLI

Query:  RTIAETTPSFQQDVRNNMQNQEHQVTLLSNRLVQLE
        +++A  T  FQQ+ R ++QN E+Q++ L++ + +LE
Subjt:  RTIAETTPSFQQDVRNNMQNQEHQVTLLSNRLVQLE

A0A6A2YK65 Uncharacterized protein2.8e-0528.87Show/hide
Query:  IDAASGGSMMNKSPMEVRDIIVNLAERERQSSVKQDDQIASLAKKVK--NLEVKLDKLIELVNSLADRLEVRVNCSSCTTIGDSSGYHPEVQQS----GN
        +DA SGG+++ K+P +VR++I N+A   +Q   ++D     + ++VK   +   +   I++   L D      N         S   H   +QS    G 
Subjt:  IDAASGGSMMNKSPMEVRDIIVNLAERERQSSVKQDDQIASLAKKVK--NLEVKLDKLIELVNSLADRLEVRVNCSSCTTIGDSSGYHPEVQQS----GN

Query:  SLENLIRTIAETTPSFQQDVRNNMQNQEHQVTLLSNRLVQLE
        SLE  ++++A  T  FQQ+ R ++QN E+Q++ L++ + +LE
Subjt:  SLENLIRTIAETTPSFQQDVRNNMQNQEHQVTLLSNRLVQLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGATCGACGCAGCTAGTGGAGGCTCCATGATGAACAAGTCACCAATGGAAGTGAGAGATATCATAGTCAACCTGGCAGAGAGGGAACGCCAGAGTAGCGTTAAACA
AGATGACCAGATAGCATCCTTAGCTAAAAAGGTAAAGAATTTAGAGGTCAAGTTAGACAAGCTAATCGAATTGGTTAATTCTCTTGCAGATAGACTCGAGGTGAGGGTAA
ATTGCAGCAGTTGTACAACCATTGGTGATTCATCAGGCTACCACCCTGAGGTTCAGCAGTCAGGTAATTCTTTAGAAAATCTCATTAGAACTATAGCTGAAACCACTCCA
TCTTTTCAGCAGGATGTGCGAAACAACATGCAAAATCAGGAACACCAAGTTACCCTGTTGAGTAATCGCCTGGTCCAGTTAGAGGTTGAGCTTCAATCAAGGGCAGACGT
TGAGGAATGTTCTACTTCAGCACCATAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGATCGACGCAGCTAGTGGAGGCTCCATGATGAACAAGTCACCAATGGAAGTGAGAGATATCATAGTCAACCTGGCAGAGAGGGAACGCCAGAGTAGCGTTAAACA
AGATGACCAGATAGCATCCTTAGCTAAAAAGGTAAAGAATTTAGAGGTCAAGTTAGACAAGCTAATCGAATTGGTTAATTCTCTTGCAGATAGACTCGAGGTGAGGGTAA
ATTGCAGCAGTTGTACAACCATTGGTGATTCATCAGGCTACCACCCTGAGGTTCAGCAGTCAGGTAATTCTTTAGAAAATCTCATTAGAACTATAGCTGAAACCACTCCA
TCTTTTCAGCAGGATGTGCGAAACAACATGCAAAATCAGGAACACCAAGTTACCCTGTTGAGTAATCGCCTGGTCCAGTTAGAGGTTGAGCTTCAATCAAGGGCAGACGT
TGAGGAATGTTCTACTTCAGCACCATAG
Protein sequenceShow/hide protein sequence
MWIDAASGGSMMNKSPMEVRDIIVNLAERERQSSVKQDDQIASLAKKVKNLEVKLDKLIELVNSLADRLEVRVNCSSCTTIGDSSGYHPEVQQSGNSLENLIRTIAETTP
SFQQDVRNNMQNQEHQVTLLSNRLVQLEVELQSRADVEECSTSAP