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Lag0038848 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038848
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibulose bisphosphate carboxylase large chain
Genome locationchr2:29055045..29055925
RNA-Seq ExpressionLag0038848
SyntenyLag0038848
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
InterPro domainsIPR000685 - Ribulose bisphosphate carboxylase, large subunit, C-terminal
IPR033966 - RuBisCO
IPR036376 - Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAC49723.2 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Aphyllon fasciculatum]1.5e-3192.11Show/hide
Query:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACELS
        M ALTEIFGDDSVLQFGGGTLGHPWGNAPGA+ANRVALEACVQARNEGRDLAHEGN II EASKWSPE AAACE S
Subjt:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACELS
CAB39538.1 large subunit of ribulose biphosphate carboxylase/oxygenase, partial [Abroma augustum]4.0e-3294.67Show/hide
Query:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACEL
        M ALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEII EASKWSPE AAACE+
Subjt:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACEL
KAG6540609.1 hypothetical protein Mapa_017938 [Marchantia paleacea]6.9e-3275Show/hide
Query:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACELSSWDNQFSHYYLKSGRILPLQTKEG
        M ALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLA +GNEII EASKWSPE AAACE+   D  FS    +  R + + T +G
Subjt:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACELSSWDNQFSHYYLKSGRILPLQTKEG
RYR79961.1 hypothetical protein Ahy_A01g004755 [Arachis hypogaea]1.5e-3173.47Show/hide
Query:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACELSSWDNQFSHYYLKSGRILPLQTK
        M ALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLA EGNEII EASKWSPE AAACE+    N  S  ++    ++ ++++
Subjt:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACELSSWDNQFSHYYLKSGRILPLQTK
XP_042412604.1 ribulose bisphosphate carboxylase large chain [Zingiber officinale]4.0e-3294.67Show/hide
Query:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACEL
        M ALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEII EASKWSPE AAACE+
Subjt:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACEL
TrEMBL top hitse value%identityAlignment
A0A445EX07 Ribulose bisphosphate carboxylase large chain7.4e-3273.47Show/hide
Query:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACELSSWDNQFSHYYLKSGRILPLQTK
        M ALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLA EGNEII EASKWSPE AAACE+    N  S  ++    ++ ++++
Subjt:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACELSSWDNQFSHYYLKSGRILPLQTK
O03058 Ribulose bisphosphate carboxylase large chain (Fragment)7.4e-3292.11Show/hide
Query:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACELS
        M ALTEIFGDDSVLQFGGGTLGHPWGNAPGA+ANRVALEACVQARNEGRDLAHEGN II EASKWSPE AAACE S
Subjt:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACELS
O98536 Ribulose bisphosphate carboxylase large chain (Fragment)7.4e-3294.67Show/hide
Query:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACEL
        M ALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLA EGNEII EASKWSPE AAACEL
Subjt:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACEL
Q8WLL6 Ribulose bisphosphate carboxylase large chain (Fragment)7.4e-3294.67Show/hide
Query:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACEL
        M ALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLA EGNEII EASKWSPE AAACEL
Subjt:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACEL
Q9XPK1 Ribulose bisphosphate carboxylase large chain (Fragment)1.9e-3294.67Show/hide
Query:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACEL
        M ALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEII EASKWSPE AAACE+
Subjt:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACEL
SwissProt top hitse value%identityAlignment
P28397 Ribulose bisphosphate carboxylase large chain (Fragment)3.4e-3493.33Show/hide
Query:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACEL
        M ALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLA EGNEII EASKWSPE AAACE+
Subjt:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACEL
P36476 Ribulose bisphosphate carboxylase large chain3.4e-3493.33Show/hide
Query:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACEL
        M ALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLA EGNEII EASKWSPE AAACE+
Subjt:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACEL
Q31795 Ribulose bisphosphate carboxylase large chain2.6e-3493.33Show/hide
Query:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACEL
        MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLA EGN+II EASKWSPE AAACE+
Subjt:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACEL
Q32041 Ribulose bisphosphate carboxylase large chain (Fragment)3.4e-3493.33Show/hide
Query:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACEL
        M ALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLA EGNEII EASKWSPE AAACE+
Subjt:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACEL
Q8MD78 Ribulose bisphosphate carboxylase large chain (Fragment)3.4e-3493.33Show/hide
Query:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACEL
        M ALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLA EGNEII EASKWSPE AAACE+
Subjt:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACEL
Arabidopsis top hitse value%identityAlignment
ATCG00190.1 RNA polymerase subunit beta1.5e-0839Show/hide
Query:  RDLAHEGNEIISEASKWSPEQAAACELSSWDNQFSHYYLKSGRILPLQTKEGTLLFDPT--PPSKLSGALRLLVGELRSLAFELNHFLVSKKNFKINRKE
        R  + +G + + E   W+ E      +            KS  I   Q   GT +   T   P     + RLLV ELRSLA ELNHFLVS+KNF+INRKE
Subjt:  RDLAHEGNEIISEASKWSPEQAAACELSSWDNQFSHYYLKSGRILPLQTKEGTLLFDPT--PPSKLSGALRLLVGELRSLAFELNHFLVSKKNFKINRKE
ATCG00490.1 ribulose-bisphosphate carboxylases2.7e-3492Show/hide
Query:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACEL
        M ALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLA EGNEII EA KWSPE AAACE+
Subjt:  MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACEL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGCTCTAACCGAGATTTTTGGAGATGATTCTGTACTACAATTCGGTGGAGGAACTTTGGGGCACCCTTGGGGTAATGCACCTGGTGCCGTAGCTAACCGAGTAGC
TCTAGAAGCATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCATGAGGGTAATGAAATTATCAGTGAGGCTAGTAAATGGAGTCCTGAACAAGCTGCTGCTTGTG
AACTTTCTTCTTGGGACAATCAGTTTAGCCATTACTATCTCAAGTCCGGTAGGATTCTTCCTCTTCAAACAAAGGAAGGAACTCTTCTTTTTGATCCAACTCCCCCTTCA
AAATTGTCTGGAGCCCTTCGATTGCTCGTTGGAGAATTACGATCTTTGGCTTTTGAACTGAATCATTTCCTTGTATCTAAGAAGAACTTCAAGATTAATAGGAAGGAAGC
TTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGCTCTAACCGAGATTTTTGGAGATGATTCTGTACTACAATTCGGTGGAGGAACTTTGGGGCACCCTTGGGGTAATGCACCTGGTGCCGTAGCTAACCGAGTAGC
TCTAGAAGCATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCATGAGGGTAATGAAATTATCAGTGAGGCTAGTAAATGGAGTCCTGAACAAGCTGCTGCTTGTG
AACTTTCTTCTTGGGACAATCAGTTTAGCCATTACTATCTCAAGTCCGGTAGGATTCTTCCTCTTCAAACAAAGGAAGGAACTCTTCTTTTTGATCCAACTCCCCCTTCA
AAATTGTCTGGAGCCCTTCGATTGCTCGTTGGAGAATTACGATCTTTGGCTTTTGAACTGAATCATTTCCTTGTATCTAAGAAGAACTTCAAGATTAATAGGAAGGAAGC
TTAA
Protein sequenceShow/hide protein sequence
MSALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAHEGNEIISEASKWSPEQAAACELSSWDNQFSHYYLKSGRILPLQTKEGTLLFDPTPPS
KLSGALRLLVGELRSLAFELNHFLVSKKNFKINRKEA