; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0038854 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038854
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description40S ribosomal protein S13
Genome locationchr2:29245183..29254773
RNA-Seq ExpressionLag0038854
SyntenyLag0038854
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR000589 - Ribosomal protein S15
IPR009068 - S15/NS1, RNA-binding
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3675381.1 40S ribosomal protein S13 [Capsicum annuum]1.7e-2288.71Show/hide
Query:  RLTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK
        RL PE+ +DLYHLIKKVV+IRKHLERNRKDKDSKFRLILVE+RIHCL RYYKKTKKLPPVWK
Subjt:  RLTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK

PHU14948.1 40S ribosomal protein S13 [Capsicum chinense]4.9e-2287.1Show/hide
Query:  RLTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK
        R  PE+ +DLYHLIKKVV+IRKHLERNRKDKDSKFRLILVE+RIHCL RYYKKTKKLPPVWK
Subjt:  RLTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK

PPD86677.1 hypothetical protein GOBAR_DD16380 [Gossypium barbadense]8.3e-2288.52Show/hide
Query:  LTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK
        L PE+ +DLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIHCL RYYKKTKKLPPVWK
Subjt:  LTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK

TQD76252.1 hypothetical protein C1H46_038200 [Malus baccata]1.1e-2167.82Show/hide
Query:  KDTPVFSNWDTALGGEVLDDAVAFSRLTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK
        +D+   +   T  G ++L    A+  L PE+ +DLYHLIKK VSIRKHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  KDTPVFSNWDTALGGEVLDDAVAFSRLTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK

XP_008376455.1 40S ribosomal protein S13-like [Malus domestica]1.1e-2167.82Show/hide
Query:  KDTPVFSNWDTALGGEVLDDAVAFSRLTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK
        +D+   +   T  G ++L    A+  L PE+ +DLYHLIKK VSIRKHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  KDTPVFSNWDTALGGEVLDDAVAFSRLTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK

TrEMBL top hitse value%identityAlignment
A0A2G3C894 30S ribosomal protein S15, chloroplastic2.4e-2287.1Show/hide
Query:  RLTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK
        R  PE+ +DLYHLIKKVV+IRKHLERNRKDKDSKFRLILVE+RIHCL RYYKKTKKLPPVWK
Subjt:  RLTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK

A0A2I4GVY9 40S ribosomal protein S139.0e-2267.82Show/hide
Query:  KDTPVFSNWDTALGGEVLDDAVAFSRLTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK
        +D+   +   T  G ++L    A   L PE+ +DLYHLIKK VSIRKHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  KDTPVFSNWDTALGGEVLDDAVAFSRLTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK

A0A498JJ56 Ribosomal_S13_N domain-containing protein5.3e-2267.82Show/hide
Query:  KDTPVFSNWDTALGGEVLDDAVAFSRLTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK
        +D+   +   T  G ++L    A+  L PE+ +DLYHLIKK VSIRKHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  KDTPVFSNWDTALGGEVLDDAVAFSRLTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK

A0A540KQH1 Ribosomal_S13_N domain-containing protein5.3e-2267.82Show/hide
Query:  KDTPVFSNWDTALGGEVLDDAVAFSRLTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK
        +D+   +   T  G ++L    A+  L PE+ +DLYHLIKK VSIRKHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  KDTPVFSNWDTALGGEVLDDAVAFSRLTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK

A0A6A3A0K1 40S ribosomal protein S131.2e-2166.67Show/hide
Query:  KDTPVFSNWDTALGGEVLDDAVAFSRLTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK
        +D+   +   +  GG++L    A   L PE+ +DLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  KDTPVFSNWDTALGGEVLDDAVAFSRLTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK

SwissProt top hitse value%identityAlignment
P46298 40S ribosomal protein S131.3e-2286.89Show/hide
Query:  LTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK
        L PE+ +DLYHLIKK VSIRKHLER RKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  LTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK

P59223 40S ribosomal protein S13-12.7e-2386.89Show/hide
Query:  LTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK
        L PE+ +DLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  LTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK

P59224 40S ribosomal protein S13-22.7e-2386.89Show/hide
Query:  LTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK
        L PE+ +DLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  LTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK

P62302 40S ribosomal protein S131.2e-2388.52Show/hide
Query:  LTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK
        L PE+ +DLYHLIKK VSIRKHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  LTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK

Q69UI2 40S ribosomal protein S13-11.9e-2181.97Show/hide
Query:  LTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK
        L PE+ +DLY LIKK V+IRKHLERNRKDKDSKFRLILVESRIH L RYYK+TKKLPP WK
Subjt:  LTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S151.9e-2486.89Show/hide
Query:  LTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK
        L PE+ +DLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  LTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK

AT4G00100.1 ribosomal protein S13A1.9e-2486.89Show/hide
Query:  LTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK
        L PE+ +DLYHLIKK V+IRKHLERNRKDKDSKFRLILVESRIH L RYYKKTKKLPPVWK
Subjt:  LTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGACTACCTGTTCTTGCGCCGGATGCTGCTACCGAAAGATGGTAAGGAATGGAATGATGAAAGGCCGGTTAGTGATATCGAGATATCGATAAGGGCTTGCTTGCC
TTTAGGTAAGGGAATAGTCCAACTCTCGACCCTATTGGGCTGCTCCCATTTCGCTCGCCGCTACTACGGGAATCGCTTTTGCTTTCTTTTCCTCTGGCTACTAAGATGTT
TCAGTTCGCCAGGTTGTCTCTTGCCTGCCCATGGATTCAGCAGCAGTTTGAAAGCATCACGGTTGTTACAGTCGGCGCTCTGCGTTCATGATACTGGGGTGTGCTTCCTT
GATATTAAGGATAGTAGAAAGGTTGTTCCCTTAAGTGCTAACTCCTGGACGTGGACAAAGGCGCGCCGCCCTCTCATTGGCCCGAGAGGTTTCAGGTTTAGTGGTGGGAC
CACAAACCAATTATTCCTTAGGGACTCAGTTGAGGCTGAAGGAACAAGAAGTGCTATAGGGGTGGACAGAAATATATCTACAGTGAGGGGAGTTCAGCTACGGGCTATAG
TGGAGTGTCGCGCTGTAATCGATCGAGGAAGACGAAGTGTTCAAGCTGCCGAAAAACAGAGCACCAGAAAATGCAACAGTGTCGAGACGCTACCGCCAAAATTCAAAAGG
TTTGAATTTTGGCGGTGGTTCGGTTCAGGGGTTCAAAATCTGGTCCGGTTCACCACTAATTGGACCGGTTCGGTCTGTACAAGCTGCTTCAAGCCCAATTTCAAGTCCTT
TGGCCCGGTTCAAGCGTTTTATGGAAGGTTCGAGCTGGTTCAAGATTATGCTGCTGAGCGACTGGAAGGAGCAAATTCTATGCTTCAGCAAAACTGGGAACAGAAGCTGC
CACATCACAGCTCGTTAGCCAACTTCATGAACCGACTTCTGTTGAGTTATTTTCGTGATAAAGGATCAAGGAGAGCCTTACACCAACGATTACTCCTTGGTTTTGCTGGA
AAATTGTACGAACACCACCACAAGGATACACCGGTATTCTCCAATTGGGATACTGCGTTAGGTGGTGAAGTTCTTGATGATGCAGTTGCCTTCTCAAGGCTAACTCCTGA
AGTCTCAAAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAGAAAGCATCTGGAGAGAAATAGGAAAGACAAGGATTCCAAGTTCAGGTTGATTTTGGTGGAGA
GCAGGATCCATTGCCTAGTCCGGTATTACAAGAAGACAAAGAAGCTTCCCCCTGTTTGGAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGACTACCTGTTCTTGCGCCGGATGCTGCTACCGAAAGATGGTAAGGAATGGAATGATGAAAGGCCGGTTAGTGATATCGAGATATCGATAAGGGCTTGCTTGCC
TTTAGGTAAGGGAATAGTCCAACTCTCGACCCTATTGGGCTGCTCCCATTTCGCTCGCCGCTACTACGGGAATCGCTTTTGCTTTCTTTTCCTCTGGCTACTAAGATGTT
TCAGTTCGCCAGGTTGTCTCTTGCCTGCCCATGGATTCAGCAGCAGTTTGAAAGCATCACGGTTGTTACAGTCGGCGCTCTGCGTTCATGATACTGGGGTGTGCTTCCTT
GATATTAAGGATAGTAGAAAGGTTGTTCCCTTAAGTGCTAACTCCTGGACGTGGACAAAGGCGCGCCGCCCTCTCATTGGCCCGAGAGGTTTCAGGTTTAGTGGTGGGAC
CACAAACCAATTATTCCTTAGGGACTCAGTTGAGGCTGAAGGAACAAGAAGTGCTATAGGGGTGGACAGAAATATATCTACAGTGAGGGGAGTTCAGCTACGGGCTATAG
TGGAGTGTCGCGCTGTAATCGATCGAGGAAGACGAAGTGTTCAAGCTGCCGAAAAACAGAGCACCAGAAAATGCAACAGTGTCGAGACGCTACCGCCAAAATTCAAAAGG
TTTGAATTTTGGCGGTGGTTCGGTTCAGGGGTTCAAAATCTGGTCCGGTTCACCACTAATTGGACCGGTTCGGTCTGTACAAGCTGCTTCAAGCCCAATTTCAAGTCCTT
TGGCCCGGTTCAAGCGTTTTATGGAAGGTTCGAGCTGGTTCAAGATTATGCTGCTGAGCGACTGGAAGGAGCAAATTCTATGCTTCAGCAAAACTGGGAACAGAAGCTGC
CACATCACAGCTCGTTAGCCAACTTCATGAACCGACTTCTGTTGAGTTATTTTCGTGATAAAGGATCAAGGAGAGCCTTACACCAACGATTACTCCTTGGTTTTGCTGGA
AAATTGTACGAACACCACCACAAGGATACACCGGTATTCTCCAATTGGGATACTGCGTTAGGTGGTGAAGTTCTTGATGATGCAGTTGCCTTCTCAAGGCTAACTCCTGA
AGTCTCAAAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAGAAAGCATCTGGAGAGAAATAGGAAAGACAAGGATTCCAAGTTCAGGTTGATTTTGGTGGAGA
GCAGGATCCATTGCCTAGTCCGGTATTACAAGAAGACAAAGAAGCTTCCCCCTGTTTGGAAGTAG
Protein sequenceShow/hide protein sequence
MADYLFLRRMLLPKDGKEWNDERPVSDIEISIRACLPLGKGIVQLSTLLGCSHFARRYYGNRFCFLFLWLLRCFSSPGCLLPAHGFSSSLKASRLLQSALCVHDTGVCFL
DIKDSRKVVPLSANSWTWTKARRPLIGPRGFRFSGGTTNQLFLRDSVEAEGTRSAIGVDRNISTVRGVQLRAIVECRAVIDRGRRSVQAAEKQSTRKCNSVETLPPKFKR
FEFWRWFGSGVQNLVRFTTNWTGSVCTSCFKPNFKSFGPVQAFYGRFELVQDYAAERLEGANSMLQQNWEQKLPHHSSLANFMNRLLLSYFRDKGSRRALHQRLLLGFAG
KLYEHHHKDTPVFSNWDTALGGEVLDDAVAFSRLTPEVSKDLYHLIKKVVSIRKHLERNRKDKDSKFRLILVESRIHCLVRYYKKTKKLPPVWK