; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0038929 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038929
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr2:31082982..31088320
RNA-Seq ExpressionLag0038929
SyntenyLag0038929
Gene Ontology termsNA
InterPro domainsIPR025476 - Helitron helicase-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045109.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.1e-3645.24Show/hide
Query:  VTSLITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPM-------------------------------------
        +  LI  LN  F LKDLG LSYFLG+EVSYP +GG+FLSQ KYI DLLQ+T M +AK ISTPM                                     
Subjt:  VTSLITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPM-------------------------------------

Query:  -----------------------------------------TNNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLA
                                                 + N SL G+ADADWASD DDRK TSG+CV+FG NL++WGSKKQSII RSSTEAEYRCLA
Subjt:  -----------------------------------------TNNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLA

Query:  LVATELIGIS
        L+ATEL+ I+
Subjt:  LVATELIGIS

KAA0052371.1 putative mitochondrial protein [Cucumis melo var. makuwa]4.2e-3746.41Show/hide
Query:  VTSLITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPM-------------------------------------
        V SL+  LN +F LKDLG LSYFLG+EVSYP +G LFLSQ KYI DLLQRT M +AK ISTPM                                     
Subjt:  VTSLITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPM-------------------------------------

Query:  -----------------------------------------TNNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLA
                                                 ++N SL G+ADADWASD DDRK TSG CV+FG NL++WGSKKQSIISRSSTEAEYRCLA
Subjt:  -----------------------------------------TNNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLA

Query:  LVATELIGI
        L+ATE++ I
Subjt:  LVATELIGI

XP_016901594.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]9.7e-3450.56Show/hide
Query:  LITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPM----------------------------------------
        LI  LN  F LKDLG LSYFL +EV YP +GG+FLSQ KYI +LLQ+T M EAK ISTPM                                        
Subjt:  LITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPM----------------------------------------

Query:  ----------TNNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLALVATELIGI
                  + N S+ G+ADADWASD DDRK TSG+CV+FG NL++ GSKKQSIISRSSTEA+Y CLAL ATEL+ I
Subjt:  ----------TNNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLALVATELIGI

XP_016902754.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]8.2e-4154.7Show/hide
Query:  VTSLITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPM-------------------------------------
        V SL+  LN +F LKDLG LSYFLG+EVSYP +GGLFLSQ KYI DLLQRT M EAK ISTPM                                     
Subjt:  VTSLITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPM-------------------------------------

Query:  -------------TNNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLALVATELIGI
                     ++N SL G+ADADWASD DDRK TSGF V+FG NL++WGSKK SIISRSSTEAEYRCLAL+ATEL+ I
Subjt:  -------------TNNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLALVATELIGI

XP_016903397.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]3.9e-3544.98Show/hide
Query:  VTSLITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPM-------------------------------------
        V SL+  LN +F LKDLG LSYFL +EVSYP +GGLFLSQ KYI DLLQRT M +AK IST M                                     
Subjt:  VTSLITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPM-------------------------------------

Query:  -----------------------------------------TNNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLA
                                                 ++N SL G+ DADWASD DDRK TSGFCV+FG NL++WGSKKQSII RSST+AEYRCL 
Subjt:  -----------------------------------------TNNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLA

Query:  LVATELIGI
        L+ATEL+ I
Subjt:  LVATELIGI

TrEMBL top hitse value%identityAlignment
A0A1S4E057 uncharacterized mitochondrial protein AtMg00810-like4.7e-3450.56Show/hide
Query:  LITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPM----------------------------------------
        LI  LN  F LKDLG LSYFL +EV YP +GG+FLSQ KYI +LLQ+T M EAK ISTPM                                        
Subjt:  LITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPM----------------------------------------

Query:  ----------TNNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLALVATELIGI
                  + N S+ G+ADADWASD DDRK TSG+CV+FG NL++ GSKKQSIISRSSTEA+Y CLAL ATEL+ I
Subjt:  ----------TNNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLALVATELIGI

A0A1S4E3F1 uncharacterized mitochondrial protein AtMg00810-like4.0e-4154.7Show/hide
Query:  VTSLITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPM-------------------------------------
        V SL+  LN +F LKDLG LSYFLG+EVSYP +GGLFLSQ KYI DLLQRT M EAK ISTPM                                     
Subjt:  VTSLITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPM-------------------------------------

Query:  -------------TNNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLALVATELIGI
                     ++N SL G+ADADWASD DDRK TSGF V+FG NL++WGSKK SIISRSSTEAEYRCLAL+ATEL+ I
Subjt:  -------------TNNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLALVATELIGI

A0A1S4E598 uncharacterized mitochondrial protein AtMg00810-like1.9e-3544.98Show/hide
Query:  VTSLITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPM-------------------------------------
        V SL+  LN +F LKDLG LSYFL +EVSYP +GGLFLSQ KYI DLLQRT M +AK IST M                                     
Subjt:  VTSLITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPM-------------------------------------

Query:  -----------------------------------------TNNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLA
                                                 ++N SL G+ DADWASD DDRK TSGFCV+FG NL++WGSKKQSII RSST+AEYRCL 
Subjt:  -----------------------------------------TNNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLA

Query:  LVATELIGI
        L+ATEL+ I
Subjt:  LVATELIGI

A0A5A7UFS3 Putative mitochondrial protein2.0e-3746.41Show/hide
Query:  VTSLITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPM-------------------------------------
        V SL+  LN +F LKDLG LSYFLG+EVSYP +G LFLSQ KYI DLLQRT M +AK ISTPM                                     
Subjt:  VTSLITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPM-------------------------------------

Query:  -----------------------------------------TNNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLA
                                                 ++N SL G+ADADWASD DDRK TSG CV+FG NL++WGSKKQSIISRSSTEAEYRCLA
Subjt:  -----------------------------------------TNNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLA

Query:  LVATELIGI
        L+ATE++ I
Subjt:  LVATELIGI

A0A5D3DK36 Putative mitochondrial protein1.0e-3645.24Show/hide
Query:  VTSLITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPM-------------------------------------
        +  LI  LN  F LKDLG LSYFLG+EVSYP +GG+FLSQ KYI DLLQ+T M +AK ISTPM                                     
Subjt:  VTSLITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPM-------------------------------------

Query:  -----------------------------------------TNNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLA
                                                 + N SL G+ADADWASD DDRK TSG+CV+FG NL++WGSKKQSII RSSTEAEYRCLA
Subjt:  -----------------------------------------TNNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLA

Query:  LVATELIGIS
        L+ATEL+ I+
Subjt:  LVATELIGIS

SwissProt top hitse value%identityAlignment
P0CV72 Secreted RxLR effector protein 1611.5e-0842.19Show/hide
Query:  LYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLALVATELIGIS
        L GY+DADWA D++ R+ TSG+     G  ++W SKKQ  ++ SSTE EY  L+    E + ++
Subjt:  LYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLALVATELIGIS

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.5e-1025.7Show/hide
Query:  VTSLITELNGRFYLKDLGPLSYFLGIE-VSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPMTNNFS-------------------------------
        +  L  +L+  F +KDLGP    LG++ V    S  L+LSQEKYI  +L+R +M  AK +STP+  +                                 
Subjt:  VTSLITELNGRFYLKDLGPLSYFLGIE-VSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPMTNNFS-------------------------------

Query:  -----------------------------------------------------LYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTE
                                                             L GY DAD A D+D+RK ++G+   F G  I+W SK Q  ++ S+TE
Subjt:  -----------------------------------------------------LYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTE

Query:  AEYRCLALVATELI
        AEY        E+I
Subjt:  AEYRCLALVATELI

P92519 Uncharacterized mitochondrial protein AtMg008104.1e-1930.29Show/hide
Query:  LITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPM----------------------------------------
        LI +L+  F +KDLGP+ YFLGI++   PS GLFLSQ KY   +L    M + K +STP+                                        
Subjt:  LITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPM----------------------------------------

Query:  -------------------------------------TNNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLALVAT
                                              +  ++  + D+DWA     R+ T+GFC F G N+I+W +K+Q  +SRSSTE EYR LAL A 
Subjt:  -------------------------------------TNNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLALVAT

Query:  ELIGISGS
        EL   S S
Subjt:  ELIGISGS

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE14.5e-1831.68Show/hide
Query:  ITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPMT----------------------------------------
        +  L+ RF +KD   L YFLGIE    P+ GL LSQ +YI+DLL RT+M  AK ++TPM                                         
Subjt:  ITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPMT----------------------------------------

Query:  --------------------------------------NNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLALVAT
                                              N  SL+ Y+DADWA D DD   T+G+ V+ G + I+W SKKQ  + RSSTEAEYR +A  ++
Subjt:  --------------------------------------NNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLALVAT

Query:  EL
        E+
Subjt:  EL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.8e-1731.66Show/hide
Query:  LNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPMT-------------------------------------------
        L+ RF +K+   L YFLGIE    P  GL LSQ +Y +DLL RT+M  AK ++TPM                                            
Subjt:  LNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPMT-------------------------------------------

Query:  -----------------------------------NNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLALVATEL
                                           N  SL+ Y+DADWA D DD   T+G+ V+ G + I+W SKKQ  + RSSTEAEYR +A  ++EL
Subjt:  -----------------------------------NNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLALVATEL

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 84.3e-1627.36Show/hide
Query:  AAVTSLITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPM-----------------------------------
        AAV  L ++L   F L+DLGPL YFLG+E++   + G+ + Q KY +DLL  T +   K  S PM                                   
Subjt:  AAVTSLITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPM-----------------------------------

Query:  -----TNNFSLYG--------------------------------------YADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRC
              N  S +                                       ++DA + S  D R+ T+G+C+F G +LI+W SKKQ ++S+SS EAEYR 
Subjt:  -----TNNFSLYG--------------------------------------YADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRC

Query:  LALVATELIGIS
        L+    E++ ++
Subjt:  LALVATELIGIS

ATMG00810.1 DNA/RNA polymerases superfamily protein2.9e-2030.29Show/hide
Query:  LITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPM----------------------------------------
        LI +L+  F +KDLGP+ YFLGI++   PS GLFLSQ KY   +L    M + K +STP+                                        
Subjt:  LITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPM----------------------------------------

Query:  -------------------------------------TNNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLALVAT
                                              +  ++  + D+DWA     R+ T+GFC F G N+I+W +K+Q  +SRSSTE EYR LAL A 
Subjt:  -------------------------------------TNNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQSIISRSSTEAEYRCLALVAT

Query:  ELIGISGS
        EL   S S
Subjt:  ELIGISGS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCTGTTACATCTCTCATTACTGAGTTGAATGGTCGGTTTTATCTTAAAGATTTGGGTCCTCTTAGTTATTTTCTGGGAATTGAGGTGTCCTACCCACCATCAGG
TGGCCTATTTCTCTCCCAAGAAAAATATATCATGGATCTTTTGCAGCGTACTCATATGGCAGAGGCTAAAGCTATATCAACTCCTATGACTAATAATTTTTCTTTATATG
GCTATGCTGATGCGGATTGGGCATCAGACCTGGATGATCGAAAATTAACGTCAGGTTTTTGTGTTTTCTTTGGAGGCAATTTGATCACCTGGGGATCTAAGAAGCAGTCT
ATTATTTCTCGGTCTAGTACAGAGGCCGAGTATCGTTGTCTTGCCTTAGTCGCCACTGAGTTGATTGGGATATCGGGTTCAATTGCATATGGGAGAATCATCAATTTGCA
CATCATCGGCACCGGAGGATTCTACCTAACACGGCTACGCCCGGGGCATGACTCTGATACCACTTGTAGGGACTATCGAACACACACATATCTCCACAATGGTATGATAT
TGTCCACTTTGGGTATAAGCCCTCATGGCTTTGTTTTTGGATCACCCCAAAAGGCCTCATACCAATGGAGATACTTGTCCTCCCTTTTAGTTGTTTCAAATGGAGAGATT
GAAGCTAATGTTACAACATTTGAGGCTGCTGAAAGGTTGACAAAATGTGGTGTTTCTCGATATGCAAAGGAGATTTCAAGAGATATGCGGAAAAGATATCTTGATGCAAT
GGCTTTGGTCCAACGATTTGGAAAACCAGATCTTTTCATCATAATGACATGTAATCCAGATTTGAAGGAGATAAAAGACAACCTTAAAGAATGCCAGCAGTCTCAAGATA
GACCTGATTTGACATCACGAGTTTTCAGAGCTAAGTTACAAGATCTCAAACACCAATTGTTTAAGAAAGAAATATTTGGAAAAGTGGCAGCATTTGTTTATGTGATTGAA
TTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCTGTTACATCTCTCATTACTGAGTTGAATGGTCGGTTTTATCTTAAAGATTTGGGTCCTCTTAGTTATTTTCTGGGAATTGAGGTGTCCTACCCACCATCAGG
TGGCCTATTTCTCTCCCAAGAAAAATATATCATGGATCTTTTGCAGCGTACTCATATGGCAGAGGCTAAAGCTATATCAACTCCTATGACTAATAATTTTTCTTTATATG
GCTATGCTGATGCGGATTGGGCATCAGACCTGGATGATCGAAAATTAACGTCAGGTTTTTGTGTTTTCTTTGGAGGCAATTTGATCACCTGGGGATCTAAGAAGCAGTCT
ATTATTTCTCGGTCTAGTACAGAGGCCGAGTATCGTTGTCTTGCCTTAGTCGCCACTGAGTTGATTGGGATATCGGGTTCAATTGCATATGGGAGAATCATCAATTTGCA
CATCATCGGCACCGGAGGATTCTACCTAACACGGCTACGCCCGGGGCATGACTCTGATACCACTTGTAGGGACTATCGAACACACACATATCTCCACAATGGTATGATAT
TGTCCACTTTGGGTATAAGCCCTCATGGCTTTGTTTTTGGATCACCCCAAAAGGCCTCATACCAATGGAGATACTTGTCCTCCCTTTTAGTTGTTTCAAATGGAGAGATT
GAAGCTAATGTTACAACATTTGAGGCTGCTGAAAGGTTGACAAAATGTGGTGTTTCTCGATATGCAAAGGAGATTTCAAGAGATATGCGGAAAAGATATCTTGATGCAAT
GGCTTTGGTCCAACGATTTGGAAAACCAGATCTTTTCATCATAATGACATGTAATCCAGATTTGAAGGAGATAAAAGACAACCTTAAAGAATGCCAGCAGTCTCAAGATA
GACCTGATTTGACATCACGAGTTTTCAGAGCTAAGTTACAAGATCTCAAACACCAATTGTTTAAGAAAGAAATATTTGGAAAAGTGGCAGCATTTGTTTATGTGATTGAA
TTTTAG
Protein sequenceShow/hide protein sequence
MAAVTSLITELNGRFYLKDLGPLSYFLGIEVSYPPSGGLFLSQEKYIMDLLQRTHMAEAKAISTPMTNNFSLYGYADADWASDLDDRKLTSGFCVFFGGNLITWGSKKQS
IISRSSTEAEYRCLALVATELIGISGSIAYGRIINLHIIGTGGFYLTRLRPGHDSDTTCRDYRTHTYLHNGMILSTLGISPHGFVFGSPQKASYQWRYLSSLLVVSNGEI
EANVTTFEAAERLTKCGVSRYAKEISRDMRKRYLDAMALVQRFGKPDLFIIMTCNPDLKEIKDNLKECQQSQDRPDLTSRVFRAKLQDLKHQLFKKEIFGKVAAFVYVIE
F