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Lag0038949 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038949
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr2:31570155..31573306
RNA-Seq ExpressionLag0038949
SyntenyLag0038949
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEE54019.1 hypothetical protein OsJ_00679 [Oryza sativa Japonica Group]4.4e-0532.97Show/hide
Query:  RNLKDDEAMEWAELTFILALIALTQRADSWIWIPKLNGSFSIKMFLSGMVDPTCLLEPSLARAIWEDKYPKKIKLFLWELSHRAMNTKDPL
        R++   + +EW +L   LA I L+   D +IW    NG FS+K   + +++   ++     R +W+ K P KIK+F+W L  + + TKD L
Subjt:  RNLKDDEAMEWAELTFILALIALTQRADSWIWIPKLNGSFSIKMFLSGMVDPTCLLEPSLARAIWEDKYPKKIKLFLWELSHRAMNTKDPL

KAA0037436.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.5e-0534.91Show/hide
Query:  RNLKDDEAMEWAELTFILALIALTQRADSWIWIPKLNGSFSI----KMFLSGMVDPTCLLEPSLARAIWEDKYPKKIKLFLWELSHRAMNTKDPLQRLLE
        R L D E   W  L  IL ++ L    ++ IW P   G+++     +  LS    P  L E +    +W+ K PKK K F+W L H ++NT D LQ+ L 
Subjt:  RNLKDDEAMEWAELTFILALIALTQRADSWIWIPKLNGSFSI----KMFLSGMVDPTCLLEPSLARAIWEDKYPKKIKLFLWELSHRAMNTKDPLQRLLE

Query:  KS-LQP
         + LQP
Subjt:  KS-LQP

MCH92386.1 putative non-LTR retroelement reverse transcriptase [Trifolium medium]3.4e-0533.62Show/hide
Query:  RNLKDDEAMEWAELTFILALIALTQRADSWIWIPKLNGSFSIK----MFLSGMVDPTCL--LEPSLARAIWEDKYPKKIKLFLWELSHRAMNTKDPLQRL
        RNL   E  E + L  +L  + L+   DSW W+    G FS+K    MF   MV+   L  LE S+ R IW+   P K+ +F W+L H    TKD    L
Subjt:  RNLKDDEAMEWAELTFILALIALTQRADSWIWIPKLNGSFSIK----MFLSGMVDPTCL--LEPSLARAIWEDKYPKKIKLFLWELSHRAMNTKDPLQRL

Query:  LEKSLQPHQSLATCLW
        + + +        C+W
Subjt:  LEKSLQPHQSLATCLW

MQM04716.1 hypothetical protein [Colocasia esculenta]6.8e-0627.69Show/hide
Query:  GASTLTQLGRNLKDDEAMEWAELTFILALIALT-QRADSWIWIPKLNGSFSIKMFLSGMVDPTCLLEPSLARAIWEDKYPKKIKLFLWELSHRAMNTKDP
        G + +    RN+  + A +  ++  ILA   LT  R D W W  + +G F +K     +VD    L       IW+ + P KIK+F+W +SH    T D 
Subjt:  GASTLTQLGRNLKDDEAMEWAELTFILALIALT-QRADSWIWIPKLNGSFSIKMFLSGMVDPTCLLEPSLARAIWEDKYPKKIKLFLWELSHRAMNTKDP

Query:  LQRLLEKSLQPHQSLATCLWSTLECHLGGNVKATSG----WNPVGKNCLENLPDSTCKMVDRITGNRWKLPSK----LWNQLLEAFGWQTLLHTN
        + R L      +   + CL    E +L   +   S     W+ +GK    N+P +  K  + + G   K PSK    +W  +L A  W   +  N
Subjt:  LQRLLEKSLQPHQSLATCLWSTLECHLGGNVKATSG----WNPVGKNCLENLPDSTCKMVDRITGNRWKLPSK----LWNQLLEAFGWQTLLHTN

TYK00226.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.5e-0534.91Show/hide
Query:  RNLKDDEAMEWAELTFILALIALTQRADSWIWIPKLNGSFSI----KMFLSGMVDPTCLLEPSLARAIWEDKYPKKIKLFLWELSHRAMNTKDPLQRLLE
        R L D E   W  L  IL ++ L    ++ IW P   G+++     +  LS    P  L E +    +W+ K PKK K F+W L H ++NT D LQ+ L 
Subjt:  RNLKDDEAMEWAELTFILALIALTQRADSWIWIPKLNGSFSI----KMFLSGMVDPTCLLEPSLARAIWEDKYPKKIKLFLWELSHRAMNTKDPLQRLLE

Query:  KS-LQP
         + LQP
Subjt:  KS-LQP

TrEMBL top hitse value%identityAlignment
A0A392MXV7 Putative non-LTR retroelement reverse transcriptase (Fragment)1.6e-0533.62Show/hide
Query:  RNLKDDEAMEWAELTFILALIALTQRADSWIWIPKLNGSFSIK----MFLSGMVDPTCL--LEPSLARAIWEDKYPKKIKLFLWELSHRAMNTKDPLQRL
        RNL   E  E + L  +L  + L+   DSW W+    G FS+K    MF   MV+   L  LE S+ R IW+   P K+ +F W+L H    TKD    L
Subjt:  RNLKDDEAMEWAELTFILALIALTQRADSWIWIPKLNGSFSIK----MFLSGMVDPTCL--LEPSLARAIWEDKYPKKIKLFLWELSHRAMNTKDPLQRL

Query:  LEKSLQPHQSLATCLW
        + + +        C+W
Subjt:  LEKSLQPHQSLATCLW

A0A5A7T5L3 LINE-1 retrotransposable element ORF2 protein7.3e-0634.91Show/hide
Query:  RNLKDDEAMEWAELTFILALIALTQRADSWIWIPKLNGSFSI----KMFLSGMVDPTCLLEPSLARAIWEDKYPKKIKLFLWELSHRAMNTKDPLQRLLE
        R L D E   W  L  IL ++ L    ++ IW P   G+++     +  LS    P  L E +    +W+ K PKK K F+W L H ++NT D LQ+ L 
Subjt:  RNLKDDEAMEWAELTFILALIALTQRADSWIWIPKLNGSFSI----KMFLSGMVDPTCLLEPSLARAIWEDKYPKKIKLFLWELSHRAMNTKDPLQRLLE

Query:  KS-LQP
         + LQP
Subjt:  KS-LQP

A0A5D3BPP1 LINE-1 retrotransposable element ORF2 protein7.3e-0634.91Show/hide
Query:  RNLKDDEAMEWAELTFILALIALTQRADSWIWIPKLNGSFSI----KMFLSGMVDPTCLLEPSLARAIWEDKYPKKIKLFLWELSHRAMNTKDPLQRLLE
        R L D E   W  L  IL ++ L    ++ IW P   G+++     +  LS    P  L E +    +W+ K PKK K F+W L H ++NT D LQ+ L 
Subjt:  RNLKDDEAMEWAELTFILALIALTQRADSWIWIPKLNGSFSI----KMFLSGMVDPTCLLEPSLARAIWEDKYPKKIKLFLWELSHRAMNTKDPLQRLLE

Query:  KS-LQP
         + LQP
Subjt:  KS-LQP

A0A5D3C104 LINE-1 retrotransposable element ORF2 protein6.2e-0534.23Show/hide
Query:  RNLKDDEAMEWAELTFILALIALTQRADSWIWIPKLNGSFSI---KMFLSGMVDPTCL-LEPSLARAIWEDKYPKKIKLFLWELSHRAMNTKDPL-QRLL
        R L D E  +WA++  IL      +R+    W P  N SFSI   K+ +S  +D +       L   IW+   P KIK F+W L  R +NT + + QR+ 
Subjt:  RNLKDDEAMEWAELTFILALIALTQRADSWIWIPKLNGSFSI---KMFLSGMVDPTCL-LEPSLARAIWEDKYPKKIKLFLWELSHRAMNTKDPL-QRLL

Query:  EKSLQPHQSLA
           LQP+ +L+
Subjt:  EKSLQPHQSLA

B9ETJ8 zf-RVT domain-containing protein2.1e-0532.97Show/hide
Query:  RNLKDDEAMEWAELTFILALIALTQRADSWIWIPKLNGSFSIKMFLSGMVDPTCLLEPSLARAIWEDKYPKKIKLFLWELSHRAMNTKDPL
        R++   + +EW +L   LA I L+   D +IW    NG FS+K   + +++   ++     R +W+ K P KIK+F+W L  + + TKD L
Subjt:  RNLKDDEAMEWAELTFILALIALTQRADSWIWIPKLNGSFSIKMFLSGMVDPTCLLEPSLARAIWEDKYPKKIKLFLWELSHRAMNTKDPL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGGGGATTTAAACAACTTCAGTCACCACCTTGTGAGTTGGGAAAGCATCCTCTTCCCATCCTCGAGCTTCACTCTATAAGAGGGATTAGAACAAAGTGCTTCTT
GCAAAAAGGACGCCAAGTTGGTGGTGGTGCCTCTACCTTGACTCAACTTGGCAGGAATTTGAAAGATGATGAGGCTATGGAATGGGCTGAGCTAACTTTTATCTTAGCAT
TGATTGCTCTAACACAAAGGGCTGATTCGTGGATCTGGATTCCTAAACTGAATGGTTCTTTTTCCATCAAAATGTTTTTATCTGGCATGGTTGACCCCACTTGTCTTTTG
GAGCCTTCCTTGGCCCGTGCCATATGGGAAGACAAATACCCCAAGAAGATCAAACTTTTTCTTTGGGAATTATCTCACAGGGCTATGAACACCAAGGATCCTCTACAGAG
GTTACTTGAGAAATCTCTTCAGCCTCATCAAAGTCTGGCTACCTGCCTATGGTCTACCTTGGAATGCCATCTTGGAGGTAACGTAAAGGCCACTTCTGGCTGGAATCCTG
TTGGGAAAAATTGCCTAGAAAATCTACCAGATTCCACTTGCAAAATGGTGGATAGAATCACTGGGAACAGATGGAAGCTGCCTTCGAAACTTTGGAATCAACTTCTTGAG
GCATTTGGATGGCAGACTCTTCTTCACACAAATGCTCTCTCCTTCATACCATCTCGATATCTTGATAGGCTACCTGTTCAGAAAAGAGAGGAATCCTCTGGATTCATCAG
GGCCTTCTTTGGTGCCTATGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGGGGGATTTAAACAACTTCAGTCACCACCTTGTGAGTTGGGAAAGCATCCTCTTCCCATCCTCGAGCTTCACTCTATAAGAGGGATTAGAACAAAGTGCTTCTT
GCAAAAAGGACGCCAAGTTGGTGGTGGTGCCTCTACCTTGACTCAACTTGGCAGGAATTTGAAAGATGATGAGGCTATGGAATGGGCTGAGCTAACTTTTATCTTAGCAT
TGATTGCTCTAACACAAAGGGCTGATTCGTGGATCTGGATTCCTAAACTGAATGGTTCTTTTTCCATCAAAATGTTTTTATCTGGCATGGTTGACCCCACTTGTCTTTTG
GAGCCTTCCTTGGCCCGTGCCATATGGGAAGACAAATACCCCAAGAAGATCAAACTTTTTCTTTGGGAATTATCTCACAGGGCTATGAACACCAAGGATCCTCTACAGAG
GTTACTTGAGAAATCTCTTCAGCCTCATCAAAGTCTGGCTACCTGCCTATGGTCTACCTTGGAATGCCATCTTGGAGGTAACGTAAAGGCCACTTCTGGCTGGAATCCTG
TTGGGAAAAATTGCCTAGAAAATCTACCAGATTCCACTTGCAAAATGGTGGATAGAATCACTGGGAACAGATGGAAGCTGCCTTCGAAACTTTGGAATCAACTTCTTGAG
GCATTTGGATGGCAGACTCTTCTTCACACAAATGCTCTCTCCTTCATACCATCTCGATATCTTGATAGGCTACCTGTTCAGAAAAGAGAGGAATCCTCTGGATTCATCAG
GGCCTTCTTTGGTGCCTATGGTTGA
Protein sequenceShow/hide protein sequence
MEGGFKQLQSPPCELGKHPLPILELHSIRGIRTKCFLQKGRQVGGGASTLTQLGRNLKDDEAMEWAELTFILALIALTQRADSWIWIPKLNGSFSIKMFLSGMVDPTCLL
EPSLARAIWEDKYPKKIKLFLWELSHRAMNTKDPLQRLLEKSLQPHQSLATCLWSTLECHLGGNVKATSGWNPVGKNCLENLPDSTCKMVDRITGNRWKLPSKLWNQLLE
AFGWQTLLHTNALSFIPSRYLDRLPVQKREESSGFIRAFFGAYG