CuGenDBv2

Gene ID	Lag0038972
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr2:32299014..32300531
RNA-Seq Expression	Lag0038972
Synteny	Lag0038972
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.8e-35

52.33

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Query:  PQMQAMLTSSDMNQDNNWYLDLGATNHLTNNFNNLAVSSDYNGGNQMQDGNDTSLSISHFGYSS-------NRFFHLKNLLHVPQKTKNLISVSQFAKDN
        PQM AM+ + D+N D+NWY D GATNHLT++ +NL++ S+Y GGNQ+   N + L I+H+G  S        + F L NLL VP  TKNLISVSQFAKDN
Subjt:  PQMQAMLTSSDMNQDNNWYLDLGATNHLTNNFNNLAVSSDYNGGNQMQDGNDTSLSISHFGYSS-------NRFFHLKNLLHVPQKTKNLISVSQFAKDN

Query:  SIFFEFDPDFCYVKDHLNGQILLQGPLREGLYKFNLSIHPSHPKSTLHTANTIAKPFANKCLMSQVVPSAYT
         +FFEF P  CYVKD   GQ+LLQG L +GLYKF  +I PSH +  LH +N+  KP  N      VVP + T
Subjt:  SIFFEFDPDFCYVKDHLNGQILLQGPLREGLYKFNLSIHPSHPKSTLHTANTIAKPFANKCLMSQVVPSAYT

KAA0068024.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

4.2e-31

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Query:  PQMQAMLTSSDMNQDNNWYLDLGATNHLTNNFNNLAVSSDYNGGNQMQDGNDTSLSISHFGYSS-------NRFFHLKNLLHVPQKTKNLISVSQFAKDN
        PQ Q + T    + D+NWY D GATNHLT++ +NL+  S+Y GGNQ+   N + L I+H+G  S        + F LKNLLHVP  TKNLISVS FAKDN
Subjt:  PQMQAMLTSSDMNQDNNWYLDLGATNHLTNNFNNLAVSSDYNGGNQMQDGNDTSLSISHFGYSS-------NRFFHLKNLLHVPQKTKNLISVSQFAKDN

Query:  SIFFEFDPDFCYVKDHLNGQILLQGPLREGLYKFNLSIHPSHPKSTLHTANTIAKPFANKCLMSQVVPSAYT
         +FFEF P  CYVKD  NGQ+LLQG L +GLYKF  +I PSH +      NT       K + + VVP + T
Subjt:  SIFFEFDPDFCYVKDHLNGQILLQGPLREGLYKFNLSIHPSHPKSTLHTANTIAKPFANKCLMSQVVPSAYT

TXG63472.1 hypothetical protein EZV62_010466 [Acer yangbiense]

4.8e-27

49.64

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Query:  SPTPQMQAMLTSSDMNQDNNWYLDLGATNHLTNNFNNLAVSSDYNGGNQMQDGNDTSLSISHFGYS----SNRFFHLKNLLHVPQKTKNLISVSQFAKDN
        +P  QM AM  + D   +  W+ DL ATNH+ N   NL + ++YNGGN++  GN   L+I H G+S    ++R F L+NLLHVP  TKNLISVSQFA DN
Subjt:  SPTPQMQAMLTSSDMNQDNNWYLDLGATNHLTNNFNNLAVSSDYNGGNQMQDGNDTSLSISHFGYS----SNRFFHLKNLLHVPQKTKNLISVSQFAKDN

Query:  SIFFEFDPDFCYVKDHLNGQILLQGPLREGLYKFNLS
        ++FFE  P  C+VKDH + + LL+G  +  LY+FNLS
Subjt:  SIFFEFDPDFCYVKDHLNGQILLQGPLREGLYKFNLS

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.8e-35

52.33

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Query:  PQMQAMLTSSDMNQDNNWYLDLGATNHLTNNFNNLAVSSDYNGGNQMQDGNDTSLSISHFGYSS-------NRFFHLKNLLHVPQKTKNLISVSQFAKDN
        PQM AM+ + D+N D+NWY D GATNHLT++ +NL++ S+Y GGNQ+   N + L I+H+G  S        + F L NLL VP  TKNLISVSQFAKDN
Subjt:  PQMQAMLTSSDMNQDNNWYLDLGATNHLTNNFNNLAVSSDYNGGNQMQDGNDTSLSISHFGYSS-------NRFFHLKNLLHVPQKTKNLISVSQFAKDN

Query:  SIFFEFDPDFCYVKDHLNGQILLQGPLREGLYKFNLSIHPSHPKSTLHTANTIAKPFANKCLMSQVVPSAYT
         +FFEF P  CYVKD   GQ+LLQG L +GLYKF  +I PSH +  LH +N+  KP  N      VVP + T
Subjt:  SIFFEFDPDFCYVKDHLNGQILLQGPLREGLYKFNLSIHPSHPKSTLHTANTIAKPFANKCLMSQVVPSAYT

XP_022156747.1 uncharacterized protein LOC111023586 [Momordica charantia]

1.4e-31

50.3

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Query:  FGVGAFSPTPQMQAMLTSSDMNQDNNWYLDLGATNHLTNNFNNLAVSSDYNGGNQMQDGNDTSLSISHFG----------YSSNRFFHLKNLLHVPQKTK
        FGV   S TPQMQAM+ ++D N+D  WY D GATNH+TN+F N ++ S Y+G  ++Q GN T+LSISH G           SS   FHL+NLLHVPQ  K
Subjt:  FGVGAFSPTPQMQAMLTSSDMNQDNNWYLDLGATNHLTNNFNNLAVSSDYNGGNQMQDGNDTSLSISHFG----------YSSNRFFHLKNLLHVPQKTK

Query:  NLISVSQFAKDNSIFFEFDPDFCYVKDHLNGQILLQGPLREGLYKFNL----SIHPSHPKSTLHTANTI
        NLIS+S FAKDN +FFEF P   +VKD   GQ+L QG + + LY+F L    S  P    ST + + TI
Subjt:  NLISVSQFAKDNSIFFEFDPDFCYVKDHLNGQILLQGPLREGLYKFNL----SIHPSHPKSTLHTANTI

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.4e-35

52.33

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Query:  PQMQAMLTSSDMNQDNNWYLDLGATNHLTNNFNNLAVSSDYNGGNQMQDGNDTSLSISHFGYSS-------NRFFHLKNLLHVPQKTKNLISVSQFAKDN
        PQM AM+ + D+N D+NWY D GATNHLT++ +NL++ S+Y GGNQ+   N + L I+H+G  S        + F L NLL VP  TKNLISVSQFAKDN
Subjt:  PQMQAMLTSSDMNQDNNWYLDLGATNHLTNNFNNLAVSSDYNGGNQMQDGNDTSLSISHFGYSS-------NRFFHLKNLLHVPQKTKNLISVSQFAKDN

Query:  SIFFEFDPDFCYVKDHLNGQILLQGPLREGLYKFNLSIHPSHPKSTLHTANTIAKPFANKCLMSQVVPSAYT
         +FFEF P  CYVKD   GQ+LLQG L +GLYKF  +I PSH +  LH +N+  KP  N      VVP + T
Subjt:  SIFFEFDPDFCYVKDHLNGQILLQGPLREGLYKFNLSIHPSHPKSTLHTANTIAKPFANKCLMSQVVPSAYT

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.4e-35

52.33

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Query:  PQMQAMLTSSDMNQDNNWYLDLGATNHLTNNFNNLAVSSDYNGGNQMQDGNDTSLSISHFGYSS-------NRFFHLKNLLHVPQKTKNLISVSQFAKDN
        PQM AM+ + D+N D+NWY D GATNHLT++ +NL++ S+Y GGNQ+   N + L I+H+G  S        + F L NLL VP  TKNLISVSQFAKDN
Subjt:  PQMQAMLTSSDMNQDNNWYLDLGATNHLTNNFNNLAVSSDYNGGNQMQDGNDTSLSISHFGYSS-------NRFFHLKNLLHVPQKTKNLISVSQFAKDN

Query:  SIFFEFDPDFCYVKDHLNGQILLQGPLREGLYKFNLSIHPSHPKSTLHTANTIAKPFANKCLMSQVVPSAYT
         +FFEF P  CYVKD   GQ+LLQG L +GLYKF  +I PSH +  LH +N+  KP  N      VVP + T
Subjt:  SIFFEFDPDFCYVKDHLNGQILLQGPLREGLYKFNLSIHPSHPKSTLHTANTIAKPFANKCLMSQVVPSAYT

A0A5D3D3G2 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.0e-31

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Query:  PQMQAMLTSSDMNQDNNWYLDLGATNHLTNNFNNLAVSSDYNGGNQMQDGNDTSLSISHFGYSS-------NRFFHLKNLLHVPQKTKNLISVSQFAKDN
        PQ Q + T    + D+NWY D GATNHLT++ +NL+  S+Y GGNQ+   N + L I+H+G  S        + F LKNLLHVP  TKNLISVS FAKDN
Subjt:  PQMQAMLTSSDMNQDNNWYLDLGATNHLTNNFNNLAVSSDYNGGNQMQDGNDTSLSISHFGYSS-------NRFFHLKNLLHVPQKTKNLISVSQFAKDN

Query:  SIFFEFDPDFCYVKDHLNGQILLQGPLREGLYKFNLSIHPSHPKSTLHTANTIAKPFANKCLMSQVVPSAYT
         +FFEF P  CYVKD  NGQ+LLQG L +GLYKF  +I PSH +      NT       K + + VVP + T
Subjt:  SIFFEFDPDFCYVKDHLNGQILLQGPLREGLYKFNLSIHPSHPKSTLHTANTIAKPFANKCLMSQVVPSAYT

A0A6J1DSS1 uncharacterized protein LOC111023586

7.0e-32

50.3

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Query:  FGVGAFSPTPQMQAMLTSSDMNQDNNWYLDLGATNHLTNNFNNLAVSSDYNGGNQMQDGNDTSLSISHFG----------YSSNRFFHLKNLLHVPQKTK
        FGV   S TPQMQAM+ ++D N+D  WY D GATNH+TN+F N ++ S Y+G  ++Q GN T+LSISH G           SS   FHL+NLLHVPQ  K
Subjt:  FGVGAFSPTPQMQAMLTSSDMNQDNNWYLDLGATNHLTNNFNNLAVSSDYNGGNQMQDGNDTSLSISHFG----------YSSNRFFHLKNLLHVPQKTK

Query:  NLISVSQFAKDNSIFFEFDPDFCYVKDHLNGQILLQGPLREGLYKFNL----SIHPSHPKSTLHTANTI
        NLIS+S FAKDN +FFEF P   +VKD   GQ+L QG + + LY+F L    S  P    ST + + TI
Subjt:  NLISVSQFAKDNSIFFEFDPDFCYVKDHLNGQILLQGPLREGLYKFNL----SIHPSHPKSTLHTANTI

A0A803NRU8 Uncharacterized protein

1.8e-27

48.7

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Query:  GVGAFSPTPQMQAMLTSSDMNQDNNWYLDLGATNHLTNNFNNLAVSSDYNGGNQMQDGNDTSLSISHFGYSS------NRFFHLKNLLHVPQKTKNLISV
        GV A + T  MQA LT +   +D NWY D GATNH T + +NL  +++YNG  Q+  GN T LSI ++G +       N+   LKNLLHVP+ TKNL+SV
Subjt:  GVGAFSPTPQMQAMLTSSDMNQDNNWYLDLGATNHLTNNFNNLAVSSDYNGGNQMQDGNDTSLSISHFGYSS------NRFFHLKNLLHVPQKTKNLISV

Query:  SQFAKDNSIFFEFDPDFCYVKDHLNGQILLQGPLREGLYKFNLSIHPSHPKSTL
        S+FA+DN++ FEF  D CYVKD +   ILL G L  GLY F+ +     P STL
Subjt:  SQFAKDNSIFFEFDPDFCYVKDHLNGQILLQGPLREGLYKFNLSIHPSHPKSTL

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

3.0e-16

38.35

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Query:  QMQAMLTSSDMNQDNNWYLDLGATNHLTNNFNNLAVSSDYNGGNQMQDGNDTSLSISHFGYSS----NRFFHLKNLLHVPQKTKNLISVSQFAKDNSIFF
        Q +A L        NNW LD GAT+H+T++FNNL++   Y GG+ +   + +++ ISH G +S    +R  +L N+L+VP   KNLISV +    N +  
Subjt:  QMQAMLTSSDMNQDNNWYLDLGATNHLTNNFNNLAVSSDYNGGNQMQDGNDTSLSISHFGYSS----NRFFHLKNLLHVPQKTKNLISVSQFAKDNSIFF

Query:  EFDPDFCYVKDHLNGQILLQGPLREGLYKFNLS
        EF P    VKD   G  LLQG  ++ LY++ ++
Subjt:  EFDPDFCYVKDHLNGQILLQGPLREGLYKFNLS

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

5.7e-15

36.11

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Query:  QFGVGAFSPTPQMQAMLTSSDMNQDNNWYLDLGATNHLTNNFNNLAVSSDYNGGNQMQDGNDTSLSISHFGY----SSNRFFHLKNLLHVPQKTKNLISV
        Q     F+P  Q +A L  +     NNW LD GAT+H+T++FNNL+    Y GG+ +   + +++ I+H G     +S+R   L  +L+VP   KNLISV
Subjt:  QFGVGAFSPTPQMQAMLTSSDMNQDNNWYLDLGATNHLTNNFNNLAVSSDYNGGNQMQDGNDTSLSISHFGY----SSNRFFHLKNLLHVPQKTKNLISV

Query:  SQFAKDNSIFFEFDPDFCYVKDHLNGQILLQGPLREGLYKFNLS
         +    N +  EF P    VKD   G  LLQG  ++ LY++ ++
Subjt:  SQFAKDNSIFFEFDPDFCYVKDHLNGQILLQGPLREGLYKFNLS

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGATTCCTCGACTCATACTGAAATTGAATCATCAGAAGGAACTGAGAATTCATCTACTTCTGTTATCAATCAAGGTAACAAGATCTCCACGGTGAAATTAGGAAATGA
TAATTTTCTAATGTGGAAGCACTCTATTAATCATGGAGGTTTTCATCCTCAGTTTGGTGTTGGTGCCTTTTCTCCTACTCCACAAATGCAAGCTATGCTCACATCCTCAG
ACATGAATCAAGATAACAATTGGTATCTTGATTTGGGTGCGACTAATCATCTAACAAATAACTTCAATAACCTTGCAGTCAGTTCTGATTATAATGGTGGTAATCAAATG
CAAGATGGAAATGATACAAGTCTGTCTATCTCTCATTTTGGTTATTCCTCTAATCGGTTTTTTCACCTTAAAAATCTACTTCATGTTCCTCAAAAAACCAAAAACCTCAT
TAGTGTTAGTCAATTTGCAAAAGACAACTCTATTTTCTTTGAATTTGACCCTGACTTTTGCTATGTGAAGGACCACCTTAATGGCCAAATACTACTCCAAGGACCACTCC
GTGAAGGGTTGTACAAGTTCAATCTTTCCATTCATCCATCTCATCCTAAATCTACTTTACATACTGCTAATACCATAGCTAAACCATTTGCTAATAAATGCTTGATGTCT
CAAGTTGTTCCTTCTGCTTACACTGTTAATATTATAGCTAAACCATGTGTTTAA

mRNA sequence

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Protein sequence

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MDSSTHTEIESSEGTENSSTSVINQGNKISTVKLGNDNFLMWKHSINHGGFHPQFGVGAFSPTPQMQAMLTSSDMNQDNNWYLDLGATNHLTNNFNNLAVSSDYNGGNQM
QDGNDTSLSISHFGYSSNRFFHLKNLLHVPQKTKNLISVSQFAKDNSIFFEFDPDFCYVKDHLNGQILLQGPLREGLYKFNLSIHPSHPKSTLHTANTIAKPFANKCLMS
QVVPSAYTVNIIAKPCV

Lag0038972 (gene) of Sponge gourd (AG-4) v1 genome