; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0038974 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038974
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionhomeobox-DDT domain protein RLT3 isoform X2
Genome locationchr2:32332619..32334842
RNA-Seq ExpressionLag0038974
SyntenyLag0038974
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR001356 - Homeobox domain
IPR009057 - Homeobox-like domain superfamily
IPR044977 - Homeobox-DDT domain protein RLT1/2/3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5459305.1 hypothetical protein F2P56_023262 [Juglans regia]1.7e-2446.25Show/hide
Query:  MEFRRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKREDEMMVSSTG---NEHR-LSRRNES-------------DLTHAG
        ME +RKTP QLQ+L  LYSEDKYPT+  +E YAA+LGL  +QVQGWF +KRRRDKRE+  +V S      +H  L+RRN S              +  A 
Subjt:  MEFRRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKREDEMMVSSTG---NEHR-LSRRNES-------------DLTHAG

Query:  RTRNSKNKFKTMVEGNIVHRRKRFDSIQSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGAF
           +S  +  +  +     R+K+   +Q+LL+ D+ L KVFRKDGPP G+EFD +PSG F
Subjt:  RTRNSKNKFKTMVEGNIVHRRKRFDSIQSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGAF

XP_022144420.1 homeobox-DDT domain protein RLT3 isoform X1 [Momordica charantia]2.6e-4162.84Show/hide
Query:  MEFRRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKREDEMMVSSTGNEHRLSRRNESDLTHAGRTRNSKNKFKTMVEGNI
        MEF+RKTPQQLQAL+T YSEDKYPTQS LE Y+A+LGLT RQVQGWFAQKRRRD+  +  + SST                 GRT +SK K++TMVEGNI
Subjt:  MEFRRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKREDEMMVSSTGNEHRLSRRNESDLTHAGRTRNSKNKFKTMVEGNI

Query:  VHRRKRFDSIQSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGAFLRCKG
        V R+K+ D+IQ L S DY L KV  KDGPP GA+FD +PSGAFL+CKG
Subjt:  VHRRKRFDSIQSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGAFLRCKG

XP_022144421.1 homeobox-DDT domain protein RLT3 isoform X2 [Momordica charantia]2.6e-4162.84Show/hide
Query:  MEFRRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKREDEMMVSSTGNEHRLSRRNESDLTHAGRTRNSKNKFKTMVEGNI
        MEF+RKTPQQLQAL+T YSEDKYPTQS LE Y+A+LGLT RQVQGWFAQKRRRD+  +  + SST                 GRT +SK K++TMVEGNI
Subjt:  MEFRRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKREDEMMVSSTGNEHRLSRRNESDLTHAGRTRNSKNKFKTMVEGNI

Query:  VHRRKRFDSIQSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGAFLRCKG
        V R+K+ D+IQ L S DY L KV  KDGPP GA+FD +PSGAFL+CKG
Subjt:  VHRRKRFDSIQSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGAFLRCKG

XP_041006835.1 homeobox-DDT domain protein RLT3 isoform X1 [Juglans microcarpa x Juglans regia]4.5e-2546.88Show/hide
Query:  MEFRRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKREDEMMVSSTG---NEHR-LSRRNES-------------DLTHAG
        ME +RKTP QLQ+L  LYSEDKYPT+  +E YAA+LGL  +QVQGWF +KRRRDKRE+  +V S      +H  L+RRN S              +  A 
Subjt:  MEFRRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKREDEMMVSSTG---NEHR-LSRRNES-------------DLTHAG

Query:  RTRNSKNKFKTMVEGNIVHRRKRFDSIQSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGAF
           +S  +  +  +     R+K+   +Q+LL+ DY L KVFRKDGPP G+EFD +PSG F
Subjt:  RTRNSKNKFKTMVEGNIVHRRKRFDSIQSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGAF

XP_041006836.1 homeobox-DDT domain protein RLT3 isoform X2 [Juglans microcarpa x Juglans regia]4.5e-2546.88Show/hide
Query:  MEFRRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKREDEMMVSSTG---NEHR-LSRRNES-------------DLTHAG
        ME +RKTP QLQ+L  LYSEDKYPT+  +E YAA+LGL  +QVQGWF +KRRRDKRE+  +V S      +H  L+RRN S              +  A 
Subjt:  MEFRRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKREDEMMVSSTG---NEHR-LSRRNES-------------DLTHAG

Query:  RTRNSKNKFKTMVEGNIVHRRKRFDSIQSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGAF
           +S  +  +  +     R+K+   +Q+LL+ DY L KVFRKDGPP G+EFD +PSG F
Subjt:  RTRNSKNKFKTMVEGNIVHRRKRFDSIQSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGAF

TrEMBL top hitse value%identityAlignment
A0A2I4G2C3 homeobox-DDT domain protein RLT3 isoform X38.3e-2546.25Show/hide
Query:  MEFRRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKREDEMMVSSTG---NEHR-LSRRNES-------------DLTHAG
        ME +RKTP QLQ+L  LYSEDKYPT+  +E YAA+LGL  +QVQGWF +KRRRDKRE+  +V S      +H  L+RRN S              +  A 
Subjt:  MEFRRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKREDEMMVSSTG---NEHR-LSRRNES-------------DLTHAG

Query:  RTRNSKNKFKTMVEGNIVHRRKRFDSIQSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGAF
           +S  +  +  +     R+K+   +Q+LL+ D+ L KVFRKDGPP G+EFD +PSG F
Subjt:  RTRNSKNKFKTMVEGNIVHRRKRFDSIQSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGAF

A0A6J1CRK0 homeobox-DDT domain protein RLT3 isoform X11.3e-4162.84Show/hide
Query:  MEFRRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKREDEMMVSSTGNEHRLSRRNESDLTHAGRTRNSKNKFKTMVEGNI
        MEF+RKTPQQLQAL+T YSEDKYPTQS LE Y+A+LGLT RQVQGWFAQKRRRD+  +  + SST                 GRT +SK K++TMVEGNI
Subjt:  MEFRRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKREDEMMVSSTGNEHRLSRRNESDLTHAGRTRNSKNKFKTMVEGNI

Query:  VHRRKRFDSIQSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGAFLRCKG
        V R+K+ D+IQ L S DY L KV  KDGPP GA+FD +PSGAFL+CKG
Subjt:  VHRRKRFDSIQSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGAFLRCKG

A0A6J1CTC7 homeobox-DDT domain protein RLT3 isoform X21.3e-4162.84Show/hide
Query:  MEFRRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKREDEMMVSSTGNEHRLSRRNESDLTHAGRTRNSKNKFKTMVEGNI
        MEF+RKTPQQLQAL+T YSEDKYPTQS LE Y+A+LGLT RQVQGWFAQKRRRD+  +  + SST                 GRT +SK K++TMVEGNI
Subjt:  MEFRRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKREDEMMVSSTGNEHRLSRRNESDLTHAGRTRNSKNKFKTMVEGNI

Query:  VHRRKRFDSIQSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGAFLRCKG
        V R+K+ D+IQ L S DY L KV  KDGPP GA+FD +PSGAFL+CKG
Subjt:  VHRRKRFDSIQSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGAFLRCKG

A0A6P9EP90 homeobox-DDT domain protein RLT3 isoform X28.3e-2546.25Show/hide
Query:  MEFRRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKREDEMMVSSTG---NEHR-LSRRNES-------------DLTHAG
        ME +RKTP QLQ+L  LYSEDKYPT+  +E YAA+LGL  +QVQGWF +KRRRDKRE+  +V S      +H  L+RRN S              +  A 
Subjt:  MEFRRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKREDEMMVSSTG---NEHR-LSRRNES-------------DLTHAG

Query:  RTRNSKNKFKTMVEGNIVHRRKRFDSIQSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGAF
           +S  +  +  +     R+K+   +Q+LL+ D+ L KVFRKDGPP G+EFD +PSG F
Subjt:  RTRNSKNKFKTMVEGNIVHRRKRFDSIQSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGAF

A0A6P9ES70 homeobox-DDT domain protein RLT3 isoform X18.3e-2546.25Show/hide
Query:  MEFRRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKREDEMMVSSTG---NEHR-LSRRNES-------------DLTHAG
        ME +RKTP QLQ+L  LYSEDKYPT+  +E YAA+LGL  +QVQGWF +KRRRDKRE+  +V S      +H  L+RRN S              +  A 
Subjt:  MEFRRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKREDEMMVSSTG---NEHR-LSRRNES-------------DLTHAG

Query:  RTRNSKNKFKTMVEGNIVHRRKRFDSIQSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGAF
           +S  +  +  +     R+K+   +Q+LL+ D+ L KVFRKDGPP G+EFD +PSG F
Subjt:  RTRNSKNKFKTMVEGNIVHRRKRFDSIQSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGAF

SwissProt top hitse value%identityAlignment
F4HY56 Homeobox-DDT domain protein RLT13.4e-0726.9Show/hide
Query:  KTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKRE------------------------------DEMMVSSTGNEHRLSRRN
        KTP QL+ L  +YSE+KYP+++T    +  L L+ RQ+Q WF  +R +DK++                              ++   S +G+E   S  +
Subjt:  KTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKRE------------------------------DEMMVSSTGNEHRLSRRN

Query:  ESDLTHAGRTRNSK---NKFKTMVEGNIVHRRKRFDSIQSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGAF
         S    A  + +S+   ++++TM + +   R       ++++  +  L +  R DGP  G EFD +P GAF
Subjt:  ESDLTHAGRTRNSK---NKFKTMVEGNIVHRRKRFDSIQSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGAF

F4JRF5 Homeobox-DDT domain protein RLT33.1e-1642.55Show/hide
Query:  RRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKREDEMMVSSTGNEHRLSRRNES--DLTHAGRTRNSKNKFKTMVEGNIV
        +RK+P Q+QAL   Y E  YPT   +E    SLGLT ++V+GWF ++R R K      V S  N+  L  +N    D +    + +S+     + E  IV
Subjt:  RRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKREDEMMVSSTGNEHRLSRRNES--DLTHAGRTRNSKNKFKTMVEGNIV

Query:  HRRKRFDSIQSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGA
          RK   S Q+LL S + L KVFRKDGP  G+EFDH+PSGA
Subjt:  HRRKRFDSIQSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGA

Q9FFH1 Homeobox-DDT domain protein RLT26.4e-0629.09Show/hide
Query:  RRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRD-------KREDEMMVSSTGNEHRLSRRNESDLTHAGRTRNSKNKFKTMV
        + KT  QL+ L   YS + YP+++     +  L L+ RQ+Q WF  +R ++       KR+ + +V+ T  E      N  DL       + +    +  
Subjt:  RRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRD-------KREDEMMVSSTGNEHRLSRRNESDLTHAGRTRNSKNKFKTMV

Query:  EGNIVHRRKRFDSIQSLLSSDY---NLMKVFRKDGPPFGAEFDHIPSGAFLRCKGILQPMRRAAT
         G  V RR    S   + +  Y    L +  R +GP  G EFD +P GAF     I  P  R AT
Subjt:  EGNIVHRRKRFDSIQSLLSSDY---NLMKVFRKDGPPFGAEFDHIPSGAFLRCKGILQPMRRAAT

Arabidopsis top hitse value%identityAlignment
AT1G28420.1 homeobox-12.4e-0826.9Show/hide
Query:  KTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKRE------------------------------DEMMVSSTGNEHRLSRRN
        KTP QL+ L  +YSE+KYP+++T    +  L L+ RQ+Q WF  +R +DK++                              ++   S +G+E   S  +
Subjt:  KTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKRE------------------------------DEMMVSSTGNEHRLSRRN

Query:  ESDLTHAGRTRNSK---NKFKTMVEGNIVHRRKRFDSIQSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGAF
         S    A  + +S+   ++++TM + +   R       ++++  +  L +  R DGP  G EFD +P GAF
Subjt:  ESDLTHAGRTRNSK---NKFKTMVEGNIVHRRKRFDSIQSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGAF

AT4G03250.1 Homeodomain-like superfamily protein9.2e-0841.79Show/hide
Query:  KTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKREDEMMVSSTGNEHRLS
        KTP Q+ AL   Y+E KYPT+      A  +GLT +QV GWF  +R +DKR  +   ++ G++ R S
Subjt:  KTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKREDEMMVSSTGNEHRLS

AT4G12750.1 Homeodomain-like transcriptional regulator2.2e-1742.55Show/hide
Query:  RRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKREDEMMVSSTGNEHRLSRRNES--DLTHAGRTRNSKNKFKTMVEGNIV
        +RK+P Q+QAL   Y E  YPT   +E    SLGLT ++V+GWF ++R R K      V S  N+  L  +N    D +    + +S+     + E  IV
Subjt:  RRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKREDEMMVSSTGNEHRLSRRNES--DLTHAGRTRNSKNKFKTMVEGNIV

Query:  HRRKRFDSIQSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGA
          RK   S Q+LL S + L KVFRKDGP  G+EFDH+PSGA
Subjt:  HRRKRFDSIQSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGA

AT5G44180.1 Homeodomain-like transcriptional regulator4.5e-0729.09Show/hide
Query:  RRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRD-------KREDEMMVSSTGNEHRLSRRNESDLTHAGRTRNSKNKFKTMV
        + KT  QL+ L   YS + YP+++     +  L L+ RQ+Q WF  +R ++       KR+ + +V+ T  E      N  DL       + +    +  
Subjt:  RRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRD-------KREDEMMVSSTGNEHRLSRRNESDLTHAGRTRNSKNKFKTMV

Query:  EGNIVHRRKRFDSIQSLLSSDY---NLMKVFRKDGPPFGAEFDHIPSGAFLRCKGILQPMRRAAT
         G  V RR    S   + +  Y    L +  R +GP  G EFD +P GAF     I  P  R AT
Subjt:  EGNIVHRRKRFDSIQSLLSSDY---NLMKVFRKDGPPFGAEFDHIPSGAFLRCKGILQPMRRAAT

AT5G44180.2 Homeodomain-like transcriptional regulator4.5e-0729.09Show/hide
Query:  RRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRD-------KREDEMMVSSTGNEHRLSRRNESDLTHAGRTRNSKNKFKTMV
        + KT  QL+ L   YS + YP+++     +  L L+ RQ+Q WF  +R ++       KR+ + +V+ T  E      N  DL       + +    +  
Subjt:  RRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRD-------KREDEMMVSSTGNEHRLSRRNESDLTHAGRTRNSKNKFKTMV

Query:  EGNIVHRRKRFDSIQSLLSSDY---NLMKVFRKDGPPFGAEFDHIPSGAFLRCKGILQPMRRAAT
         G  V RR    S   + +  Y    L +  R +GP  G EFD +P GAF     I  P  R AT
Subjt:  EGNIVHRRKRFDSIQSLLSSDY---NLMKVFRKDGPPFGAEFDHIPSGAFLRCKGILQPMRRAAT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTTAGGAGGAAAACTCCTCAACAACTTCAAGCCCTTAATACGTTATATTCAGAGGACAAATATCCTACGCAAAGCACATTGGAAACGTATGCTGCCAGTTTAGG
ATTGACCTGCAGGCAGGTACAAGGATGGTTTGCTCAGAAGAGGAGGAGGGACAAAAGGGAGGATGAAATGATGGTATCATCTACTGGTAATGAACATAGGCTCAGCCGAA
GAAATGAGTCTGATCTTACACATGCAGGGAGGACTCGAAATTCAAAAAATAAATTTAAAACTATGGTTGAGGGCAACATTGTTCATAGAAGGAAGAGGTTTGATTCAATT
CAGAGTTTGCTTTCTTCAGATTACAATCTGATGAAGGTATTTCGCAAAGATGGCCCACCTTTTGGTGCTGAATTTGATCATATTCCCTCTGGAGCATTTCTCCGTTGCAA
AGGTATTCTGCAGCCAATGAGGCGTGCTGCTACTCCTTTTCCGCTCCATCAACTGACCGCTGCCGTCGACTTTGCCATTGCTGACGATACATCTGCTGCCATGTCTTCTT
GA
mRNA sequenceShow/hide mRNA sequence
ATGGAATTTAGGAGGAAAACTCCTCAACAACTTCAAGCCCTTAATACGTTATATTCAGAGGACAAATATCCTACGCAAAGCACATTGGAAACGTATGCTGCCAGTTTAGG
ATTGACCTGCAGGCAGGTACAAGGATGGTTTGCTCAGAAGAGGAGGAGGGACAAAAGGGAGGATGAAATGATGGTATCATCTACTGGTAATGAACATAGGCTCAGCCGAA
GAAATGAGTCTGATCTTACACATGCAGGGAGGACTCGAAATTCAAAAAATAAATTTAAAACTATGGTTGAGGGCAACATTGTTCATAGAAGGAAGAGGTTTGATTCAATT
CAGAGTTTGCTTTCTTCAGATTACAATCTGATGAAGGTATTTCGCAAAGATGGCCCACCTTTTGGTGCTGAATTTGATCATATTCCCTCTGGAGCATTTCTCCGTTGCAA
AGGTATTCTGCAGCCAATGAGGCGTGCTGCTACTCCTTTTCCGCTCCATCAACTGACCGCTGCCGTCGACTTTGCCATTGCTGACGATACATCTGCTGCCATGTCTTCTT
GA
Protein sequenceShow/hide protein sequence
MEFRRKTPQQLQALNTLYSEDKYPTQSTLETYAASLGLTCRQVQGWFAQKRRRDKREDEMMVSSTGNEHRLSRRNESDLTHAGRTRNSKNKFKTMVEGNIVHRRKRFDSI
QSLLSSDYNLMKVFRKDGPPFGAEFDHIPSGAFLRCKGILQPMRRAATPFPLHQLTAAVDFAIADDTSAAMSS