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Lag0038976 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038976
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionNuclear transcription factor Y subunit
Genome locationchr2:32360462..32361010
RNA-Seq ExpressionLag0038976
SyntenyLag0038976
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAV84207.1 DUF4283 domain-containing protein/zf-CCHC_4 domain-containing protein [Cephalotus follicularis]2.6e-0442.59Show/hide
Query:  WITIRYERLPGFYFKCGRIGHGARECKHEDVEGMSNIDKPVDVGNGDGLLLENF
        W+T +YE+LP F++ CGRIGH  REC+H  ++     DK  D   G  +  E+F
Subjt:  WITIRYERLPGFYFKCGRIGHGARECKHEDVEGMSNIDKPVDVGNGDGLLLENF
TrEMBL top hitse value%identityAlignment
A0A1Q3CVF1 DUF4283 domain-containing protein/zf-CCHC_4 domain-containing protein1.3e-0442.59Show/hide
Query:  WITIRYERLPGFYFKCGRIGHGARECKHEDVEGMSNIDKPVDVGNGDGLLLENF
        W+T +YE+LP F++ CGRIGH  REC+H  ++     DK  D   G  +  E+F
Subjt:  WITIRYERLPGFYFKCGRIGHGARECKHEDVEGMSNIDKPVDVGNGDGLLLENF
A0A7N2KYD2 Nuclear transcription factor Y subunit6.3e-0431.58Show/hide
Query:  DDDLNANCWITIRYERLPGFYFKCGRIGHGARECKHEDVEGMSNIDKPVDVGNGDGLLLENFLVRE-------ASEVRSVDEGIVGDRKVEQVHSNDFTL
        D +  +N WI  +YER+  F FKCGR+GH    C   DVE   N+ +P   G G  L  E+   R        A   +S DE   G RK       +   
Subjt:  DDDLNANCWITIRYERLPGFYFKCGRIGHGARECKHEDVEGMSNIDKPVDVGNGDGLLLENFLVRE-------ASEVRSVDEGIVGDRKVEQVHSNDFTL

Query:  KEFMEEDGTQSQNN
        +  +++ GT+ Q++
Subjt:  KEFMEEDGTQSQNN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAAGGATGATGATTTGAACGCGAATTGTTGGATAACAATTCGATACGAACGGCTGCCTGGTTTTTACTTCAAATGTGGTCGCATTGGCCATGGAGCTCGTGAATG
CAAGCATGAAGACGTGGAGGGGATGTCCAATATTGATAAGCCTGTGGATGTGGGGAATGGCGATGGCCTACTCCTGGAGAATTTTTTAGTCAGAGAGGCTTCTGAAGTTA
GAAGTGTTGACGAGGGGATTGTAGGGGATCGAAAGGTCGAGCAAGTTCATTCGAATGATTTTACTCTTAAGGAATTTATGGAGGAGGATGGAACCCAATCCCAGAATAAT
GCAGGGGAGCAGTTTCTGGTCACCAGTTCTGCTCCTTTAATTCAGAATGAGGGCTCTAGTGGGGGATTTGTTTTCTCTGCAAGGAAAAAGTTGAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTGAAGGATGATGATTTGAACGCGAATTGTTGGATAACAATTCGATACGAACGGCTGCCTGGTTTTTACTTCAAATGTGGTCGCATTGGCCATGGAGCTCGTGAATG
CAAGCATGAAGACGTGGAGGGGATGTCCAATATTGATAAGCCTGTGGATGTGGGGAATGGCGATGGCCTACTCCTGGAGAATTTTTTAGTCAGAGAGGCTTCTGAAGTTA
GAAGTGTTGACGAGGGGATTGTAGGGGATCGAAAGGTCGAGCAAGTTCATTCGAATGATTTTACTCTTAAGGAATTTATGGAGGAGGATGGAACCCAATCCCAGAATAAT
GCAGGGGAGCAGTTTCTGGTCACCAGTTCTGCTCCTTTAATTCAGAATGAGGGCTCTAGTGGGGGATTTGTTTTCTCTGCAAGGAAAAAGTTGAATTAG
Protein sequenceShow/hide protein sequence
MLKDDDLNANCWITIRYERLPGFYFKCGRIGHGARECKHEDVEGMSNIDKPVDVGNGDGLLLENFLVREASEVRSVDEGIVGDRKVEQVHSNDFTLKEFMEEDGTQSQNN
AGEQFLVTSSAPLIQNEGSSGGFVFSARKKLN