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Lag0038978 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038978
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionEukaryotic translation initiation factor 3 subunit I
Genome locationchr2:32456423..32458863
RNA-Seq ExpressionLag0038978
SyntenyLag0038978
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0032991 - protein-containing complex (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR015943 - WD40/YVTN repeat-like-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAF2143618.1 unnamed protein product [Brassica napus]8.8e-1155.17Show/hide
Query:  MLDCLVDDVKMSFDSYQSLGFEVVLGGGQDASAI-ITDHR-----------ILQEDIGGVNDHFLPINALAFNPDGKSFSIRGELDY
        +L   V  V ++  S   L   VVLGGGQDASA+  TDHR           ILQE+IGGV  HF PINALAFNPDGKSFS  GE  Y
Subjt:  MLDCLVDDVKMSFDSYQSLGFEVVLGGGQDASAI-ITDHR-----------ILQEDIGGVNDHFLPINALAFNPDGKSFSIRGELDY

CAG7895406.1 unnamed protein product [Brassica rapa]8.8e-1155.17Show/hide
Query:  MLDCLVDDVKMSFDSYQSLGFEVVLGGGQDASAI-ITDHR-----------ILQEDIGGVNDHFLPINALAFNPDGKSFSIRGELDY
        +L   V  V ++  S   L   VVLGGGQDASA+  TDHR           ILQE+IGGV  HF PINALAFNPDGKSFS  GE  Y
Subjt:  MLDCLVDDVKMSFDSYQSLGFEVVLGGGQDASAI-ITDHR-----------ILQEDIGGVNDHFLPINALAFNPDGKSFSIRGELDY

CDY34145.1 BnaA02g28950D [Brassica napus]8.8e-1155.17Show/hide
Query:  MLDCLVDDVKMSFDSYQSLGFEVVLGGGQDASAI-ITDHR-----------ILQEDIGGVNDHFLPINALAFNPDGKSFSIRGELDY
        +L   V  V ++  S   L   VVLGGGQDASA+  TDHR           ILQE+IGGV  HF PINALAFNPDGKSFS  GE  Y
Subjt:  MLDCLVDDVKMSFDSYQSLGFEVVLGGGQDASAI-ITDHR-----------ILQEDIGGVNDHFLPINALAFNPDGKSFSIRGELDY

KAF2597520.1 hypothetical protein F2Q68_00011701 [Brassica cretica]8.8e-1155.17Show/hide
Query:  MLDCLVDDVKMSFDSYQSLGFEVVLGGGQDASAI-ITDHR-----------ILQEDIGGVNDHFLPINALAFNPDGKSFSIRGELDY
        +L   V  V ++  S   L   VVLGGGQDASA+  TDHR           ILQE+IGGV  HF PINALAFNPDGKSFS  GE  Y
Subjt:  MLDCLVDDVKMSFDSYQSLGFEVVLGGGQDASAI-ITDHR-----------ILQEDIGGVNDHFLPINALAFNPDGKSFSIRGELDY

VDC91890.1 unnamed protein product [Brassica rapa]8.8e-1155.17Show/hide
Query:  MLDCLVDDVKMSFDSYQSLGFEVVLGGGQDASAI-ITDHR-----------ILQEDIGGVNDHFLPINALAFNPDGKSFSIRGELDY
        +L   V  V ++  S   L   VVLGGGQDASA+  TDHR           ILQE+IGGV  HF PINALAFNPDGKSFS  GE  Y
Subjt:  MLDCLVDDVKMSFDSYQSLGFEVVLGGGQDASAI-ITDHR-----------ILQEDIGGVNDHFLPINALAFNPDGKSFSIRGELDY

TrEMBL top hitse value%identityAlignment
A0A078H6F7 Eukaryotic translation initiation factor 3 subunit I4.3e-1155.17Show/hide
Query:  MLDCLVDDVKMSFDSYQSLGFEVVLGGGQDASAI-ITDHR-----------ILQEDIGGVNDHFLPINALAFNPDGKSFSIRGELDY
        +L   V  V ++  S   L   VVLGGGQDASA+  TDHR           ILQE+IGGV  HF PINALAFNPDGKSFS  GE  Y
Subjt:  MLDCLVDDVKMSFDSYQSLGFEVVLGGGQDASAI-ITDHR-----------ILQEDIGGVNDHFLPINALAFNPDGKSFSIRGELDY

A0A0D3AW77 Eukaryotic translation initiation factor 3 subunit I4.3e-1155.17Show/hide
Query:  MLDCLVDDVKMSFDSYQSLGFEVVLGGGQDASAI-ITDHR-----------ILQEDIGGVNDHFLPINALAFNPDGKSFSIRGELDY
        +L   V  V ++  S   L   VVLGGGQDASA+  TDHR           ILQE+IGGV  HF PINALAFNPDGKSFS  GE  Y
Subjt:  MLDCLVDDVKMSFDSYQSLGFEVVLGGGQDASAI-ITDHR-----------ILQEDIGGVNDHFLPINALAFNPDGKSFSIRGELDY

A0A3N6S0H8 Eukaryotic translation initiation factor 3 subunit I4.3e-1155.17Show/hide
Query:  MLDCLVDDVKMSFDSYQSLGFEVVLGGGQDASAI-ITDHR-----------ILQEDIGGVNDHFLPINALAFNPDGKSFSIRGELDY
        +L   V  V ++  S   L   VVLGGGQDASA+  TDHR           ILQE+IGGV  HF PINALAFNPDGKSFS  GE  Y
Subjt:  MLDCLVDDVKMSFDSYQSLGFEVVLGGGQDASAI-ITDHR-----------ILQEDIGGVNDHFLPINALAFNPDGKSFSIRGELDY

A0A6J0JEC6 Eukaryotic translation initiation factor 3 subunit I4.3e-1155.17Show/hide
Query:  MLDCLVDDVKMSFDSYQSLGFEVVLGGGQDASAI-ITDHR-----------ILQEDIGGVNDHFLPINALAFNPDGKSFSIRGELDY
        +L   V  V ++  S   L   VVLGGGQDASA+  TDHR           ILQE+IGGV  HF PINALAFNPDGKSFS  GE  Y
Subjt:  MLDCLVDDVKMSFDSYQSLGFEVVLGGGQDASAI-ITDHR-----------ILQEDIGGVNDHFLPINALAFNPDGKSFSIRGELDY

M4EW29 Eukaryotic translation initiation factor 3 subunit I4.3e-1155.17Show/hide
Query:  MLDCLVDDVKMSFDSYQSLGFEVVLGGGQDASAI-ITDHR-----------ILQEDIGGVNDHFLPINALAFNPDGKSFSIRGELDY
        +L   V  V ++  S   L   VVLGGGQDASA+  TDHR           ILQE+IGGV  HF PINALAFNPDGKSFS  GE  Y
Subjt:  MLDCLVDDVKMSFDSYQSLGFEVVLGGGQDASAI-ITDHR-----------ILQEDIGGVNDHFLPINALAFNPDGKSFSIRGELDY

SwissProt top hitse value%identityAlignment
B3N4C7 Eukaryotic translation initiation factor 3 subunit I4.7e-0735.45Show/hide
Query:  LYKGCTTMPLSSKDEGVVGVDSLMLDCL---VDDVKMSFDSYQSLGFEVVLGGGQDASAIITD------------HRILQEDIGGVNDHFLPINALAFNP
        L K  T    +SKD      DS  L CL     +  ++  +   +   VVLGGGQDA  + T             H I +E+   +  HF PIN+LAF+P
Subjt:  LYKGCTTMPLSSKDEGVVGVDSLMLDCL---VDDVKMSFDSYQSLGFEVVLGGGQDASAIITD------------HRILQEDIGGVNDHFLPINALAFNP

Query:  DGKSFSIRGE
        DGKS++  GE
Subjt:  DGKSFSIRGE

Q16K15 Eukaryotic translation initiation factor 3 subunit I3.6e-0730.94Show/hide
Query:  GTTSLLSLIRVRLVCSVDFTDADATDINLLYKGCTTMPLSSKDEGVVGVDSLMLDCL---VDDVKMSFDSYQSLGFEVVLGGGQDASAIITD--------
        G+  +  L   + + SV+    +  D+ L   G T +  +SKD      DS  L CL     +  ++  +   +   VVLGGGQ+A  + T         
Subjt:  GTTSLLSLIRVRLVCSVDFTDADATDINLLYKGCTTMPLSSKDEGVVGVDSLMLDCL---VDDVKMSFDSYQSLGFEVVLGGGQDASAIITD--------

Query:  ----HRILQEDIGGVNDHFLPINALAFNPDGKSFSIRGE
            H + +E+   V  HF PIN+LAF+PDGKS++  GE
Subjt:  ----HRILQEDIGGVNDHFLPINALAFNPDGKSFSIRGE

Q1HPW4 Eukaryotic translation initiation factor 3 subunit I5.6e-0834.75Show/hide
Query:  TDINLLYKGCTTMPLSSKDEGVVGVDSLMLDCLVD---DVKMSFDSYQSLGFEVVLGGGQDASAIITD------------HRILQEDIGGVNDHFLPINA
        TD+ L   G T    +SKD      D+  L+ L +   +  ++  +   +   VVLGGGQDA  + T             H + +E+ G V  HF PIN+
Subjt:  TDINLLYKGCTTMPLSSKDEGVVGVDSLMLDCLVD---DVKMSFDSYQSLGFEVVLGGGQDASAIITD------------HRILQEDIGGVNDHFLPINA

Query:  LAFNPDGKSFSIRGELDY
        LAF+PDGKS++  GE  Y
Subjt:  LAFNPDGKSFSIRGELDY

Q38884 Eukaryotic translation initiation factor 3 subunit I4.4e-1366.15Show/hide
Query:  VVLGGGQDASAI-ITDHR-----------ILQEDIGGVNDHFLPINALAFNPDGKSFSIRGELDY
        VVLGGGQDASA+  TDHR           ILQE+IGGV  HF PINALAFNPDGKSFS  GE  Y
Subjt:  VVLGGGQDASAI-ITDHR-----------ILQEDIGGVNDHFLPINALAFNPDGKSFSIRGELDY

Q7PP77 Eukaryotic translation initiation factor 3 subunit I2.5e-0833.81Show/hide
Query:  GTTSLLSLIRVRLVCSVDFTDADATDINLLYKGCTTMPLSSKDEGVVGVDSLMLDCL---VDDVKMSFDSYQSLGFEVVLGGGQDASAIITD--------
        G+  +  L  V+ + SV+   A  TD+ +   G T    SSKD      DS  L CL     +  ++      L   V LGGGQDA  + T         
Subjt:  GTTSLLSLIRVRLVCSVDFTDADATDINLLYKGCTTMPLSSKDEGVVGVDSLMLDCL---VDDVKMSFDSYQSLGFEVVLGGGQDASAIITD--------

Query:  ----HRILQEDIGGVNDHFLPINALAFNPDGKSFSIRGE
            H + +E+   V  HF PIN++AF+PDGKSF+  GE
Subjt:  ----HRILQEDIGGVNDHFLPINALAFNPDGKSFSIRGE

Arabidopsis top hitse value%identityAlignment
AT2G46280.1 TGF-beta receptor interacting protein 13.1e-1466.15Show/hide
Query:  VVLGGGQDASAI-ITDHR-----------ILQEDIGGVNDHFLPINALAFNPDGKSFSIRGELDY
        VVLGGGQDASA+  TDHR           ILQE+IGGV  HF PINALAFNPDGKSFS  GE  Y
Subjt:  VVLGGGQDASAI-ITDHR-----------ILQEDIGGVNDHFLPINALAFNPDGKSFSIRGELDY

AT2G46280.2 TGF-beta receptor interacting protein 13.1e-1466.15Show/hide
Query:  VVLGGGQDASAI-ITDHR-----------ILQEDIGGVNDHFLPINALAFNPDGKSFSIRGELDY
        VVLGGGQDASA+  TDHR           ILQE+IGGV  HF PINALAFNPDGKSFS  GE  Y
Subjt:  VVLGGGQDASAI-ITDHR-----------ILQEDIGGVNDHFLPINALAFNPDGKSFSIRGELDY

AT2G46290.1 Transducin/WD40 repeat-like superfamily protein1.2e-1364.62Show/hide
Query:  VVLGGGQDASAI-ITDHR-----------ILQEDIGGVNDHFLPINALAFNPDGKSFSIRGELDY
        VVLGGGQDASA+  TDHR           ILQE+IGGV  HF PINALAF+PDGKSFS  GE  Y
Subjt:  VVLGGGQDASAI-ITDHR-----------ILQEDIGGVNDHFLPINALAFNPDGKSFSIRGELDY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGGTGGGATCCCTTTGTTCAAGCCCCAGAGTCAGCACTTAAGGGAACAACCTCTCTACTATCCCTAATTCGGGTAAGACTTGTTTGTTCCGTTGATTTTACTGA
TGCTGATGCTACTGATATTAATCTGTTATATAAAGGTTGTACAACGATGCCCTTAAGTTCTAAGGATGAAGGTGTTGTGGGGGTAGACTCTTTAATGCTAGATTGTTTAG
TTGATGATGTTAAAATGTCTTTCGACTCATATCAGTCTCTTGGGTTTGAAGTAGTACTTGGTGGTGGACAGGATGCTTCAGCAATAATAACTGATCATCGGATCCTTCAA
GAAGATATTGGAGGTGTAAACGACCATTTTTTACCCATTAATGCTCTGGCTTTCAATCCTGATGGCAAGAGTTTTTCAATTAGAGGTGAGTTGGATTATGAAGGTAATTA
CGATGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGGGTGGGATCCCTTTGTTCAAGCCCCAGAGTCAGCACTTAAGGGAACAACCTCTCTACTATCCCTAATTCGGGTAAGACTTGTTTGTTCCGTTGATTTTACTGA
TGCTGATGCTACTGATATTAATCTGTTATATAAAGGTTGTACAACGATGCCCTTAAGTTCTAAGGATGAAGGTGTTGTGGGGGTAGACTCTTTAATGCTAGATTGTTTAG
TTGATGATGTTAAAATGTCTTTCGACTCATATCAGTCTCTTGGGTTTGAAGTAGTACTTGGTGGTGGACAGGATGCTTCAGCAATAATAACTGATCATCGGATCCTTCAA
GAAGATATTGGAGGTGTAAACGACCATTTTTTACCCATTAATGCTCTGGCTTTCAATCCTGATGGCAAGAGTTTTTCAATTAGAGGTGAGTTGGATTATGAAGGTAATTA
CGATGATTAA
Protein sequenceShow/hide protein sequence
MRGWDPFVQAPESALKGTTSLLSLIRVRLVCSVDFTDADATDINLLYKGCTTMPLSSKDEGVVGVDSLMLDCLVDDVKMSFDSYQSLGFEVVLGGGQDASAIITDHRILQ
EDIGGVNDHFLPINALAFNPDGKSFSIRGELDYEGNYDD