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Lag0038986 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038986
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr2:32589410..32589928
RNA-Seq ExpressionLag0038986
SyntenyLag0038986
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEC84982.1 hypothetical protein OsI_32248 [Oryza sativa Indica Group]6.2e-2458.16Show/hide
Query:  LPQKVLVNRMKGILNELISHNQSAFIPGRCVVDNDILGYECIHALKAKKVGRTGWASLKLDMSKAYDSVEWVFLERMMLRMEFAMEWVELVLRCISSV
        L  KVL NR+K IL ++IS NQSAF+P R + DN +L YE  H ++ K+ GR G+A+LKLDMSKAYD VEW FLE+MM+R+ FA  WV+L++RC+S+V
Subjt:  LPQKVLVNRMKGILNELISHNQSAFIPGRCVVDNDILGYECIHALKAKKVGRTGWASLKLDMSKAYDSVEWVFLERMMLRMEFAMEWVELVLRCISSV

XP_015386227.1 uncharacterized protein LOC107177230 [Citrus sinensis]1.0e-2356.84Show/hide
Query:  KVLVNRMKGILNELISHNQSAFIPGRCVVDNDILGYECIHALKAKKVGRTGWASLKLDMSKAYDSVEWVFLERMMLRMEFAMEWVELVLRCISSV
        K+L NRMK +L+ +IS NQSAF+PGR + DN ++  E +H LK K+ G+TG A+LK+DMSKAYD +EW FL+ MML++ FA  WVEL+L C+S+V
Subjt:  KVLVNRMKGILNELISHNQSAFIPGRCVVDNDILGYECIHALKAKKVGRTGWASLKLDMSKAYDSVEWVFLERMMLRMEFAMEWVELVLRCISSV

XP_018814859.1 uncharacterized protein LOC108986632 [Juglans regia]8.0e-2443.57Show/hide
Query:  YLNADIIWNPVRSIYPDFLPIPNPPT--------------NTLPQKVLVNRMKGILNELISHNQSAFIPGRCVVDNDILGYECIHALKAKKVGRTGWASL
        +LN +  + P+   Y   +P    P                 +  KVLVNR KG+L+E+IS NQSAFIPGR + DN +L YE +H +K  K G+ G  ++
Subjt:  YLNADIIWNPVRSIYPDFLPIPNPPT--------------NTLPQKVLVNRMKGILNELISHNQSAFIPGRCVVDNDILGYECIHALKAKKVGRTGWASL

Query:  KLDMSKAYDSVEWVFLERMMLRMEFAMEWVELVLRCISSV
        KLDMSKAYD +EW F++ +M ++ F +EW ELV+RCI+SV
Subjt:  KLDMSKAYDSVEWVFLERMMLRMEFAMEWVELVLRCISSV

XP_040249920.1 uncharacterized protein LOC109742703 isoform X1 [Aegilops tauschii subsp. strangulata]1.4e-2356.12Show/hide
Query:  LPQKVLVNRMKGILNELISHNQSAFIPGRCVVDNDILGYECIHALKAKKVGRTGWASLKLDMSKAYDSVEWVFLERMMLRMEFAMEWVELVLRCISSV
        L  KVL NR+K IL ++IS NQSAF+PGR + DN +L YEC H ++ K+ G+ G+A++KLDMSKAYD VEW FLE+MM ++ F   W++LV+ CIS+V
Subjt:  LPQKVLVNRMKGILNELISHNQSAFIPGRCVVDNDILGYECIHALKAKKVGRTGWASLKLDMSKAYDSVEWVFLERMMLRMEFAMEWVELVLRCISSV

XP_040249922.1 uncharacterized protein LOC109742703 isoform X3 [Aegilops tauschii subsp. strangulata]1.4e-2356.12Show/hide
Query:  LPQKVLVNRMKGILNELISHNQSAFIPGRCVVDNDILGYECIHALKAKKVGRTGWASLKLDMSKAYDSVEWVFLERMMLRMEFAMEWVELVLRCISSV
        L  KVL NR+K IL ++IS NQSAF+PGR + DN +L YEC H ++ K+ G+ G+A++KLDMSKAYD VEW FLE+MM ++ F   W++LV+ CIS+V
Subjt:  LPQKVLVNRMKGILNELISHNQSAFIPGRCVVDNDILGYECIHALKAKKVGRTGWASLKLDMSKAYDSVEWVFLERMMLRMEFAMEWVELVLRCISSV

TrEMBL top hitse value%identityAlignment
A0A2I4E634 uncharacterized protein LOC1089866323.9e-2443.57Show/hide
Query:  YLNADIIWNPVRSIYPDFLPIPNPPT--------------NTLPQKVLVNRMKGILNELISHNQSAFIPGRCVVDNDILGYECIHALKAKKVGRTGWASL
        +LN +  + P+   Y   +P    P                 +  KVLVNR KG+L+E+IS NQSAFIPGR + DN +L YE +H +K  K G+ G  ++
Subjt:  YLNADIIWNPVRSIYPDFLPIPNPPT--------------NTLPQKVLVNRMKGILNELISHNQSAFIPGRCVVDNDILGYECIHALKAKKVGRTGWASL

Query:  KLDMSKAYDSVEWVFLERMMLRMEFAMEWVELVLRCISSV
        KLDMSKAYD +EW F++ +M ++ F +EW ELV+RCI+SV
Subjt:  KLDMSKAYDSVEWVFLERMMLRMEFAMEWVELVLRCISSV

A0A803P8W5 Uncharacterized protein1.0e-2458.76Show/hide
Query:  LPQKVLVNRMKGILNELISHNQSAFIPGRCVVDNDILGYECIHALKAKKVGRTGWASLKLDMSKAYDSVEWVFLERMMLRMEFAMEWVELVLRCISS
        L  K +VNR K +L   IS NQSAF+PGR + DN +L +E +H LK KK GR  +A+LKLDMSKA+D VEWVFL+ +ML+M F M WVEL++RC+SS
Subjt:  LPQKVLVNRMKGILNELISHNQSAFIPGRCVVDNDILGYECIHALKAKKVGRTGWASLKLDMSKAYDSVEWVFLERMMLRMEFAMEWVELVLRCISS

A0A803QGA2 Uncharacterized protein6.4e-2761.05Show/hide
Query:  KVLVNRMKGILNELISHNQSAFIPGRCVVDNDILGYECIHALKAKKVGRTGWASLKLDMSKAYDSVEWVFLERMMLRMEFAMEWVELVLRCISSV
        KVL+NR+K +L  LIS NQSAF+PGR + D+ ++ YEC+H LKA+KVGR  + ++KLDMSKAYD VEW F+E+MML+M F  EWV +VL+C+SSV
Subjt:  KVLVNRMKGILNELISHNQSAFIPGRCVVDNDILGYECIHALKAKKVGRTGWASLKLDMSKAYDSVEWVFLERMMLRMEFAMEWVELVLRCISSV

B8BE31 Reverse transcriptase domain-containing protein3.0e-2458.16Show/hide
Query:  LPQKVLVNRMKGILNELISHNQSAFIPGRCVVDNDILGYECIHALKAKKVGRTGWASLKLDMSKAYDSVEWVFLERMMLRMEFAMEWVELVLRCISSV
        L  KVL NR+K IL ++IS NQSAF+P R + DN +L YE  H ++ K+ GR G+A+LKLDMSKAYD VEW FLE+MM+R+ FA  WV+L++RC+S+V
Subjt:  LPQKVLVNRMKGILNELISHNQSAFIPGRCVVDNDILGYECIHALKAKKVGRTGWASLKLDMSKAYDSVEWVFLERMMLRMEFAMEWVELVLRCISSV

B9FNE2 Reverse transcriptase domain-containing protein3.0e-2458.16Show/hide
Query:  LPQKVLVNRMKGILNELISHNQSAFIPGRCVVDNDILGYECIHALKAKKVGRTGWASLKLDMSKAYDSVEWVFLERMMLRMEFAMEWVELVLRCISSV
        L  KVL NR+K IL ++IS NQSAF+P R + DN +L YE  H ++ K+ GR G+A+LKLDMSKAYD VEW FLE+MM+R+ FA  WV+L++RC+S+V
Subjt:  LPQKVLVNRMKGILNELISHNQSAFIPGRCVVDNDILGYECIHALKAKKVGRTGWASLKLDMSKAYDSVEWVFLERMMLRMEFAMEWVELVLRCISSV

SwissProt top hitse value%identityAlignment
P14381 Transposon TX1 uncharacterized 149 kDa protein7.3e-0429.36Show/hide
Query:  WNPVRSIYPDFLPIPNPPTNTLPQKVLVNRMKGILNELISHNQSAFIPGRCVVDNDILGYECIHALKAKKVGRTGWASLKLDMSKAYDSVEWVFLERMML
        W PV  +  D+          +  K +  R+K +L E+I  +QS  +PGR + DN  L  + +H   A++ G    A L LD  KA+D V+  +L   + 
Subjt:  WNPVRSIYPDFLPIPNPPTNTLPQKVLVNRMKGILNELISHNQSAFIPGRCVVDNDILGYECIHALKAKKVGRTGWASLKLDMSKAYDSVEWVFLERMML

Query:  RMEFAMEWV
           F  ++V
Subjt:  RMEFAMEWV

Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases5.2e-1338.64Show/hide
Query:  LVNRMKGILNELISHNQSAFIPGRCVVDNDILGYECIHALKAKKVGRTGWASLKLDMSKAYDSVEWVFLERMMLRMEFAMEWVELVLR
        +V R+K ++  LI   Q++FIPGR   DN +   E +H+++ KK G  GW  LKLD+ KAYD + W +LE  ++   F   W+  + R
Subjt:  LVNRMKGILNELISHNQSAFIPGRCVVDNDILGYECIHALKAKKVGRTGWASLKLDMSKAYDSVEWVFLERMMLRMEFAMEWVELVLR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCAATGGAATAGTAAGGATAGAGCGTACCTCGCGAGGGCTAAAGTGATGCCGAAAGAGTTCCTCGCTCCACTGACCAGAGACAGTAAGGAGATCAGCCACTCGAG
TATCAAGATCCAACGTAGCTGGGGATCGTACCTTAACGCAGACATCATCTGGAATCCAGTTAGATCCATATACCCTGACTTTCTCCCCATTCCCAATCCTCCAACGAATA
CCCTTCCCCAAAAGGTTTTGGTGAATCGCATGAAGGGTATACTCAATGAGCTGATTTCCCACAATCAGAGCGCATTTATCCCAGGGCGTTGCGTCGTGGACAATGACATC
CTAGGGTATGAATGCATTCACGCTCTGAAAGCAAAGAAGGTGGGGAGAACAGGGTGGGCCTCGCTTAAATTGGACATGAGCAAAGCCTACGATAGTGTAGAGTGGGTCTT
CCTGGAGAGGATGATGCTTAGAATGGAGTTTGCAATGGAGTGGGTGGAGCTTGTACTACGGTGCATATCATCGGTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGCAATGGAATAGTAAGGATAGAGCGTACCTCGCGAGGGCTAAAGTGATGCCGAAAGAGTTCCTCGCTCCACTGACCAGAGACAGTAAGGAGATCAGCCACTCGAG
TATCAAGATCCAACGTAGCTGGGGATCGTACCTTAACGCAGACATCATCTGGAATCCAGTTAGATCCATATACCCTGACTTTCTCCCCATTCCCAATCCTCCAACGAATA
CCCTTCCCCAAAAGGTTTTGGTGAATCGCATGAAGGGTATACTCAATGAGCTGATTTCCCACAATCAGAGCGCATTTATCCCAGGGCGTTGCGTCGTGGACAATGACATC
CTAGGGTATGAATGCATTCACGCTCTGAAAGCAAAGAAGGTGGGGAGAACAGGGTGGGCCTCGCTTAAATTGGACATGAGCAAAGCCTACGATAGTGTAGAGTGGGTCTT
CCTGGAGAGGATGATGCTTAGAATGGAGTTTGCAATGGAGTGGGTGGAGCTTGTACTACGGTGCATATCATCGGTCTAG
Protein sequenceShow/hide protein sequence
MSQWNSKDRAYLARAKVMPKEFLAPLTRDSKEISHSSIKIQRSWGSYLNADIIWNPVRSIYPDFLPIPNPPTNTLPQKVLVNRMKGILNELISHNQSAFIPGRCVVDNDI
LGYECIHALKAKKVGRTGWASLKLDMSKAYDSVEWVFLERMMLRMEFAMEWVELVLRCISSV