; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0038990 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0038990
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr2:32729868..32731367
RNA-Seq ExpressionLag0038990
SyntenyLag0038990
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO59710.1 reverse transcriptase [Corchorus capsularis]1.7e-5530.06Show/hide
Query:  NNAILDFECLHYIRQRKEGCEGWAALKLDMSKAYDRVEWFFLEKLMLALGLDVQVVDLIMRC--------------------------------------
        +N ++ FE LH ++ RK G +G+ ALKLDMSKAYDRVEW FLE +ML +G D + V+LIMRC                                      
Subjt:  NNAILDFECLHYIRQRKEGCEGWAALKLDMSKAYDRVEWFFLEKLMLALGLDVQVVDLIMRC--------------------------------------

Query:  -------------------------------------------AKQSEARWVSKSFSAYSILTGQEVNLAKSGVCFSPNVGEQARHAIASSLGVQLVGFH
                                                   A  +E+  V      Y   +GQ++N  KS V FS N+ +  R  + +   V      
Subjt:  -------------------------------------------AKQSEARWVSKSFSAYSILTGQEVNLAKSGVCFSPNVGEQARHAIASSLGVQLVGFH

Query:  DRYLGLPAIFLGKKALSQKYIKDQIWSSVQKWKHTWFLVRGKE---------------------------------------------------------
        ++YLGLP      K  +  +IK++I   +  W   W    G+E                                                         
Subjt:  DRYLGLPAIFLGKKALSQKYIKDQIWSSVQKWKHTWFLVRGKE---------------------------------------------------------

Query:  ---GGLGFRDLELFNQALLAKQGWRLIEKPNSLVGRVLKGKYFRHCSFMEAGKSGNGSFVWKSLMWGRNLLREGLRWLVGDGRSINIVRDRCLLREPS-L
           GG+GFRD+E FNQALLAKQGW+L+  P+SL+ RVLK +YF   +F+EA +    SF W+S++ GR+LL+ GLRW +G+GRS+ I+ DR + + P  +
Subjt:  ---GGLGFRDLELFNQALLAKQGWRLIEKPNSLVGRVLKGKYFRHCSFMEAGKSGNGSFVWKSLMWGRNLLREGLRWLVGDGRSINIVRDRCLLREPS-L

Query:  KVIHKGGISPDAKVESLL-SLDNSLNVNLIQEVFKEVDVEAILRIPRPMRCVEDKLIWHYEKNGLFSVRSGYKLACSLR
            +G I  D+ V  L+  +  S + +LI+ +F E + EAI++IP   R   D L+WH++  G++SV+SGY++ C+L+
Subjt:  KVIHKGGISPDAKVESLL-SLDNSLNVNLIQEVFKEVDVEAILRIPRPMRCVEDKLIWHYEKNGLFSVRSGYKLACSLR

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]2.8e-5534.26Show/hide
Query:  GWAALKLDMSKAYDRVEWFFLEKLMLALGLD-----------VQVVDLIMRCAKQSEARWVSKSFSAYSI------LTGQEVNLAK--------SGVCFS
        G+ +LKLDMSKAYDRVEW FLE +ML +G D           V  ++ ++R         +  +FS   I      L G +V++A+          +   
Subjt:  GWAALKLDMSKAYDRVEWFFLEKLMLALGLD-----------VQVVDLIMRCAKQSEARWVSKSFSAYSI------LTGQEVNLAK--------SGVCFS

Query:  PNVGEQARHAIASSLGVQLVGFHDRYLGLPAIFLGKKALSQKYIKDQIWSSVQKWKHTWFLVRGK-----------------------------------
        P   ++    I + L V +V    +YLGLP      + +   YIKD++W  +Q WK   F + GK                                   
Subjt:  PNVGEQARHAIASSLGVQLVGFHDRYLGLPAIFLGKKALSQKYIKDQIWSSVQKWKHTWFLVRGK-----------------------------------

Query:  -------------------------EGGLGFRDLELFNQALLAKQGWRLIEKPNSLVGRVLKGKYFRHCSFMEAGKSGNGSFVWKSLMWGRNLLREGLRW
                                 EGG+GFRDLELFN+ALLAKQ WR++  PNS++ RVLKG+YF+ CSFMEA  SGN S++W+S++WGR+LL++GLRW
Subjt:  -------------------------EGGLGFRDLELFNQALLAKQGWRLIEKPNSLVGRVLKGKYFRHCSFMEAGKSGNGSFVWKSLMWGRNLLREGLRW

Query:  LVGDGRSINIVRDRCLLREPSLKVIHKGGISPDAKVESLLS-LDNSLNVNLIQEVFKEVDVEAILRIPRPMRCVEDKLIWHYEKNGLFSVRSGYKLA
         +G+G S+ I  D  +  +P+LK++    +   ++V SL+   +     +++++ F   + + IL IP      ED+LIW+YEK G++SVRSGYK+A
Subjt:  LVGDGRSINIVRDRCLLREPSLKVIHKGGISPDAKVESLLS-LDNSLNVNLIQEVFKEVDVEAILRIPRPMRCVEDKLIWHYEKNGLFSVRSGYKLA

XP_024038343.1 uncharacterized protein LOC112097373 [Citrus clementina]1.7e-6032.26Show/hide
Query:  NNAILDFECLHYIRQRKEGCEGWAALKLDMSKAYDRVEWFFLEKLMLALGLDVQVVDLIMRC--------------------------------------
        +N I+ +ECLH IR  K    G  ALKLD+SKAYD++EW FLE+ M +LG     V LIM                                        
Subjt:  NNAILDFECLHYIRQRKEGCEGWAALKLDMSKAYDRVEWFFLEKLMLALGLDVQVVDLIMRC--------------------------------------

Query:  AKQSEARWVSKSFSAYSILTGQEVNLAKSGVCFSPNVGEQARHAIASSLGVQLVGFHDRYLGLPAIFLGKKALSQKYIKDQIWSSVQKWKHTWFLVRGKE
        A  ++ + + K F  YS  +GQ  N  KS +  + N+       I     + +V  H++YLGLP++   K++     IK +I + V  W+H +F   GKE
Subjt:  AKQSEARWVSKSFSAYSILTGQEVNLAKSGVCFSPNVGEQARHAIASSLGVQLVGFHDRYLGLPAIFLGKKALSQKYIKDQIWSSVQKWKHTWFLVRGKE

Query:  ------------------------------------------------------------GGLGFRDLELFNQALLAKQGWRLIEKPNSLVGRVLKGKYF
                                                                    GG+GFRD   FNQAL+AKQGWR+++ P+SLV ++L+ +YF
Subjt:  ------------------------------------------------------------GGLGFRDLELFNQALLAKQGWRLIEKPNSLVGRVLKGKYF

Query:  RHCSFMEAGKSGNGSFVWKSLMWGRNLLREGLRWLVGDGRSINIVRDRCLLREPSLKVIHKGGISPDAKVESLLSLDNSLNVNLIQEVFKEVDVEAILRI
        +H  FM A    N SF+W+S++WGR ++ +G +W +G+G+SI + ++  L R  + K I K  +  DA V  L++ D++ N  LI   F ++D EAI+RI
Subjt:  RHCSFMEAGKSGNGSFVWKSLMWGRNLLREGLRWLVGDGRSINIVRDRCLLREPSLKVIHKGGISPDAKVESLLSLDNSLNVNLIQEVFKEVDVEAILRI

Query:  PRPMRCVEDKLIWHYEKNGLFSVRSGYKLACSLR
          P R ++D++IWHY+K G +SV+SGY++A +L+
Subjt:  PRPMRCVEDKLIWHYEKNGLFSVRSGYKLACSLR

XP_030505522.1 uncharacterized protein LOC115720515 [Cannabis sativa]1.8e-5433.93Show/hide
Query:  NNAILDFECLHYIRQRKEGCEGWAALKLDMSKAYDRVEWFFLEKLMLALGLDVQVVDLIMRCAKQSEARWVSKSFSAYSILTGQEVNLAKSGVCFSPNVG
        +NA++ +E LH +R+   G + +AA+KLDMSKAYDRVEW F+E+++L LG + Q VD +M+C           S   Y+  +GQ +N  KS + FSPN  
Subjt:  NNAILDFECLHYIRQRKEGCEGWAALKLDMSKAYDRVEWFFLEKLMLALGLDVQVVDLIMRCAKQSEARWVSKSFSAYSILTGQEVNLAKSGVCFSPNVG

Query:  EQARHAIASSLGVQLVGFHDRYLGLPAIFLGKKALSQKYIKDQIWSSVQKWKHTWFLVRGKE--------------------------------------
        E  R    SSL + +    + YLGLP +    K    + IKD+IWS +  W    F   GKE                                      
Subjt:  EQARHAIASSLGVQLVGFHDRYLGLPAIFLGKKALSQKYIKDQIWSSVQKWKHTWFLVRGKE--------------------------------------

Query:  ----------------------GGLGFRDLELFNQALLAKQGWRLIEKPNSLVGRVLKGKYFRHCSFMEAGKSGNGSFVWKSLMWGRNLLREGLRWLVGD
                              GGLGFR    +NQALLAKQ WR++  P S++ +VLK +YF   SF+EA +S + S +W+ ++WG+ LL +GLR  +G+
Subjt:  ----------------------GGLGFRDLELFNQALLAKQGWRLIEKPNSLVGRVLKGKYFRHCSFMEAGKSGNGSFVWKSLMWGRNLLREGLRWLVGD

Query:  GRSINIVRDRCLLREPSLKVIHKGGISPDAKVESLLSLDNSLNVNLIQEVFKEVDVEAILRIPRPMRCVEDKLIWHYEKNGLFSVRSGYKLA
        G +  + +D  + R PS   I K  +     V  L+      N++LI +VF   D + IL IP  +   +D  +WH+  +G +SV+SGY LA
Subjt:  GRSINIVRDRCLLREPSLKVIHKGGISPDAKVESLLSLDNSLNVNLIQEVFKEVDVEAILRIPRPMRCVEDKLIWHYEKNGLFSVRSGYKLA

XP_042939444.1 uncharacterized protein LOC122274474 [Carya illinoinensis]1.8e-5734.48Show/hide
Query:  NNAILDFECLHYIRQRKEGCEGWAALKLDMSKAYDRVEWFFLEKLMLALGLDVQVVDLIMR-----CAKQSEARWVSKSF--SAYSILTGQEVNLAKSGV
        +N I+ FE LH ++ R +G EG+ ALKLDMSKAYDR+EW FL  +ML +G  V+ ++L+M+       K +   W    F  ++Y   +GQ +N  K+ +
Subjt:  NNAILDFECLHYIRQRKEGCEGWAALKLDMSKAYDRVEWFFLEKLMLALGLDVQVVDLIMR-----CAKQSEARWVSKSF--SAYSILTGQEVNLAKSGV

Query:  CFSPNVGEQARHAIASSLGVQLVGFHDRYLGLPAIFLGKKALSQKYIKDQIWSSVQKWKHTWFLVRGKE-------------------------------
         FS N  EQ +  + S  G++    +++YLGLPA+    +  S K I D++ + +  WK       GKE                               
Subjt:  CFSPNVGEQARHAIASSLGVQLVGFHDRYLGLPAIFLGKKALSQKYIKDQIWSSVQKWKHTWFLVRGKE-------------------------------

Query:  -----------------------------GGLGFRDLELFNQALLAKQGWRLIEKPNSLVGRVLKGKYFRHCSFMEAGKSGNGSFVWKSLMWGRNLLREG
                                     GGLG RD E FN+ALLAKQGWR+I  PNSL  RVLK KYF+  +F++  K  N SF+W+S +  R+LL+EG
Subjt:  -----------------------------GGLGFRDLELFNQALLAKQGWRLIEKPNSLVGRVLKGKYFRHCSFMEAGKSGNGSFVWKSLMWGRNLLREG

Query:  LRWLVGDGRSINIVRDRCLLREPSLKVIHKGGISP-DAKVESLLS-LDNSLNVNLIQEVFKEVDVEAILRIPRPMRCVEDKLIWHYEKNGLFSVRSGYKL
        L W VGDG+SI++  D+ L +  S K+       P D KV  L+    N  N  L++ V    + E + RIP       DKL+W     G F+V+S Y L
Subjt:  LRWLVGDGRSINIVRDRCLLREPSLKVIHKGGISP-DAKVESLLS-LDNSLNVNLIQEVFKEVDVEAILRIPRPMRCVEDKLIWHYEKNGLFSVRSGYKL

Query:  ACSLRR
           L +
Subjt:  ACSLRR

TrEMBL top hitse value%identityAlignment
A0A1R3GNW3 Reverse transcriptase8.0e-5630.06Show/hide
Query:  NNAILDFECLHYIRQRKEGCEGWAALKLDMSKAYDRVEWFFLEKLMLALGLDVQVVDLIMRC--------------------------------------
        +N ++ FE LH ++ RK G +G+ ALKLDMSKAYDRVEW FLE +ML +G D + V+LIMRC                                      
Subjt:  NNAILDFECLHYIRQRKEGCEGWAALKLDMSKAYDRVEWFFLEKLMLALGLDVQVVDLIMRC--------------------------------------

Query:  -------------------------------------------AKQSEARWVSKSFSAYSILTGQEVNLAKSGVCFSPNVGEQARHAIASSLGVQLVGFH
                                                   A  +E+  V      Y   +GQ++N  KS V FS N+ +  R  + +   V      
Subjt:  -------------------------------------------AKQSEARWVSKSFSAYSILTGQEVNLAKSGVCFSPNVGEQARHAIASSLGVQLVGFH

Query:  DRYLGLPAIFLGKKALSQKYIKDQIWSSVQKWKHTWFLVRGKE---------------------------------------------------------
        ++YLGLP      K  +  +IK++I   +  W   W    G+E                                                         
Subjt:  DRYLGLPAIFLGKKALSQKYIKDQIWSSVQKWKHTWFLVRGKE---------------------------------------------------------

Query:  ---GGLGFRDLELFNQALLAKQGWRLIEKPNSLVGRVLKGKYFRHCSFMEAGKSGNGSFVWKSLMWGRNLLREGLRWLVGDGRSINIVRDRCLLREPS-L
           GG+GFRD+E FNQALLAKQGW+L+  P+SL+ RVLK +YF   +F+EA +    SF W+S++ GR+LL+ GLRW +G+GRS+ I+ DR + + P  +
Subjt:  ---GGLGFRDLELFNQALLAKQGWRLIEKPNSLVGRVLKGKYFRHCSFMEAGKSGNGSFVWKSLMWGRNLLREGLRWLVGDGRSINIVRDRCLLREPS-L

Query:  KVIHKGGISPDAKVESLL-SLDNSLNVNLIQEVFKEVDVEAILRIPRPMRCVEDKLIWHYEKNGLFSVRSGYKLACSLR
            +G I  D+ V  L+  +  S + +LI+ +F E + EAI++IP   R   D L+WH++  G++SV+SGY++ C+L+
Subjt:  KVIHKGGISPDAKVESLL-SLDNSLNVNLIQEVFKEVDVEAILRIPRPMRCVEDKLIWHYEKNGLFSVRSGYKLACSLR

A0A2N9EXN0 Uncharacterized protein3.3e-5737.86Show/hide
Query:  NNAILDFECLHYIRQRKEGCEGWAALKLDMSKAYDRVEWFFLEKLMLALGLDVQVVDLIMRC----------------AKQSEARWVSKSFSAYSILTGQ
        +N I+ FE +HY++  ++G     A KLDMSKAYDRVEW +L+ +ML LG   + V LIM C                A  +E   +    + Y+  +GQ
Subjt:  NNAILDFECLHYIRQRKEGCEGWAALKLDMSKAYDRVEWFFLEKLMLALGLDVQVVDLIMRC----------------AKQSEARWVSKSFSAYSILTGQ

Query:  EVNLAKSGVCFSPNVGEQARHAIASSLGVQLVGFHDRYLGLPAIFLGKKALSQKYIK------------------------DQIWSSVQK------WKHT
         VN  K+ + FS N  +  R  I S  G       ++YLGLP +  G++ L +  I+                         + W   ++      W + 
Subjt:  EVNLAKSGVCFSPNVGEQARHAIASSLGVQLVGFHDRYLGLPAIFLGKKALSQKYIK------------------------DQIWSSVQK------WKHT

Query:  WFLVRGK-EGGLGFRDLELFNQALLAKQGWRLIEKPNSLVGRVLKGKYFRHCSFMEAGKSGNGSFVWKSLMWGRNLLREGLRWLVGDGRSINIVRDRCLL
          L++ K EGGLGFRDL+LFN+ALLA+QGWRLI +P+SL+ RVLK KYF H SF+EAG  GN S++W+S+   + +L+ GLRW VG G  I I +DR L 
Subjt:  WFLVRGK-EGGLGFRDLELFNQALLAKQGWRLIEKPNSLVGRVLKGKYFRHCSFMEAGKSGNGSFVWKSLMWGRNLLREGLRWLVGDGRSINIVRDRCLL

Query:  REPSLKVIHK-GGISPDAKVESLLSLDN-SLNVNLIQEVFKEVDVEAILRIPRPMRCVEDKLIWHYEKNGLFSVRSGYKLACS
           + KVI    G   +A V+ L+  ++ + N+ L+  +F  +DVE I  IP   R   D LIW   K G FSV+S YKL  S
Subjt:  REPSLKVIHK-GGISPDAKVESLLSLDN-SLNVNLIQEVFKEVDVEAILRIPRPMRCVEDKLIWHYEKNGLFSVRSGYKLACS

A0A2N9ID42 CCHC-type domain-containing protein7.3e-5734.71Show/hide
Query:  NNAILDFECLHYIRQRKEGCEGWAALKLDMSKAYDRVEWFFLEKLMLALGLDVQVVDLIMRC----------------AKQSEARWVSKSFSAYSILTGQ
        +N I+ FE +HY++  ++G     A KLDMSKAYD+VEW +L+ +ML +G  +  V LIM C                A  +E R +    + Y+  +GQ
Subjt:  NNAILDFECLHYIRQRKEGCEGWAALKLDMSKAYDRVEWFFLEKLMLALGLDVQVVDLIMRC----------------AKQSEARWVSKSFSAYSILTGQ

Query:  EVNLAKSGVCFSPNVGEQARHAIASSLGVQLVGFHDRYLGLPAIFLGKKALSQKYIKDQIWSSVQKWKHT------------------------------
         VN  K+ + FS N  +    +I S  G   +   ++YLGLP +    K  +   IKD++W  +Q WK                                
Subjt:  EVNLAKSGVCFSPNVGEQARHAIASSLGVQLVGFHDRYLGLPAIFLGKKALSQKYIKDQIWSSVQKWKHT------------------------------

Query:  -------------WFLVRGKE-----------------GGLGFRDLELFNQALLAKQGWRLIEKPNSLVGRVLKGKYFRHCSFMEAGKSGNGSFVWKSLM
                     W+  RG E                 GG+GFRDL+LFN+ALLA+QGWRL+ +P SL+ RVLK KYF + SF+EA   GN S++W S+ 
Subjt:  -------------WFLVRGKE-----------------GGLGFRDLELFNQALLAKQGWRLIEKPNSLVGRVLKGKYFRHCSFMEAGKSGNGSFVWKSLM

Query:  WGRNLLREGLRWLVGDGRSINIVRDRCLLREPSLKVIH-KGGISPDAKVESLLSLDN-SLNVNLIQEVFKEVDVEAILRIPRPMRCVEDKLIWHYEKNGL
          + +L  G RW VG G  I I  DR L    + +VI    G+ P+A V++L+ +D+ S N+ L+  +F   DVE+IL IP   R   D LIW+  K G 
Subjt:  WGRNLLREGLRWLVGDGRSINIVRDRCLLREPSLKVIH-KGGISPDAKVESLLSLDN-SLNVNLIQEVFKEVDVEAILRIPRPMRCVEDKLIWHYEKNGL

Query:  FSVRSGYKLACS
        FSV+S Y++  S
Subjt:  FSVRSGYKLACS

A0A803PD72 Uncharacterized protein2.2e-6137.64Show/hide
Query:  NNAILDFECLHYIRQRKEGCEGWAALKLDMSKAYDRVEWFFLEKLMLALGLDVQVVDLIMRCAK--------------------QSEARWVSKSFSAYSI
        +N ++ FE +H I+ +  G +G AA+KLDMSKA+DRVEW F++ +M  +G   +   LIM C                      +S    + +    Y  
Subjt:  NNAILDFECLHYIRQRKEGCEGWAALKLDMSKAYDRVEWFFLEKLMLALGLDVQVVDLIMRCAK--------------------QSEARWVSKSFSAYSI

Query:  LTGQEVNLAKSGVCFSPNVGEQARHAIASSLGVQLVGFHDRYLGLPAIFLGKKALSQKYIKDQIWSSVQKWKHTWFLVRGK-EGGLGFRDLELFNQALLA
         +GQ +N  KS + FSPN    A+      L + +   H++YLGLPA     K      IK+++W  ++ W    F +  K +GG+GFR    +NQALLA
Subjt:  LTGQEVNLAKSGVCFSPNVGEQARHAIASSLGVQLVGFHDRYLGLPAIFLGKKALSQKYIKDQIWSSVQKWKHTWFLVRGK-EGGLGFRDLELFNQALLA

Query:  KQGWRLIEKPNSLVGRVLKGKYFRHCSFMEAGKSGNGSFVWKSLMWGRNLLREGLRWLVGDGRSINIVRDRCLLREPSLKVIHKGGISPDAKVESLLSLD
        KQ WRL++ P+SL+ R+LK +YF H SF+EA    + SF W+ ++ GR LL+ GLRW VG+GR IN V D  +L     + IH  G  P+  V +L++ D
Subjt:  KQGWRLIEKPNSLVGRVLKGKYFRHCSFMEAGKSGNGSFVWKSLMWGRNLLREGLRWLVGDGRSINIVRDRCLLREPSLKVIHKGGISPDAKVESLLSLD

Query:  NSLNVNLIQEVFKEVDVEAILRIPRPMRCVEDKLIWHYEKNGLFSVRSGYKLACSL
           N  L+ E F  +DV+ IL IP       D LIWH+  +G+++V SGY  A SL
Subjt:  NSLNVNLIQEVFKEVDVEAILRIPRPMRCVEDKLIWHYEKNGLFSVRSGYKLACSL

A0A803PI64 Uncharacterized protein6.6e-5836.52Show/hide
Query:  NNAILDFECLHYIRQRKEGCEGWAALKLDMSKAYDRVEWFFLEKLMLALGLDVQVVDLIMRCA-------------------------------------
        +NAI+ +E LH +R+ +    G  ALKLDM+KAYDRVEW FL  +M  LG     VD IMRC                                      
Subjt:  NNAILDFECLHYIRQRKEGCEGWAALKLDMSKAYDRVEWFFLEKLMLALGLDVQVVDLIMRCA-------------------------------------

Query:  ----------KQSEARW-----------VSKSFSA-----------------------YSILTGQEVNLAKSGVCFSPNVGEQARHAIASSLGVQLVGFH
                  ++S  R            VS  F A                       Y+  +GQ VN  KS  CF  NV  + R  +A  +GV+ V  H
Subjt:  ----------KQSEARW-----------VSKSFSA-----------------------YSILTGQEVNLAKSGVCFSPNVGEQARHAIASSLGVQLVGFH

Query:  DRYLGLPAIFLGKKALSQKYIKDQIWSSVQK--WKHTWFLVRGKE-GGLGFRDLELFNQALLAKQGWRLIEKPNSLVGRVLKGKYFRHCSFMEAGKSGNG
         +YLGLP+ F+G+   ++K   D+I +  +K  W    +L R K+ GGLGFRDL +FNQALLAKQ WR I  P  L  RVLK  YF H  F+EAG   N 
Subjt:  DRYLGLPAIFLGKKALSQKYIKDQIWSSVQK--WKHTWFLVRGKE-GGLGFRDLELFNQALLAKQGWRLIEKPNSLVGRVLKGKYFRHCSFMEAGKSGNG

Query:  SFVWKSLMWGRNLLREGLRWLVGDGRSINIVRDRCLLREPSLKVIHKGGISPDAKVESLLSLDNSLNVNLIQEVFKEVDVEAILRIPRPMRCVEDKLIWH
        SFVW+SL+WG+ L+ +G RW VG+G S+ ++ D  L R  + KV  +  +  +  V  L   D   + + I+ VF  +D E IL IP      EDK++ H
Subjt:  SFVWKSLMWGRNLLREGLRWLVGDGRSINIVRDRCLLREPSLKVIHKGGISPDAKVESLLSLDNSLNVNLIQEVFKEVDVEAILRIPRPMRCVEDKLIWH

Query:  YEKNGLFSVRSGYKLACSL
        Y KNG ++V+SGY++A SL
Subjt:  YEKNGLFSVRSGYKLACSL

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657502.1e-1330.98Show/hide
Query:  KEGGLGFRDLELFNQALLAKQGWRLIEKPNSLVGRVLKGKYFRHCSFMEAGK----SGNGSFVWKSLMWG-RNLLREGLRWLVGDGRSINIVRDRCLLRE
        KEGGLG R  +  N+AL++K GWRL+++ NSL   VL+ KY  H   +   +     G+ S  W+S+  G R+++  G+ W+ GDG+ I    DR +  +
Subjt:  KEGGLGFRDLELFNQALLAKQGWRLIEKPNSLVGRVLKGKYFRHCSFMEAGK----SGNGSFVWKSLMWG-RNLLREGLRWLVGDGRSINIVRDRCLLRE

Query:  PSLKVIHKGGISPDAKVESLLSLDNSLNVNLIQEVFKEVDVEAILRIPRPMRCV--------EDKLIWHYEKNGLFSVRSGYKL
        P L++    G  P    +++++ D  L +      F ++D          +R V         D+L W + ++G FSVRS Y++
Subjt:  PSLKVIHKGGISPDAKVESLLSLDNSLNVNLIQEVFKEVDVEAILRIPRPMRCV--------EDKLIWHYEKNGLFSVRSGYKL

P93295 Uncharacterized mitochondrial protein AtMg003101.2e-1944.63Show/hide
Query:  WSSVQ-KWKHTWF----LVRGKE--GGLGFRDLELFNQALLAKQGWRLIEKPNSLVGRVLKGKYFRHCSFMEAGKSGNGSFVWKSLMWGRNLLREGLRWL
        WSS + K K +W     L + KE  GGLGFRDL  FNQALLAKQ +R+I +P++L+ R+L+ +YF H S ME       S+ W+S++ GR LL  GL   
Subjt:  WSSVQ-KWKHTWF----LVRGKE--GGLGFRDLELFNQALLAKQGWRLIEKPNSLVGRVLKGKYFRHCSFMEAGKSGNGSFVWKSLMWGRNLLREGLRWL

Query:  VGDGRSINIVRDRCLLREPSL
        +GDG    +  DR ++ E  L
Subjt:  VGDGRSINIVRDRCLLREPSL

Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein8.6e-1029.71Show/hide
Query:  LKGKYFRHCSFMEAGKSGNGSFVWKSLMWGRNLLREGLRWLVGDGRSINIVRDRCLLREPSLKVIHKGGISPDAKVESLLSLDNSL---NVNLIQEVFKE
        +K +YF+  S ++A      S+ W SL+ G  LL++G R L+GDG++I I  D  +   P  + ++      +  + +L     S    + + I +   +
Subjt:  LKGKYFRHCSFMEAGKSGNGSFVWKSLMWGRNLLREGLRWLVGDGRSINIVRDRCLLREPSLKVIHKGGISPDAKVESLLSLDNSL---NVNLIQEVFKE

Query:  VDVEAILRIPRPMRCVEDKLIWHYEKNGLFSVRSGYKL
         D   I RI        DK+IW+Y   G ++VRSGY L
Subjt:  VDVEAILRIPRPMRCVEDKLIWHYEKNGLFSVRSGYKL

AT4G20520.1 RNA binding;RNA-directed DNA polymerases6.8e-0742.37Show/hide
Query:  TFIP----FNNAILDFECLHYIRQRKEGCEGWAALKLDMSKAYDRVEWFFLEKLMLALG
        +FIP     +N +   E +H +R RK+G +GW  LKLD+ KAYDR+ W +LE  +++ G
Subjt:  TFIP----FNNAILDFECLHYIRQRKEGCEGWAALKLDMSKAYDRVEWFFLEKLMLALG

AT4G29090.1 Ribonuclease H-like superfamily protein3.2e-2534.46Show/hide
Query:  EGGLGFRDLELFNQALLAKQGWRLIEKPNSLVGRVLKGKYFRHCSFMEAGKSGNGSFVWKSLMWGRNLLREGLRWLVGDGRSINIVRDRCLLREPSLKVI
        EGG+GF+D+E FN ALL KQ WR++ +P SL+ +V K +YF     + A      SFVWKS+   + +LR+G R +VG+G  I I R + L  +P+   +
Subjt:  EGGLGFRDLELFNQALLAKQGWRLIEKPNSLVGRVLKGKYFRHCSFMEAGKSGNGSFVWKSLMWGRNLLREGLRWLVGDGRSINIVRDRCLLREPSLKVI

Query:  HKGGISPD--AKVESLLSLDNSLN-------VNLIQEVFKEVDVEAILRIPRPMRCVEDKLIWHYEKNGLFSVRSGY
            + P   A V S+L + + ++        ++I+ +F EV+ + I  +    R + D   W Y  +G ++V+SGY
Subjt:  HKGGISPD--AKVESLLSLDNSLN-------VNLIQEVFKEVDVEAILRIPRPMRCVEDKLIWHYEKNGLFSVRSGY

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein8.3e-2144.63Show/hide
Query:  WSSVQ-KWKHTWF----LVRGKE--GGLGFRDLELFNQALLAKQGWRLIEKPNSLVGRVLKGKYFRHCSFMEAGKSGNGSFVWKSLMWGRNLLREGLRWL
        WSS + K K +W     L + KE  GGLGFRDL  FNQALLAKQ +R+I +P++L+ R+L+ +YF H S ME       S+ W+S++ GR LL  GL   
Subjt:  WSSVQ-KWKHTWF----LVRGKE--GGLGFRDLELFNQALLAKQGWRLIEKPNSLVGRVLKGKYFRHCSFMEAGKSGNGSFVWKSLMWGRNLLREGLRWL

Query:  VGDGRSINIVRDRCLLREPSL
        +GDG    +  DR ++ E  L
Subjt:  VGDGRSINIVRDRCLLREPSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCTTCCGCTGCGTGGGGACTTTTATTCCCTTCAATAATGCTATTCTAGACTTTGAGTGCCTTCACTATATACGACAGAGGAAGGAAGGGTGTGAAGGGTGG
GCGGCTCTGAAGTTAGATATGAGTAAGGCCTACGATAGGGTGGAGTGGTTCTTTTTAGAAAAGCTTATGCTTGCGTTGGGTTTGGATGTGCAGGTGGTGGATCTT
ATAATGAGGTGCGCCAAGCAGAGTGAGGCCAGGTGGGTGTCTAAAAGTTTTAGTGCATATTCCATCCTCACAGGGCAGGAAGTGAACCTTGCGAAGTCTGGTGTG
TGTTTTAGCCCGAATGTAGGGGAGCAGGCTAGACATGCCATTGCTTCCTCTTTGGGAGTTCAGCTGGTGGGTTTCCATGATCGTTATTTGGGCCTGCCAGCTATC
TTCCTTGGGAAGAAAGCCCTTTCTCAGAAGTATATCAAGGACCAAATTTGGTCCAGCGTCCAGAAGTGGAAGCACACATGGTTTTTGGTTAGAGGGAAGGAGGGG
GGTCTTGGATTTAGAGATCTTGAGCTATTTAATCAGGCTCTCTTGGCAAAACAAGGATGGAGACTGATTGAGAAGCCGAATTCTTTAGTGGGGAGGGTGTTGAAG
GGGAAATATTTTCGCCATTGCTCTTTTATGGAGGCAGGGAAGAGTGGAAATGGGTCTTTTGTGTGGAAAAGCTTGATGTGGGGGAGAAACCTCTTAAGGGAAGGG
TTGAGATGGCTTGTTGGGGATGGCAGGTCCATTAATATTGTGCGGGATAGGTGCCTTTTAAGAGAACCTTCGCTGAAAGTGATTCACAAAGGGGGTATTAGCCCT
GATGCTAAGGTGGAAAGCTTATTAAGTTTGGATAACTCTTTGAATGTGAATCTTATCCAAGAGGTATTCAAGGAGGTGGATGTTGAGGCTATTCTCAGGATACCT
AGGCCAATGAGGTGTGTAGAAGACAAGCTCATATGGCACTATGAGAAGAATGGCTTGTTCTCTGTGAGGAGTGGGTACAAGTTGGCATGTTCATTGAGGAGAATG
TGGGCAGCTCTGATCAAGAGAGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGCTTCCGCTGCGTGGGGACTTTTATTCCCTTCAATAATGCTATTCTAGACTTTGAGTGCCTTCACTATATACGACAGAGGAAGGAAGGGTGTGAAGGGTGG
GCGGCTCTGAAGTTAGATATGAGTAAGGCCTACGATAGGGTGGAGTGGTTCTTTTTAGAAAAGCTTATGCTTGCGTTGGGTTTGGATGTGCAGGTGGTGGATCTT
ATAATGAGGTGCGCCAAGCAGAGTGAGGCCAGGTGGGTGTCTAAAAGTTTTAGTGCATATTCCATCCTCACAGGGCAGGAAGTGAACCTTGCGAAGTCTGGTGTG
TGTTTTAGCCCGAATGTAGGGGAGCAGGCTAGACATGCCATTGCTTCCTCTTTGGGAGTTCAGCTGGTGGGTTTCCATGATCGTTATTTGGGCCTGCCAGCTATC
TTCCTTGGGAAGAAAGCCCTTTCTCAGAAGTATATCAAGGACCAAATTTGGTCCAGCGTCCAGAAGTGGAAGCACACATGGTTTTTGGTTAGAGGGAAGGAGGGG
GGTCTTGGATTTAGAGATCTTGAGCTATTTAATCAGGCTCTCTTGGCAAAACAAGGATGGAGACTGATTGAGAAGCCGAATTCTTTAGTGGGGAGGGTGTTGAAG
GGGAAATATTTTCGCCATTGCTCTTTTATGGAGGCAGGGAAGAGTGGAAATGGGTCTTTTGTGTGGAAAAGCTTGATGTGGGGGAGAAACCTCTTAAGGGAAGGG
TTGAGATGGCTTGTTGGGGATGGCAGGTCCATTAATATTGTGCGGGATAGGTGCCTTTTAAGAGAACCTTCGCTGAAAGTGATTCACAAAGGGGGTATTAGCCCT
GATGCTAAGGTGGAAAGCTTATTAAGTTTGGATAACTCTTTGAATGTGAATCTTATCCAAGAGGTATTCAAGGAGGTGGATGTTGAGGCTATTCTCAGGATACCT
AGGCCAATGAGGTGTGTAGAAGACAAGCTCATATGGCACTATGAGAAGAATGGCTTGTTCTCTGTGAGGAGTGGGTACAAGTTGGCATGTTCATTGAGGAGAATG
TGGGCAGCTCTGATCAAGAGAGAGTAA
Protein sequenceShow/hide protein sequence
MRFRCVGTFIPFNNAILDFECLHYIRQRKEGCEGWAALKLDMSKAYDRVEWFFLEKLMLALGLDVQVVDLIMRCAKQSEARWVSKSFSAYSILTGQEVNLAKSGV
CFSPNVGEQARHAIASSLGVQLVGFHDRYLGLPAIFLGKKALSQKYIKDQIWSSVQKWKHTWFLVRGKEGGLGFRDLELFNQALLAKQGWRLIEKPNSLVGRVLK
GKYFRHCSFMEAGKSGNGSFVWKSLMWGRNLLREGLRWLVGDGRSINIVRDRCLLREPSLKVIHKGGISPDAKVESLLSLDNSLNVNLIQEVFKEVDVEAILRIP
RPMRCVEDKLIWHYEKNGLFSVRSGYKLACSLRRMWAALIKRE