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Lag0039000 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039000
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr2:33258976..33259335
RNA-Seq ExpressionLag0039000
SyntenyLag0039000
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU41525.1 hypothetical protein TSUD_140560 [Trifolium subterraneum]7.1e-1141.98Show/hide
Query:  SMVEQLGNAIGRFEEYDNGRGFDLKESLRIRVTLDITKPLRRGIKVKPDEPLGSVWTLIRYKKLPEICTLCGRIGHQSKEC
        +M ++LGN +G FEE D          LR++ +LD+ KPL+RG K+K  +   ++W   +Y++LP  C  CG+IGHQ KEC
Subjt:  SMVEQLGNAIGRFEEYDNGRGFDLKESLRIRVTLDITKPLRRGIKVKPDEPLGSVWTLIRYKKLPEICTLCGRIGHQSKEC

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]4.9e-1245.24Show/hide
Query:  NLSMVEQLGNAIGRFEEYD-NGRGFDLKESLRIRVTLDITKPLRRGIKVKPDEPLGSVWTLIRYKKLPEICTLCGRIGHQSKEC
        N +M  +LGNAIG FE+ + N   F     LR+RV  D+ KPL RGIK+  D P+G  W  I+Y++LP+    CGR+ H  K+C
Subjt:  NLSMVEQLGNAIGRFEEYD-NGRGFDLKESLRIRVTLDITKPLRRGIKVKPDEPLGSVWTLIRYKKLPEICTLCGRIGHQSKEC

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]3.2e-1953.19Show/hide
Query:  MDLYNLSMVEQLGNAIGRFEEYD-NGRGFDLKESLRIRVTLDITKPLRRGIKVKPDEPLGSVWTLIRYKKLPEICTLCGRIGHQSKECGSFYLA
        M   N +M  +LGNAIG F + D N +GF    SLRIRV +DITKPLRRGIK+  D P+G  W  I+Y++LP+ C  CG IGH S +C + YLA
Subjt:  MDLYNLSMVEQLGNAIGRFEEYD-NGRGFDLKESLRIRVTLDITKPLRRGIKVKPDEPLGSVWTLIRYKKLPEICTLCGRIGHQSKECGSFYLA

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]5.4e-1148.1Show/hide
Query:  MVEQLGNAIGRFEEYD-NGRGFDLKESLRIRVTLDITKPLRRGIKVKPDEPLGSVWTLIRYKKLPEICTLCGRIGHQSK
        M  +LGNA+G FEE D +    D   +LR+RV LDI+KPLRRGIK+  D P+G  W  I+Y++LP+ C  CG    + K
Subjt:  MVEQLGNAIGRFEEYD-NGRGFDLKESLRIRVTLDITKPLRRGIKVKPDEPLGSVWTLIRYKKLPEICTLCGRIGHQSK

XP_030963679.1 uncharacterized protein LOC115984821 [Quercus lobata]5.4e-1149.37Show/hide
Query:  EQLGNAIGRFEEYD-NGRGFDLKESLRIRVTLDITKPLRRGIKVKPDEPLGSVWTLIRYKKLPEICTLCGRIGHQSKEC
        E +G  +G+ E+ D NG+GF L   LRIRV LDIT PL RG KV+  E  G  W  ++Y++LP  C LCGR+ H  K+C
Subjt:  EQLGNAIGRFEEYD-NGRGFDLKESLRIRVTLDITKPLRRGIKVKPDEPLGSVWTLIRYKKLPEICTLCGRIGHQSKEC

TrEMBL top hitse value%identityAlignment
A0A2K3JRR7 CCHC-type domain-containing protein5.8e-1145Show/hide
Query:  MVEQLGNAIGRFEEYDNGRGFDLKESLRIRVTLDITKPLRRGIKVKPDEPLGSVWTLIRYKKLPEICTLCGRIGHQSKEC
        M ++LGN IG+FEE D          LR++V++D+TKPL+RG  +K  +   S+    +Y++LP  C +CGRIGHQ KEC
Subjt:  MVEQLGNAIGRFEEYDNGRGFDLKESLRIRVTLDITKPLRRGIKVKPDEPLGSVWTLIRYKKLPEICTLCGRIGHQSKEC

A0A2Z6NZV1 Uncharacterized protein3.4e-1141.98Show/hide
Query:  SMVEQLGNAIGRFEEYDNGRGFDLKESLRIRVTLDITKPLRRGIKVKPDEPLGSVWTLIRYKKLPEICTLCGRIGHQSKEC
        +M ++LGN +G FEE D          LR++ +LD+ KPL+RG K+K  +   ++W   +Y++LP  C  CG+IGHQ KEC
Subjt:  SMVEQLGNAIGRFEEYDNGRGFDLKESLRIRVTLDITKPLRRGIKVKPDEPLGSVWTLIRYKKLPEICTLCGRIGHQSKEC

A0A6J1BSZ1 uncharacterized protein LOC1110054812.4e-1245.24Show/hide
Query:  NLSMVEQLGNAIGRFEEYD-NGRGFDLKESLRIRVTLDITKPLRRGIKVKPDEPLGSVWTLIRYKKLPEICTLCGRIGHQSKEC
        N +M  +LGNAIG FE+ + N   F     LR+RV  D+ KPL RGIK+  D P+G  W  I+Y++LP+    CGR+ H  K+C
Subjt:  NLSMVEQLGNAIGRFEEYD-NGRGFDLKESLRIRVTLDITKPLRRGIKVKPDEPLGSVWTLIRYKKLPEICTLCGRIGHQSKEC

A0A6J1DU55 uncharacterized protein LOC1110231351.5e-1953.19Show/hide
Query:  MDLYNLSMVEQLGNAIGRFEEYD-NGRGFDLKESLRIRVTLDITKPLRRGIKVKPDEPLGSVWTLIRYKKLPEICTLCGRIGHQSKECGSFYLA
        M   N +M  +LGNAIG F + D N +GF    SLRIRV +DITKPLRRGIK+  D P+G  W  I+Y++LP+ C  CG IGH S +C + YLA
Subjt:  MDLYNLSMVEQLGNAIGRFEEYD-NGRGFDLKESLRIRVTLDITKPLRRGIKVKPDEPLGSVWTLIRYKKLPEICTLCGRIGHQSKECGSFYLA

A0A6J1DX30 uncharacterized protein LOC1110248742.6e-1148.1Show/hide
Query:  MVEQLGNAIGRFEEYD-NGRGFDLKESLRIRVTLDITKPLRRGIKVKPDEPLGSVWTLIRYKKLPEICTLCGRIGHQSK
        M  +LGNA+G FEE D +    D   +LR+RV LDI+KPLRRGIK+  D P+G  W  I+Y++LP+ C  CG    + K
Subjt:  MVEQLGNAIGRFEEYD-NGRGFDLKESLRIRVTLDITKPLRRGIKVKPDEPLGSVWTLIRYKKLPEICTLCGRIGHQSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCTTTACAATCTCTCAATGGTGGAGCAACTTGGCAATGCCATTGGGCGATTTGAAGAGTACGATAATGGTCGGGGATTCGACTTGAAAGAGAGCCTCCGCATTCG
AGTTACTCTGGACATAACCAAACCTTTGCGTCGAGGTATTAAGGTGAAGCCCGATGAGCCGTTAGGAAGTGTTTGGACTCTGATCCGATACAAGAAACTACCGGAAATTT
GCACTTTATGTGGCCGTATAGGACACCAGTCAAAGGAGTGTGGTTCTTTTTATCTAGCAGATAACCCTCATCCCAAAAACATCAGTATGGGATGTGGATGCAATTTACAG
GAAGGAATTCGAGTTATTCAAGTCATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACCTTTACAATCTCTCAATGGTGGAGCAACTTGGCAATGCCATTGGGCGATTTGAAGAGTACGATAATGGTCGGGGATTCGACTTGAAAGAGAGCCTCCGCATTCG
AGTTACTCTGGACATAACCAAACCTTTGCGTCGAGGTATTAAGGTGAAGCCCGATGAGCCGTTAGGAAGTGTTTGGACTCTGATCCGATACAAGAAACTACCGGAAATTT
GCACTTTATGTGGCCGTATAGGACACCAGTCAAAGGAGTGTGGTTCTTTTTATCTAGCAGATAACCCTCATCCCAAAAACATCAGTATGGGATGTGGATGCAATTTACAG
GAAGGAATTCGAGTTATTCAAGTCATCTAA
Protein sequenceShow/hide protein sequence
MDLYNLSMVEQLGNAIGRFEEYDNGRGFDLKESLRIRVTLDITKPLRRGIKVKPDEPLGSVWTLIRYKKLPEICTLCGRIGHQSKECGSFYLADNPHPKNISMGCGCNLQ
EGIRVIQVI