CuGenDBv2

Gene ID	Lag0039018
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Pentatricopeptide repeat-containing protein
Genome location	chr2:33779942..33780738
RNA-Seq Expression	Lag0039018
Synteny	Lag0039018
Gene Ontology terms	GO:0009451 - RNA modification (biological process) GO:0043231 - intracellular membrane-bounded organelle (cellular component) GO:0003723 - RNA binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6593716.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-11

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Query:  VHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVFDESLESVKSGSVLIW
        +H GILKFGLEFDSFV V LV+MYVK +DLGSALKVFDES + +K G+VLIW
Subjt:  VHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVFDESLESVKSGSVLIW

XP_004139010.1 pentatricopeptide repeat-containing protein At1g04840 [Cucumis sativus]

3.5e-14

84.62

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Query:  VHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVFDESLESVKSGSVLIW
        +HCGILKFGLEFDSFV V LV+MYVK E+LGSALKVFDES ESVK+GSVLIW
Subjt:  VHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVFDESLESVKSGSVLIW

XP_008457226.1 PREDICTED: pentatricopeptide repeat-containing protein At1g04840 [Cucumis melo]

1.5e-12

80.77

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Query:  VHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVFDESLESVKSGSVLIW
        +HCGILKFGL FDSFV V LV+MYVK  +LGSALKVFDES ESVK+GSVLIW
Subjt:  VHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVFDESLESVKSGSVLIW

XP_022964045.1 pentatricopeptide repeat-containing protein At1g04840 [Cucurbita moschata]

1.2e-11

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Query:  VHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVFDESLESVKSGSVLIW
        +H GILKFGLEFDSFV V LV+MYVK +DLGSALKVFDES + +K G+VLIW
Subjt:  VHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVFDESLESVKSGSVLIW

XP_038876300.1 pentatricopeptide repeat-containing protein At1g04840 [Benincasa hispida]

2.2e-13

78.85

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Query:  VHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVFDESLESVKSGSVLIW
        +HCG+LKFGL+FDSFV V LV+MYVK E+LGSALKVFDES +SVK+GSVLIW
Subjt:  VHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVFDESLESVKSGSVLIW

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LI86 DYW_deaminase domain-containing protein

1.7e-14

84.62

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Query:  VHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVFDESLESVKSGSVLIW
        +HCGILKFGLEFDSFV V LV+MYVK E+LGSALKVFDES ESVK+GSVLIW
Subjt:  VHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVFDESLESVKSGSVLIW

A0A1S3C6B0 pentatricopeptide repeat-containing protein At1g04840

7.0e-13

80.77

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Query:  VHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVFDESLESVKSGSVLIW
        +HCGILKFGL FDSFV V LV+MYVK  +LGSALKVFDES ESVK+GSVLIW
Subjt:  VHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVFDESLESVKSGSVLIW

A0A5A7SRY4 Pentatricopeptide repeat-containing protein

7.0e-13

80.77

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Query:  VHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVFDESLESVKSGSVLIW
        +HCGILKFGL FDSFV V LV+MYVK  +LGSALKVFDES ESVK+GSVLIW
Subjt:  VHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVFDESLESVKSGSVLIW

A0A6J1C9L2 pentatricopeptide repeat-containing protein At1g04840

7.8e-12

76.92

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Query:  VHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVFDESLESVKSGSVLIW
        +H GILKFGLEFDSFV V LV+MYVK EDL SALKVFDES + +K+GSVLIW
Subjt:  VHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVFDESLESVKSGSVLIW

A0A6J1HJP9 pentatricopeptide repeat-containing protein At1g04840

6.0e-12

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Query:  VHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVFDESLESVKSGSVLIW
        +H GILKFGLEFDSFV V LV+MYVK +DLGSALKVFDES + +K G+VLIW
Subjt:  VHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVFDESLESVKSGSVLIW

SwissProt top hits

e value

%identity

Alignment

Q9MAT2 Pentatricopeptide repeat-containing protein At1g04840

4.4e-04

44.23

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Query:  VHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVFDESLESVKSGSVLIW
        +H   LK  ++ DSFV + LV+MY K   L  A +VF+ES + +K  S+LIW
Subjt:  VHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVFDESLESVKSGSVLIW

Arabidopsis top hits

e value

%identity

Alignment

AT1G04840.1 Tetratricopeptide repeat (TPR)-like superfamily protein

3.1e-05

44.23

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Query:  VHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVFDESLESVKSGSVLIW
        +H   LK  ++ DSFV + LV+MY K   L  A +VF+ES + +K  S+LIW
Subjt:  VHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVFDESLESVKSGSVLIW

AT2G03880.1 Pentatricopeptide repeat (PPR) superfamily protein

2.7e-04

37.93

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Query:  VSRLYCVHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVFDESLESVKSGSVLIW
        +S +  +HCGI+K GLE D FV   L++++ K  +   AL VFDE +    +G  ++W
Subjt:  VSRLYCVHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVFDESLESVKSGSVLIW

AT3G13880.1 Tetratricopeptide repeat (TPR)-like superfamily protein

2.0e-04

28.28

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Query:  SEVVELENV-VDLVRKCSKTFKPRKSKVFRSAISRIEHRTSSKTLCSSCCVGWRRTAVGEETLRTMSR--------TKEASGSISVACCVSVVWVVVDYA
        S+ V L NV +D+  KC K  +        S   R + R   +   +S   G+ R    EE L  +++        T  A GS+  ACC+++        
Subjt:  SEVVELENV-VDLVRKCSKTFKPRKSKVFRSAISRIEHRTSSKTLCSSCCVGWRRTAVGEETLRTMSR--------TKEASGSISVACCVSVVWVVVDYA

Query:  RCVSRLYCVHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVF
          + +   +HC   K G+EFD  V   L++MY K   L  A+K+F
Subjt:  RCVSRLYCVHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVF

Sequences

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CDS sequence

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ATGTTCTTCTTCAGCAACTCGCCGGCGCTCGGTCGACGACTTTTTTTCCTTCTTTCTCTTTCTTTCTTTTCCTCTTCTTCTTTTTTCTCAAACAAAATACCCACTGAAAA
CCACCCACCCAAAAATACAGACCCAAACCGAACGATGCGAAGAACACAAATTAGAGCCCTTGCATTTCAGCCTTCAAACTACTGCATTTCAGCCTTCAAACCCACTAAAA
TGAAGACCCACGAGAGATCTGAAGTCGTCGAGCTCGAAAATGTCGTCGACCTTGTTAGGAAGTGTTCAAAAACGTTCAAACCTCGCAAATCTAAAGTTTTCAGGTCGGCG
ATATCGCGGATCGAGCACCGAACGTCGTCTAAAACACTCTGTTCAAGCTGTTGCGTGGGTTGGAGAAGAACCGCTGTCGGAGAAGAGACGTTGAGGACGATGTCACGCAC
GAAGGAGGCGTCAGGTTCGATCAGTGTTGCGTGCTGCGTCTCCGTCGTGTGGGTTGTCGTCGACTATGCTCGTTGCGTGTCGCGTCTCTATTGCGTGCATTGTGGGATTT
TGAAGTTTGGACTTGAGTTTGATTCTTTTGTGGGGGTTTTGTTGGTGAATATGTACGTGAAAGCTGAGGATTTGGGCTCTGCCTTGAAGGTGTTTGATGAAAGTCTTGAG
AGTGTTAAGAGTGGAAGTGTGTTGATTTGGTAA

mRNA sequence

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Protein sequence

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MFFFSNSPALGRRLFFLLSLSFFSSSSFFSNKIPTENHPPKNTDPNRTMRRTQIRALAFQPSNYCISAFKPTKMKTHERSEVVELENVVDLVRKCSKTFKPRKSKVFRSA
ISRIEHRTSSKTLCSSCCVGWRRTAVGEETLRTMSRTKEASGSISVACCVSVVWVVVDYARCVSRLYCVHCGILKFGLEFDSFVGVLLVNMYVKAEDLGSALKVFDESLE
SVKSGSVLIW

Lag0039018 (gene) of Sponge gourd (AG-4) v1 genome