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Lag0039024 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039024
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr2:33872336..33872859
RNA-Seq ExpressionLag0039024
SyntenyLag0039024
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]8.5e-1848.94Show/hide
Query:  ALASKKEKHVWTLDEDAMLVLVQCLVHPVQVGGWRGDNGTFRPGFQNQIGKMMKERLLGCNIVVSRNIELRGHPQAKGLRNRPFPWFNELALVF
        A +S+  KH WT +E+A   LV+CLV  V  GGWR DNGTFR G+  Q+ +MM E+L   NI  S  I+ R HP AKGL ++ FP++++L+ VF
Subjt:  ALASKKEKHVWTLDEDAMLVLVQCLVHPVQVGGWRGDNGTFRPGFQNQIGKMMKERLLGCNIVVSRNIELRGHPQAKGLRNRPFPWFNELALVF

KAA0032859.1 retrotransposon protein [Cucumis melo var. makuwa]1.0e-1542.86Show/hide
Query:  KHVWTLDEDAMLVLVQCLVHPVQVGGWRGDNGTFRPGFQNQIGKMMKERLLGCN---------------IVVSRNI---ELRGHPQAKGLRNRPFPWFNE
        +HVWT +E+    LV+CL+  V +GGW+ DNGTFRPG+  Q+ +MM E+L GC                IV  + +    +R HP AKGL N+PFP+++E
Subjt:  KHVWTLDEDAMLVLVQCLVHPVQVGGWRGDNGTFRPGFQNQIGKMMKERLLGCN---------------IVVSRNI---ELRGHPQAKGLRNRPFPWFNE

Query:  LALVF
        L  VF
Subjt:  LALVF

KAA0062786.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-1544.57Show/hide
Query:  ASKKEKHVWTLDEDAMLVLVQCLVHPVQVGGWRGDNGTFRPGFQNQIGKMMKERLLGCNIVVSRNIELRGHPQAKGLRNRPFPWFNELALVF
        +++  +HVWT +E+    LV+CL+  V +GGW+ DNGTF PG+  Q+ +MM E+L GC          + HP AKGL N+PFP+++EL  VF
Subjt:  ASKKEKHVWTLDEDAMLVLVQCLVHPVQVGGWRGDNGTFRPGFQNQIGKMMKERLLGCNIVVSRNIELRGHPQAKGLRNRPFPWFNELALVF

KAA0066807.1 retrotransposon protein [Cucumis melo var. makuwa]6.1e-1645.65Show/hide
Query:  ASKKEKHVWTLDEDAMLVLVQCLVHPVQVGGWRGDNGTFRPGFQNQIGKMMKERLLGCNIVVSRNIELRGHPQAKGLRNRPFPWFNELALVF
        +++  +HVWT +E+    LV+CL+  V +GGW+ DNGTFRPG+  Q+ +MM E+LL C          + HP AKGL N PFP++ EL  VF
Subjt:  ASKKEKHVWTLDEDAMLVLVQCLVHPVQVGGWRGDNGTFRPGFQNQIGKMMKERLLGCNIVVSRNIELRGHPQAKGLRNRPFPWFNELALVF

TYK19767.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-1547.83Show/hide
Query:  ASKKEKHVWTLDEDAMLVLVQCLVHPVQVGGWRGDNGTFRPGFQNQIGKMMKERLLGCNIVVSRNIELRGHPQAKGLRNRPFPWFNELALVF
        +S+  KH+WT  E+A   LV+CLV  V   GWR DNGTFR G+  Q+ +MM E+L GCNI  S       HP AKGL N+ FP+++++  VF
Subjt:  ASKKEKHVWTLDEDAMLVLVQCLVHPVQVGGWRGDNGTFRPGFQNQIGKMMKERLLGCNIVVSRNIELRGHPQAKGLRNRPFPWFNELALVF

TrEMBL top hitse value%identityAlignment
A0A5A7SUL5 Retrotransposon protein5.1e-1642.86Show/hide
Query:  KHVWTLDEDAMLVLVQCLVHPVQVGGWRGDNGTFRPGFQNQIGKMMKERLLGCN---------------IVVSRNI---ELRGHPQAKGLRNRPFPWFNE
        +HVWT +E+    LV+CL+  V +GGW+ DNGTFRPG+  Q+ +MM E+L GC                IV  + +    +R HP AKGL N+PFP+++E
Subjt:  KHVWTLDEDAMLVLVQCLVHPVQVGGWRGDNGTFRPGFQNQIGKMMKERLLGCN---------------IVVSRNI---ELRGHPQAKGLRNRPFPWFNE

Query:  LALVF
        L  VF
Subjt:  LALVF

A0A5A7VI45 Retrotransposon protein3.0e-1645.65Show/hide
Query:  ASKKEKHVWTLDEDAMLVLVQCLVHPVQVGGWRGDNGTFRPGFQNQIGKMMKERLLGCNIVVSRNIELRGHPQAKGLRNRPFPWFNELALVF
        +++  +HVWT +E+    LV+CL+  V +GGW+ DNGTFRPG+  Q+ +MM E+LL C          + HP AKGL N PFP++ EL  VF
Subjt:  ASKKEKHVWTLDEDAMLVLVQCLVHPVQVGGWRGDNGTFRPGFQNQIGKMMKERLLGCNIVVSRNIELRGHPQAKGLRNRPFPWFNELALVF

A0A5D3BCA9 Retrotransposon protein8.6e-1644.57Show/hide
Query:  ASKKEKHVWTLDEDAMLVLVQCLVHPVQVGGWRGDNGTFRPGFQNQIGKMMKERLLGCNIVVSRNIELRGHPQAKGLRNRPFPWFNELALVF
        +++  +HVWT +E+    LV+CL+  V +GGW+ DNGTF PG+  Q+ +MM E+L GC          + HP AKGL N+PFP+++EL  VF
Subjt:  ASKKEKHVWTLDEDAMLVLVQCLVHPVQVGGWRGDNGTFRPGFQNQIGKMMKERLLGCNIVVSRNIELRGHPQAKGLRNRPFPWFNELALVF

A0A5D3BZU3 Retrotransposon protein4.1e-1848.94Show/hide
Query:  ALASKKEKHVWTLDEDAMLVLVQCLVHPVQVGGWRGDNGTFRPGFQNQIGKMMKERLLGCNIVVSRNIELRGHPQAKGLRNRPFPWFNELALVF
        A +S+  KH WT +E+A   LV+CLV  V  GGWR DNGTFR G+  Q+ +MM E+L   NI  S  I+ R HP AKGL ++ FP++++L+ VF
Subjt:  ALASKKEKHVWTLDEDAMLVLVQCLVHPVQVGGWRGDNGTFRPGFQNQIGKMMKERLLGCNIVVSRNIELRGHPQAKGLRNRPFPWFNELALVF

A0A5D3D879 Retrotransposon protein8.6e-1647.83Show/hide
Query:  ASKKEKHVWTLDEDAMLVLVQCLVHPVQVGGWRGDNGTFRPGFQNQIGKMMKERLLGCNIVVSRNIELRGHPQAKGLRNRPFPWFNELALVF
        +S+  KH+WT  E+A   LV+CLV  V   GWR DNGTFR G+  Q+ +MM E+L GCNI  S       HP AKGL N+ FP+++++  VF
Subjt:  ASKKEKHVWTLDEDAMLVLVQCLVHPVQVGGWRGDNGTFRPGFQNQIGKMMKERLLGCNIVVSRNIELRGHPQAKGLRNRPFPWFNELALVF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGATGGTCGCGCCTGCCTTGGCTTCCAAGAAAGAGAAACACGTCTGGACACTGGACGAAGATGCAATGCTAGTGCTAGTGCAGTGCCTAGTTCACCCAGTCCAAGT
GGGGGGATGGCGTGGAGATAATGGGACGTTTCGTCCTGGCTTCCAGAACCAAATTGGGAAGATGATGAAAGAAAGACTACTAGGATGCAACATAGTCGTGAGTCGGAACA
TTGAGTTAAGAGGACATCCACAGGCCAAGGGCCTTCGTAACCGGCCATTCCCGTGGTTCAATGAGTTGGCGCTCGTTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGATGGTCGCGCCTGCCTTGGCTTCCAAGAAAGAGAAACACGTCTGGACACTGGACGAAGATGCAATGCTAGTGCTAGTGCAGTGCCTAGTTCACCCAGTCCAAGT
GGGGGGATGGCGTGGAGATAATGGGACGTTTCGTCCTGGCTTCCAGAACCAAATTGGGAAGATGATGAAAGAAAGACTACTAGGATGCAACATAGTCGTGAGTCGGAACA
TTGAGTTAAGAGGACATCCACAGGCCAAGGGCCTTCGTAACCGGCCATTCCCGTGGTTCAATGAGTTGGCGCTCGTTTTTTAG
Protein sequenceShow/hide protein sequence
MQMVAPALASKKEKHVWTLDEDAMLVLVQCLVHPVQVGGWRGDNGTFRPGFQNQIGKMMKERLLGCNIVVSRNIELRGHPQAKGLRNRPFPWFNELALVF