| GenBank top hits | e value | %identity | Alignment |
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| KAA0026154.1 gag/pol protein [Cucumis melo var. makuwa] | 1.3e-25 | 43.32 | Show/hide |
Query: MQNSKKDSLSFRHGILMSKELCPETPQNVEDMRHMP--------------------YAVGIVT------------------AYEAAIKTVWLRKFLPDLE
+QNSKK L FRH + +SKE CP+TPQ VEDMR +P YAVGIV+ A EAA + VWLRKFL DLE
Subjt: MQNSKKDSLSFRHGILMSKELCPETPQNVEDMRHMP--------------------YAVGIVT------------------AYEAAIKTVWLRKFLPDLE
Query: GVPNVNLLITLYCDSSRAMENLKEPRSHKKSRQIE----------LNGSIVV-----------SFMKALWTKLYEDHLEGLDLRDMY
VPN+NL ITLYCD+S + N KEP SHK+ + IE G ++V SF K L K++E HLE L LRDMY
Subjt: GVPNVNLLITLYCDSSRAMENLKEPRSHKKSRQIE----------LNGSIVV-----------SFMKALWTKLYEDHLEGLDLRDMY
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| KAA0035552.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa] | 3.7e-28 | 50.68 | Show/hide |
Query: QNSKKDSLSFRHGILMSKELCPETPQNVEDMRHMPYAVGIVTAYEAAIKTVWLRKFLPDLEGVPNVNLLITLYCDSSRAMENLKEPRSHKKSRQIE----
+NSKKD L F++G+ +SKE CP+TPQ VE+MRH V A EAAI+ VW RKFL DLE V N+NL ITLYCD+S A+ N KEPRSHK+ + IE
Subjt: QNSKKDSLSFRHGILMSKELCPETPQNVEDMRHMPYAVGIVTAYEAAIKTVWLRKFLPDLEGVPNVNLLITLYCDSSRAMENLKEPRSHKKSRQIE----
Query: -----------------LNGSIVVSFMKALWTKLYEDHLEGLDLRDMY
L +I F K L TK++E HLE L LRDMY
Subjt: -----------------LNGSIVVSFMKALWTKLYEDHLEGLDLRDMY
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| KAA0053385.1 putative gag-pol polyprotein [Cucumis melo var. makuwa] | 3.7e-28 | 43.46 | Show/hide |
Query: IRYEMQNSKKDSLSFRHGILMSKELCPETPQNVEDMRHMP--------------------YAVGIVT------------------AYEAAIKTVWLRKFL
+RY MQNSKKD L FRHG+ +SKE CP+TPQ EDMR +P YAVGIV+ A +AA + +WLRKFL
Subjt: IRYEMQNSKKDSLSFRHGILMSKELCPETPQNVEDMRHMP--------------------YAVGIVT------------------AYEAAIKTVWLRKFL
Query: PDLEGVPNVNLLITLYCDSSRAMENLKEPRSHKKSRQIE----------LNGSIVVS-----------FMKALWTKLYEDHLEGLDLRDMY
DLE VPN+NL ITLYCD+S A+ N KE RSHK+ + IE G ++V+ F K L K++E HLE L LRDMY
Subjt: PDLEGVPNVNLLITLYCDSSRAMENLKEPRSHKKSRQIE----------LNGSIVVS-----------FMKALWTKLYEDHLEGLDLRDMY
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| KAA0060794.1 putative Integrase core domain [Cucumis melo var. makuwa] | 5.4e-27 | 40.48 | Show/hide |
Query: IRYEMQNSKKDSLSFRHGILMSKELCPETPQNVEDMRHMP--------------------YAVGIVT---------------------------------
+RY MQNSKKD L F+HG+ +SKE CP+TPQ VEDMR +P YAVGIV+
Subjt: IRYEMQNSKKDSLSFRHGILMSKELCPETPQNVEDMRHMP--------------------YAVGIVT---------------------------------
Query: ----AYEAAIKTVWLRKFLPDLEGVPNVNLLITLYCDSSRAMENLKEPRSHKKSRQIE---------------------LNGSIVVSFMKALWTKLYEDH
A EAA + VWLRKFL DLE VPN+NL ITLYCD+S A+ N KEPRSHK+ + IE +I F K L K+++DH
Subjt: ----AYEAAIKTVWLRKFLPDLEGVPNVNLLITLYCDSSRAMENLKEPRSHKKSRQIE---------------------LNGSIVVSFMKALWTKLYEDH
Query: LEGLDLRDMY
LE L LRDMY
Subjt: LEGLDLRDMY
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| TYK30982.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa] | 4.9e-28 | 51.02 | Show/hide |
Query: NSKKDSLSFRHGILMSKELCPETPQNVEDMRHMPYAVGIVTAYEAAIKTVWLRKFLPDLEGVPNVNLLITLYCDSSRAMENLKEPRSHKKSRQIE-----
NSKKD L F++G+ +SKE CP+TPQ VE+MRH V A EAAI+ VW RKFL DLE V N+NL ITLYCD+S A+ N KEPRSHK+ + IE
Subjt: NSKKDSLSFRHGILMSKELCPETPQNVEDMRHMPYAVGIVTAYEAAIKTVWLRKFLPDLEGVPNVNLLITLYCDSSRAMENLKEPRSHKKSRQIE-----
Query: ----------------LNGSIVVSFMKALWTKLYEDHLEGLDLRDMY
L +I F K L TK++E HLE L LRDMY
Subjt: ----------------LNGSIVVSFMKALWTKLYEDHLEGLDLRDMY
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SKC5 Gag/pol protein | 6.4e-26 | 43.32 | Show/hide |
Query: MQNSKKDSLSFRHGILMSKELCPETPQNVEDMRHMP--------------------YAVGIVT------------------AYEAAIKTVWLRKFLPDLE
+QNSKK L FRH + +SKE CP+TPQ VEDMR +P YAVGIV+ A EAA + VWLRKFL DLE
Subjt: MQNSKKDSLSFRHGILMSKELCPETPQNVEDMRHMP--------------------YAVGIVT------------------AYEAAIKTVWLRKFLPDLE
Query: GVPNVNLLITLYCDSSRAMENLKEPRSHKKSRQIE----------LNGSIVV-----------SFMKALWTKLYEDHLEGLDLRDMY
VPN+NL ITLYCD+S + N KEP SHK+ + IE G ++V SF K L K++E HLE L LRDMY
Subjt: GVPNVNLLITLYCDSSRAMENLKEPRSHKKSRQIE----------LNGSIVV-----------SFMKALWTKLYEDHLEGLDLRDMY
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| A0A5A7SWB2 Retrovirus-related pol polyprotein from transposon tnt 1-94 | 1.8e-28 | 50.68 | Show/hide |
Query: QNSKKDSLSFRHGILMSKELCPETPQNVEDMRHMPYAVGIVTAYEAAIKTVWLRKFLPDLEGVPNVNLLITLYCDSSRAMENLKEPRSHKKSRQIE----
+NSKKD L F++G+ +SKE CP+TPQ VE+MRH V A EAAI+ VW RKFL DLE V N+NL ITLYCD+S A+ N KEPRSHK+ + IE
Subjt: QNSKKDSLSFRHGILMSKELCPETPQNVEDMRHMPYAVGIVTAYEAAIKTVWLRKFLPDLEGVPNVNLLITLYCDSSRAMENLKEPRSHKKSRQIE----
Query: -----------------LNGSIVVSFMKALWTKLYEDHLEGLDLRDMY
L +I F K L TK++E HLE L LRDMY
Subjt: -----------------LNGSIVVSFMKALWTKLYEDHLEGLDLRDMY
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| A0A5A7UI63 Putative gag-pol polyprotein | 1.8e-28 | 43.46 | Show/hide |
Query: IRYEMQNSKKDSLSFRHGILMSKELCPETPQNVEDMRHMP--------------------YAVGIVT------------------AYEAAIKTVWLRKFL
+RY MQNSKKD L FRHG+ +SKE CP+TPQ EDMR +P YAVGIV+ A +AA + +WLRKFL
Subjt: IRYEMQNSKKDSLSFRHGILMSKELCPETPQNVEDMRHMP--------------------YAVGIVT------------------AYEAAIKTVWLRKFL
Query: PDLEGVPNVNLLITLYCDSSRAMENLKEPRSHKKSRQIE----------LNGSIVVS-----------FMKALWTKLYEDHLEGLDLRDMY
DLE VPN+NL ITLYCD+S A+ N KE RSHK+ + IE G ++V+ F K L K++E HLE L LRDMY
Subjt: PDLEGVPNVNLLITLYCDSSRAMENLKEPRSHKKSRQIE----------LNGSIVVS-----------FMKALWTKLYEDHLEGLDLRDMY
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| A0A5A7V0F0 Putative Integrase core domain | 2.6e-27 | 40.48 | Show/hide |
Query: IRYEMQNSKKDSLSFRHGILMSKELCPETPQNVEDMRHMP--------------------YAVGIVT---------------------------------
+RY MQNSKKD L F+HG+ +SKE CP+TPQ VEDMR +P YAVGIV+
Subjt: IRYEMQNSKKDSLSFRHGILMSKELCPETPQNVEDMRHMP--------------------YAVGIVT---------------------------------
Query: ----AYEAAIKTVWLRKFLPDLEGVPNVNLLITLYCDSSRAMENLKEPRSHKKSRQIE---------------------LNGSIVVSFMKALWTKLYEDH
A EAA + VWLRKFL DLE VPN+NL ITLYCD+S A+ N KEPRSHK+ + IE +I F K L K+++DH
Subjt: ----AYEAAIKTVWLRKFLPDLEGVPNVNLLITLYCDSSRAMENLKEPRSHKKSRQIE---------------------LNGSIVVSFMKALWTKLYEDH
Query: LEGLDLRDMY
LE L LRDMY
Subjt: LEGLDLRDMY
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| A0A5D3E512 Retrovirus-related pol polyprotein from transposon tnt 1-94 | 2.4e-28 | 51.02 | Show/hide |
Query: NSKKDSLSFRHGILMSKELCPETPQNVEDMRHMPYAVGIVTAYEAAIKTVWLRKFLPDLEGVPNVNLLITLYCDSSRAMENLKEPRSHKKSRQIE-----
NSKKD L F++G+ +SKE CP+TPQ VE+MRH V A EAAI+ VW RKFL DLE V N+NL ITLYCD+S A+ N KEPRSHK+ + IE
Subjt: NSKKDSLSFRHGILMSKELCPETPQNVEDMRHMPYAVGIVTAYEAAIKTVWLRKFLPDLEGVPNVNLLITLYCDSSRAMENLKEPRSHKKSRQIE-----
Query: ----------------LNGSIVVSFMKALWTKLYEDHLEGLDLRDMY
L +I F K L TK++E HLE L LRDMY
Subjt: ----------------LNGSIVVSFMKALWTKLYEDHLEGLDLRDMY
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