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Lag0039040 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039040
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationchr2:34376869..34379624
RNA-Seq ExpressionLag0039040
SyntenyLag0039040
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067206.1 hypothetical protein E6C27_scaffold418G00080 [Cucumis melo var. makuwa]5.6e-2984.15Show/hide
Query:  DMDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEEKGVKMAWEKLCSLEDGTEDKKS
        D+DSINN LHVPEGPIT+ KAKKIQEAFTLHVQKL N+QRE +NFEPKFLYNVSSASQEE  +KMAWEKLCSLEDGT D+KS
Subjt:  DMDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEEKGVKMAWEKLCSLEDGTEDKKS

TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]4.0e-2781.71Show/hide
Query:  DMDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEEKGVKMAWEKLCSLEDGTEDKKS
        D+DS+NN LHVPEGPIT+ KAKKIQEAFTLHVQKLAN+QRE +NFE KFLYNVSSASQEE GVKMA EKLC+LEDGT ++KS
Subjt:  DMDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEEKGVKMAWEKLCSLEDGTEDKKS

TYK08102.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]8.9e-2780.72Show/hide
Query:  DMDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEEKGVKMAWEKLCSLEDGTEDKKSE
        D+DS+NN LHVPEGPIT+ KAKKIQEAFTLHVQKLAN+QRE +NFE KFLYNVSSASQEE GVKMA EKLC+LEDGT ++K E
Subjt:  DMDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEEKGVKMAWEKLCSLEDGTEDKKSE

TYK09768.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]2.3e-2753.42Show/hide
Query:  LYLGDYEAMKGDELDKLFPTIKFQSDKDAIKIFIFYYIELAMMGREG---KPQMDTSMLNIIDDWEIFCDMDSINNPLHVPEGPITRSKAKKIQEAFTLH
        ++  D  + + + +  L   IK + +K   K+     +     GR+    KP  +   L I    E+  D+DSINN LH+PEGPIT+ KAKKIQEAFTLH
Subjt:  LYLGDYEAMKGDELDKLFPTIKFQSDKDAIKIFIFYYIELAMMGREG---KPQMDTSMLNIIDDWEIFCDMDSINNPLHVPEGPITRSKAKKIQEAFTLH

Query:  VQKLANSQREPENFEPKFLYNVSSASQEEKGVKMAWEKLCSLEDGT
        VQKLAN+QRE ENFEPKFLYNVSSASQEE  VKM  EKLCSLED T
Subjt:  VQKLANSQREPENFEPKFLYNVSSASQEEKGVKMAWEKLCSLEDGT

TYK11649.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]1.5e-2666.04Show/hide
Query:  DMDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEEKGVKMAWEKLCSLEDGTEDKKSEDHRVSWTDRGGTSIYES
        D+DS+NN LHVPEGPIT+ KAKKIQEAFTLHVQKLAN+QRE +NFE KFLYNVSSASQEE GVKMA EKLC+LEDGT ++K   +        GT  +E 
Subjt:  DMDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEEKGVKMAWEKLCSLEDGTEDKKSEDHRVSWTDRGGTSIYES

Query:  DNMEPP
             P
Subjt:  DNMEPP

TrEMBL top hitse value%identityAlignment
A0A5A7VL78 RT_RNaseH_2 domain-containing protein2.7e-2984.15Show/hide
Query:  DMDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEEKGVKMAWEKLCSLEDGTEDKKS
        D+DSINN LHVPEGPIT+ KAKKIQEAFTLHVQKL N+QRE +NFEPKFLYNVSSASQEE  +KMAWEKLCSLEDGT D+KS
Subjt:  DMDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEEKGVKMAWEKLCSLEDGTEDKKS

A0A5D3BWE8 F15O4.131.9e-2781.71Show/hide
Query:  DMDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEEKGVKMAWEKLCSLEDGTEDKKS
        D+DS+NN LHVPEGPIT+ KAKKIQEAFTLHVQKLAN+QRE +NFE KFLYNVSSASQEE GVKMA EKLC+LEDGT ++KS
Subjt:  DMDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEEKGVKMAWEKLCSLEDGTEDKKS

A0A5D3C9X5 Transposon Ty3-I Gag-Pol polyprotein4.3e-2780.72Show/hide
Query:  DMDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEEKGVKMAWEKLCSLEDGTEDKKSE
        D+DS+NN LHVPEGPIT+ KAKKIQEAFTLHVQKLAN+QRE +NFE KFLYNVSSASQEE GVKMA EKLC+LEDGT ++K E
Subjt:  DMDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEEKGVKMAWEKLCSLEDGTEDKKSE

A0A5D3CEW5 Transposon Ty3-I Gag-Pol polyprotein1.1e-2753.42Show/hide
Query:  LYLGDYEAMKGDELDKLFPTIKFQSDKDAIKIFIFYYIELAMMGREG---KPQMDTSMLNIIDDWEIFCDMDSINNPLHVPEGPITRSKAKKIQEAFTLH
        ++  D  + + + +  L   IK + +K   K+     +     GR+    KP  +   L I    E+  D+DSINN LH+PEGPIT+ KAKKIQEAFTLH
Subjt:  LYLGDYEAMKGDELDKLFPTIKFQSDKDAIKIFIFYYIELAMMGREG---KPQMDTSMLNIIDDWEIFCDMDSINNPLHVPEGPITRSKAKKIQEAFTLH

Query:  VQKLANSQREPENFEPKFLYNVSSASQEEKGVKMAWEKLCSLEDGT
        VQKLAN+QRE ENFEPKFLYNVSSASQEE  VKM  EKLCSLED T
Subjt:  VQKLANSQREPENFEPKFLYNVSSASQEEKGVKMAWEKLCSLEDGT

A0A5D3CN32 Transposon Ty3-I Gag-Pol polyprotein7.3e-2766.04Show/hide
Query:  DMDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEEKGVKMAWEKLCSLEDGTEDKKSEDHRVSWTDRGGTSIYES
        D+DS+NN LHVPEGPIT+ KAKKIQEAFTLHVQKLAN+QRE +NFE KFLYNVSSASQEE GVKMA EKLC+LEDGT ++K   +        GT  +E 
Subjt:  DMDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEEKGVKMAWEKLCSLEDGTEDKKSEDHRVSWTDRGGTSIYES

Query:  DNMEPP
             P
Subjt:  DNMEPP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTTTGGGTTGTTAGGGCATAAGGTTTCATTTGGTATACAAGAATTTGATCTCATCACTAGTCTTACACATGCAACGAGGCATGTTAGGAGGGATTTTGTAATCGG
TAGACTTAGAGCCTTATATCTAGGAGATTATGAGGCAATGAAAGGTGATGAATTGGATAAACTGTTCCCGACAATTAAGTTCCAGAGTGACAAAGATGCAATTAAAATTT
TCATTTTCTATTATATTGAGTTGGCTATGATGGGGAGGGAGGGGAAACCACAGATGGATACGTCCATGCTTAACATAATCGATGACTGGGAGATTTTTTGTGATATGGAT
TCAATCAATAATCCATTACATGTACCTGAAGGACCAATCACAAGGAGCAAGGCAAAGAAGATACAAGAGGCTTTCACATTGCATGTTCAAAAGCTAGCAAATTCACAACG
AGAGCCCGAGAATTTTGAACCCAAATTTTTGTATAATGTTAGTTCAGCAAGTCAAGAAGAGAAGGGAGTCAAGATGGCATGGGAAAAGTTGTGTAGTTTGGAAGATGGCA
CGGAGGACAAAAAAAGCGAGGATCATAGAGTTTCTTGGACCGACAGAGGAGGAACATCGATATATGAATCAGATAATATGGAACCCCCACGTCCACCAACGCCTTCTCCA
CCCCCTCCAGCAGTTGACACTGGTGTTGGGCAGGAAATTGAGATGGCGGATGTGATTGTACATGACCATGTCCAGATAAATGAGGCAGATGAAGGTCATTCTAAAGGAGC
TAATGAAGATGACATGTTTGAAAACCCAGAAAAAGTTGGTGGAGATGAGGGTCCTTCTAAAGGAGGTGATGAGGGTCCTTTTGGTGGGTTCGAACACCTAGAAAAAGGAG
ATGCGCCATCGGGAAGAGATGAGCCAGCTGAAGAGACCTCGAAAGGAGAATGTATTGCTGAGCGACTGGAGGGAGCAAATTCTGTACTGGAGCTAAGCGAGGAGCAAAAC
TGCCACGTCACAGCTCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTTTTGGGTTGTTAGGGCATAAGGTTTCATTTGGTATACAAGAATTTGATCTCATCACTAGTCTTACACATGCAACGAGGCATGTTAGGAGGGATTTTGTAATCGG
TAGACTTAGAGCCTTATATCTAGGAGATTATGAGGCAATGAAAGGTGATGAATTGGATAAACTGTTCCCGACAATTAAGTTCCAGAGTGACAAAGATGCAATTAAAATTT
TCATTTTCTATTATATTGAGTTGGCTATGATGGGGAGGGAGGGGAAACCACAGATGGATACGTCCATGCTTAACATAATCGATGACTGGGAGATTTTTTGTGATATGGAT
TCAATCAATAATCCATTACATGTACCTGAAGGACCAATCACAAGGAGCAAGGCAAAGAAGATACAAGAGGCTTTCACATTGCATGTTCAAAAGCTAGCAAATTCACAACG
AGAGCCCGAGAATTTTGAACCCAAATTTTTGTATAATGTTAGTTCAGCAAGTCAAGAAGAGAAGGGAGTCAAGATGGCATGGGAAAAGTTGTGTAGTTTGGAAGATGGCA
CGGAGGACAAAAAAAGCGAGGATCATAGAGTTTCTTGGACCGACAGAGGAGGAACATCGATATATGAATCAGATAATATGGAACCCCCACGTCCACCAACGCCTTCTCCA
CCCCCTCCAGCAGTTGACACTGGTGTTGGGCAGGAAATTGAGATGGCGGATGTGATTGTACATGACCATGTCCAGATAAATGAGGCAGATGAAGGTCATTCTAAAGGAGC
TAATGAAGATGACATGTTTGAAAACCCAGAAAAAGTTGGTGGAGATGAGGGTCCTTCTAAAGGAGGTGATGAGGGTCCTTTTGGTGGGTTCGAACACCTAGAAAAAGGAG
ATGCGCCATCGGGAAGAGATGAGCCAGCTGAAGAGACCTCGAAAGGAGAATGTATTGCTGAGCGACTGGAGGGAGCAAATTCTGTACTGGAGCTAAGCGAGGAGCAAAAC
TGCCACGTCACAGCTCGTTAG
Protein sequenceShow/hide protein sequence
MSFGLLGHKVSFGIQEFDLITSLTHATRHVRRDFVIGRLRALYLGDYEAMKGDELDKLFPTIKFQSDKDAIKIFIFYYIELAMMGREGKPQMDTSMLNIIDDWEIFCDMD
SINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANSQREPENFEPKFLYNVSSASQEEKGVKMAWEKLCSLEDGTEDKKSEDHRVSWTDRGGTSIYESDNMEPPRPPTPSP
PPPAVDTGVGQEIEMADVIVHDHVQINEADEGHSKGANEDDMFENPEKVGGDEGPSKGGDEGPFGGFEHLEKGDAPSGRDEPAEETSKGECIAERLEGANSVLELSEEQN
CHVTAR