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Lag0039070 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039070
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr2:35233433..35238243
RNA-Seq ExpressionLag0039070
SyntenyLag0039070
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]3.4e-1356.41Show/hide
Query:  HELVSILSIMADSQRQLFNLISFFMNNHRRLENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRT
        HEL SI++    SQRQL  ++    N+ +R+ +     RH+IRQLA FR+IH SDL CR+STRMDRRCFAILC +LRT
Subjt:  HELVSILSIMADSQRQLFNLISFFMNNHRRLENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRT

KAA0048361.1 retrotransposon protein [Cucumis melo var. makuwa]3.4e-1356.41Show/hide
Query:  HELVSILSIMADSQRQLFNLISFFMNNHRRLENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRT
        HEL SI++    SQRQL  ++    N+ +R+ +     RH+IRQLA FR+IH SDL CR+STRMDRRCFAILC +LRT
Subjt:  HELVSILSIMADSQRQLFNLISFFMNNHRRLENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRT

KAA0065286.1 retrotransposon protein [Cucumis melo var. makuwa]3.4e-1356.41Show/hide
Query:  HELVSILSIMADSQRQLFNLISFFMNNHRRLENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRT
        HEL SI++    SQRQL  ++    N+ +R+ +     RH+IRQLA FR+IH SDL CR+STRMDRRCFAILC +LRT
Subjt:  HELVSILSIMADSQRQLFNLISFFMNNHRRLENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRT

KAA0065736.1 retrotransposon protein [Cucumis melo var. makuwa]5.3e-1457.69Show/hide
Query:  HELVSILSIMADSQRQLFNLISFFMNNHRRLENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRT
        HEL SI++    SQRQL  ++    N+ +R+ +     RH+IRQLA FR+IHESDL CR+STRMDRRCFAILC +LRT
Subjt:  HELVSILSIMADSQRQLFNLISFFMNNHRRLENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRT

XP_008454692.1 PREDICTED: uncharacterized protein LOC103495048 [Cucumis melo]2.6e-1354.32Show/hide
Query:  HELVSILSIMADSQRQLFNLISFFMNNHRRLENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTSE
        HEL  I+++   SQRQL   +    N+ +R+ +    IRH+IRQLA FR+IH SDL CR+STRMD+RCFAILC +LRT +E
Subjt:  HELVSILSIMADSQRQLFNLISFFMNNHRRLENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTSE

TrEMBL top hitse value%identityAlignment
A0A1S3BYR8 uncharacterized protein LOC1034950481.3e-1354.32Show/hide
Query:  HELVSILSIMADSQRQLFNLISFFMNNHRRLENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTSE
        HEL  I+++   SQRQL   +    N+ +R+ +    IRH+IRQLA FR+IH SDL CR+STRMD+RCFAILC +LRT +E
Subjt:  HELVSILSIMADSQRQLFNLISFFMNNHRRLENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTSE

A0A5A7T5Y5 Retrotransposon protein1.3e-1354.32Show/hide
Query:  HELVSILSIMADSQRQLFNLISFFMNNHRRLENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTSE
        HEL  I+++   SQRQL   +    N+ +R+ +    IRH+IRQLA FR+IH SDL CR+STRMD+RCFAILC +LRT +E
Subjt:  HELVSILSIMADSQRQLFNLISFFMNNHRRLENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTSE

A0A5A7TXW1 Retrotransposon protein1.7e-1356.41Show/hide
Query:  HELVSILSIMADSQRQLFNLISFFMNNHRRLENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRT
        HEL SI++    SQRQL  ++    N+ +R+ +     RH+IRQLA FR+IH SDL CR+STRMDRRCFAILC +LRT
Subjt:  HELVSILSIMADSQRQLFNLISFFMNNHRRLENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRT

A0A5A7VHB0 Retrotransposon protein2.6e-1457.69Show/hide
Query:  HELVSILSIMADSQRQLFNLISFFMNNHRRLENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRT
        HEL SI++    SQRQL  ++    N+ +R+ +     RH+IRQLA FR+IHESDL CR+STRMDRRCFAILC +LRT
Subjt:  HELVSILSIMADSQRQLFNLISFFMNNHRRLENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRT

A0A5D3BDX0 Retrotransposon protein1.7e-1356.41Show/hide
Query:  HELVSILSIMADSQRQLFNLISFFMNNHRRLENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRT
        HEL SI++    SQRQL  ++    N+ +R+ +     RH+IRQLA FR+IH SDL CR+STRMDRRCFAILC +LRT
Subjt:  HELVSILSIMADSQRQLFNLISFFMNNHRRLENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTATCTAACCTCATTTCTTCCTTCCTTCTTCATATGTTCTTGCCGTCTCTCCTTCTCCTCTCTTCTGGGTTAGCAGATCTGAAGTTTGTTTCCTCCTTGCCCCTTCT
TTCTGATCTACGACCGGAAACCCATCCCATGTCGCTTCAACTTGCCGTGGGTGTCGACTATATGAATCGGTATCCGCTTGGTAGATTGGGCATGGTGAGGGGTGGGCCGA
AGGTCCGACGAACCTCAACCCGATCTCCACCTTCTTCTGTTTCGTTTCACGCATCCCGATCTCGTATAACGGTTTACTCCAAAAAAGCCGTTATATTCGAGGCTAAAGTA
GTAACGTACGTAATGGATTCGATAAGCCCGCATGAACTTGTCTCCATACTTTCTATAATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAGCTTCTTCATGAACAA
CCACCGTAGGTTAGAAAACCAATCTCCCTACATCCGCCACCAGATAAGGCAATTAGCCTGCTTCCGGTTGATACATGAAAGTGACCTGTGCTGTCGAGAAAGCACCAGGA
TGGATAGGAGATGTTTTGCAATTTTGTGTTCTATGTTGAGAACGACTTCCGAGTTCGTGGGAAGGAAATCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTATCTAACCTCATTTCTTCCTTCCTTCTTCATATGTTCTTGCCGTCTCTCCTTCTCCTCTCTTCTGGGTTAGCAGATCTGAAGTTTGTTTCCTCCTTGCCCCTTCT
TTCTGATCTACGACCGGAAACCCATCCCATGTCGCTTCAACTTGCCGTGGGTGTCGACTATATGAATCGGTATCCGCTTGGTAGATTGGGCATGGTGAGGGGTGGGCCGA
AGGTCCGACGAACCTCAACCCGATCTCCACCTTCTTCTGTTTCGTTTCACGCATCCCGATCTCGTATAACGGTTTACTCCAAAAAAGCCGTTATATTCGAGGCTAAAGTA
GTAACGTACGTAATGGATTCGATAAGCCCGCATGAACTTGTCTCCATACTTTCTATAATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAGCTTCTTCATGAACAA
CCACCGTAGGTTAGAAAACCAATCTCCCTACATCCGCCACCAGATAAGGCAATTAGCCTGCTTCCGGTTGATACATGAAAGTGACCTGTGCTGTCGAGAAAGCACCAGGA
TGGATAGGAGATGTTTTGCAATTTTGTGTTCTATGTTGAGAACGACTTCCGAGTTCGTGGGAAGGAAATCGTAG
Protein sequenceShow/hide protein sequence
MVSNLISSFLLHMFLPSLLLLSSGLADLKFVSSLPLLSDLRPETHPMSLQLAVGVDYMNRYPLGRLGMVRGGPKVRRTSTRSPPSSVSFHASRSRITVYSKKAVIFEAKV
VTYVMDSISPHELVSILSIMADSQRQLFNLISFFMNNHRRLENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCFAILCSMLRTTSEFVGRKS