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Lag0039085 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039085
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr2:35645590..35646286
RNA-Seq ExpressionLag0039085
SyntenyLag0039085
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025558 - Domain of unknown function DUF4283
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036875 - Zinc finger, CCHC-type superfamily
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD6340009.1 unnamed protein product [Miscanthus lutarioriparius]2.6e-1840.54Show/hide
Query:  LDFRYAKFWFHFPKVPFVCSNRKYAKALANSVGKFEEVETDEEGRHWGETLRVKVRVDINKPLRRGTYLTMRTPESEKWIPITIEKRPDFCYNCGRVGHM
        +DF +   W    ++P    NR  AK + + VG+F EVE D      G +LR+K+R+DI KPLR G    +   + E+W PIT E  PDFCY CGR+GH+
Subjt:  LDFRYAKFWFHFPKVPFVCSNRKYAKALANSVGKFEEVETDEEGRHWGETLRVKVRVDINKPLRRGTYLTMRTPESEKWIPITIEKRPDFCYNCGRVGHM

Query:  VKECDEQINDD
         + C +++  D
Subjt:  VKECDEQINDD

TXG72599.1 hypothetical protein EZV62_001178 [Acer yangbiense]2.2e-1738.39Show/hide
Query:  NTTTLDFRYAKFWFHFPKVPFVCSNRKYAKALANSVGKFEEVETDEEGRHWGETLRVKVRVDINKPLRRGTYLTMRTPESEKWIPITIEKRPDFCYNCGR
        N   ++F  A FW     +P +C NR+ A+ LA  +G+  E+   E    WG  LRVKVR+DI+KPL+R   L +   +    + +  E+ P+FCY CGR
Subjt:  NTTTLDFRYAKFWFHFPKVPFVCSNRKYAKALANSVGKFEEVETDEEGRHWGETLRVKVRVDINKPLRRGTYLTMRTPESEKWIPITIEKRPDFCYNCGR

Query:  VGHMVKECDEQI
        +GH +KEC +++
Subjt:  VGHMVKECDEQI

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]1.4e-1943.4Show/hide
Query:  LDFRYAKFWFHFPKVPFVCSNRKYAKALANSVGKFEEVETDEEGRHWGETLRVKVRVDINKPLRRGTYLTMRTPESEKWIPITIEKRPDFCYNCGRVGHM
        +DFR    W HF  +   C N+  A  L N++G FE+VE++     WG  LRV+VR D+ KPL RG  L +  P    WIPI  E+ PDF Y+CGR+ H+
Subjt:  LDFRYAKFWFHFPKVPFVCSNRKYAKALANSVGKFEEVETDEEGRHWGETLRVKVRVDINKPLRRGTYLTMRTPESEKWIPITIEKRPDFCYNCGRVGHM

Query:  VKECDE
        +K+C +
Subjt:  VKECDE

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]1.4e-1942.2Show/hide
Query:  NTTTLDFRYAKFWFHFPKVPFVCSNRKYAKALANSVGKFEEVETDEEGRHWGETLRVKVRVDINKPLRRGTYLTMRTPESEKWIPITIEKRPDFCYNCGR
        N + L+F    FW H   +P    N+  A  L N++G F +V+ +E+G  WG +LR++V +DI KPLRRG  + +  P    WIPI  E+ PDFCY CG 
Subjt:  NTTTLDFRYAKFWFHFPKVPFVCSNRKYAKALANSVGKFEEVETDEEGRHWGETLRVKVRVDINKPLRRGTYLTMRTPESEKWIPITIEKRPDFCYNCGR

Query:  VGHMVKECD
        +GH   +CD
Subjt:  VGHMVKECD

XP_030482224.1 uncharacterized protein LOC115699120 [Cannabis sativa]9.7e-1836.7Show/hide
Query:  DNTTTLDFRYAKFWFHFPKVPFVCSNRKYAKALANSVGKFEEVETDEEGRHWGETLRVKVRVDINKPLRRGTYLTMRTPESEKWIPITIEKRPDFCYNCG
        +N ++ +  Y  FW    ++PF+   ++ AKAL N +G+F EV  D     WG  LRV+V++DI KPL+RG  +T+     + W+    E+ P++C  CG
Subjt:  DNTTTLDFRYAKFWFHFPKVPFVCSNRKYAKALANSVGKFEEVETDEEGRHWGETLRVKVRVDINKPLRRGTYLTMRTPESEKWIPITIEKRPDFCYNCG

Query:  RVGHMVKEC
        R+GH   +C
Subjt:  RVGHMVKEC

TrEMBL top hitse value%identityAlignment
A0A5C7IU01 CCHC-type domain-containing protein1.1e-1738.39Show/hide
Query:  NTTTLDFRYAKFWFHFPKVPFVCSNRKYAKALANSVGKFEEVETDEEGRHWGETLRVKVRVDINKPLRRGTYLTMRTPESEKWIPITIEKRPDFCYNCGR
        N   ++F  A FW     +P +C NR+ A+ LA  +G+  E+   E    WG  LRVKVR+DI+KPL+R   L +   +    + +  E+ P+FCY CGR
Subjt:  NTTTLDFRYAKFWFHFPKVPFVCSNRKYAKALANSVGKFEEVETDEEGRHWGETLRVKVRVDINKPLRRGTYLTMRTPESEKWIPITIEKRPDFCYNCGR

Query:  VGHMVKECDEQI
        +GH +KEC +++
Subjt:  VGHMVKECDEQI

A0A6J1BSZ1 uncharacterized protein LOC1110054816.6e-2043.4Show/hide
Query:  LDFRYAKFWFHFPKVPFVCSNRKYAKALANSVGKFEEVETDEEGRHWGETLRVKVRVDINKPLRRGTYLTMRTPESEKWIPITIEKRPDFCYNCGRVGHM
        +DFR    W HF  +   C N+  A  L N++G FE+VE++     WG  LRV+VR D+ KPL RG  L +  P    WIPI  E+ PDF Y+CGR+ H+
Subjt:  LDFRYAKFWFHFPKVPFVCSNRKYAKALANSVGKFEEVETDEEGRHWGETLRVKVRVDINKPLRRGTYLTMRTPESEKWIPITIEKRPDFCYNCGRVGHM

Query:  VKECDE
        +K+C +
Subjt:  VKECDE

A0A6J1DU55 uncharacterized protein LOC1110231356.6e-2042.2Show/hide
Query:  NTTTLDFRYAKFWFHFPKVPFVCSNRKYAKALANSVGKFEEVETDEEGRHWGETLRVKVRVDINKPLRRGTYLTMRTPESEKWIPITIEKRPDFCYNCGR
        N + L+F    FW H   +P    N+  A  L N++G F +V+ +E+G  WG +LR++V +DI KPLRRG  + +  P    WIPI  E+ PDFCY CG 
Subjt:  NTTTLDFRYAKFWFHFPKVPFVCSNRKYAKALANSVGKFEEVETDEEGRHWGETLRVKVRVDINKPLRRGTYLTMRTPESEKWIPITIEKRPDFCYNCGR

Query:  VGHMVKECD
        +GH   +CD
Subjt:  VGHMVKECD

A0A6P9EGW2 uncharacterized protein LOC1183486451.1e-1735.97Show/hide
Query:  FQKMKITAEEKEGRVRVDEDDLDKDNTTTLDFRYAKFWFHFPKVPFVCSNRKYAKALANSVGKFEEVETDEEGRHWGETLRVKVRVDINKPLRRGTYLTM
        F +  I  +E +GR+ + +          +DF    FW     +PF   N++ ++ L  S GK   V+ DE+GR WGE LRVKV +D++KPL RG  + +
Subjt:  FQKMKITAEEKEGRVRVDEDDLDKDNTTTLDFRYAKFWFHFPKVPFVCSNRKYAKALANSVGKFEEVETDEEGRHWGETLRVKVRVDINKPLRRGTYLTM

Query:  RTPESEKWIPITIEKRPDFCYNCGRVGHMVKECDEQIND
           ++  WIP   EK P FCY CG V H    C    +D
Subjt:  RTPESEKWIPITIEKRPDFCYNCGRVGHMVKECDEQIND

A0A803Q6Y1 Uncharacterized protein4.7e-1838.89Show/hide
Query:  NTTTLDFRYAKFWFHFPKVPFVCSNRKYAKALANSVGKFEEVETDEEGRHWGETLRVKVRVDINKPLRRGTYLTMRTPESEKWIPITIEKRPDFCYNCGR
        N T  D R++ FW     VPF+  +R  AKAL N +G+F EV TD     WG  LR++V++D+ KPLRRG  + ++    + W+    E+ P++C  CG 
Subjt:  NTTTLDFRYAKFWFHFPKVPFVCSNRKYAKALANSVGKFEEVETDEEGRHWGETLRVKVRVDINKPLRRGTYLTMRTPESEKWIPITIEKRPDFCYNCGR

Query:  VGHMVKEC
        +GH  ++C
Subjt:  VGHMVKEC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGGGGACGCGAAGCAAAAGCAATTCCAAAAAATGAAGATAACTGCGGAAGAGAAAGAAGGGAGAGTGAGGGTTGATGAGGACGACTTAGACAAGGACAATACGAC
GACTCTGGACTTCAGGTACGCAAAATTCTGGTTCCACTTTCCCAAGGTTCCTTTTGTGTGCTCAAACAGGAAGTATGCGAAGGCACTAGCAAATTCGGTGGGAAAATTCG
AAGAAGTAGAAACAGATGAAGAAGGACGACATTGGGGGGAAACTCTAAGGGTCAAAGTCCGAGTTGACATAAACAAACCACTGAGAAGAGGTACTTATCTCACAATGAGA
ACCCCAGAGTCGGAGAAATGGATACCAATAACAATAGAGAAGCGGCCGGACTTCTGCTACAACTGCGGAAGGGTAGGCCACATGGTTAAAGAGTGTGATGAGCAAATTAA
CGATGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACGGGGACGCGAAGCAAAAGCAATTCCAAAAAATGAAGATAACTGCGGAAGAGAAAGAAGGGAGAGTGAGGGTTGATGAGGACGACTTAGACAAGGACAATACGAC
GACTCTGGACTTCAGGTACGCAAAATTCTGGTTCCACTTTCCCAAGGTTCCTTTTGTGTGCTCAAACAGGAAGTATGCGAAGGCACTAGCAAATTCGGTGGGAAAATTCG
AAGAAGTAGAAACAGATGAAGAAGGACGACATTGGGGGGAAACTCTAAGGGTCAAAGTCCGAGTTGACATAAACAAACCACTGAGAAGAGGTACTTATCTCACAATGAGA
ACCCCAGAGTCGGAGAAATGGATACCAATAACAATAGAGAAGCGGCCGGACTTCTGCTACAACTGCGGAAGGGTAGGCCACATGGTTAAAGAGTGTGATGAGCAAATTAA
CGATGACTAG
Protein sequenceShow/hide protein sequence
MDGDAKQKQFQKMKITAEEKEGRVRVDEDDLDKDNTTTLDFRYAKFWFHFPKVPFVCSNRKYAKALANSVGKFEEVETDEEGRHWGETLRVKVRVDINKPLRRGTYLTMR
TPESEKWIPITIEKRPDFCYNCGRVGHMVKECDEQINDD