; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0039102 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039102
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr2:35909705..35910253
RNA-Seq ExpressionLag0039102
SyntenyLag0039102
Gene Ontology termsGO:0009987 - cellular process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039074.1 keratin, type I cytoskeletal 10-like [Cucumis melo var. makuwa]9.4e-0752.46Show/hide
Query:  PQALSKALAPVFDLRLRKLEIPVFSG---ANLYEWLHQVERYFEVNRLEDSEKIGAVVLCL
        P A ++   P+F +RL KLE+P+F G    N+ EWLH VERYF VNRL + +K+ A VLCL
Subjt:  PQALSKALAPVFDLRLRKLEIPVFSG---ANLYEWLHQVERYFEVNRLEDSEKIGAVVLCL

KAF7821313.1 Retrotransposable element Tf2 [Senna tora]8.5e-0830.07Show/hide
Query:  MSTRMESRMEALEANLAGQGKEIVAIHNSMDNFPDMALQMKESLSAMVA-----HFESWKAEKIAPAKEQPRRSDEAASATMPTNLVDVATIDPQALSKA
        +STRME R++ +E  +     EI AI   + +  +  L+MK+SL  +       H       +    +E+ R+ +E          +      PQ    +
Subjt:  MSTRMESRMEALEANLAGQGKEIVAIHNSMDNFPDMALQMKESLSAMVA-----HFESWKAEKIAPAKEQPRRSDEAASATMPTNLVDVATIDPQALSKA

Query:  LAPVFDLRLRKLEIPVFSGANLYEWLHQVERYFEVNRLEDSEKIGAVVLCLNG
         A   + R RKLE+P+F G +   WL +VERYF VN +   EK+ AV +C+ G
Subjt:  LAPVFDLRLRKLEIPVFSGANLYEWLHQVERYFEVNRLEDSEKIGAVVLCLNG

KAF7839766.1 putative mitochondrial protein [Senna tora]1.5e-0725Show/hide
Query:  MSTRMESRMEALEANLAGQGKEIVAIHNSMDNFPDMALQMKESLSAMVAHFESWKAEKIAPAKEQPRRSDEAASATMPTNLVDVATIDPQALSKALAPVF
        ++TRME R+E+ E ++     E+ A+   MD   +  L++K+S++         + EK    K+      E +                           
Subjt:  MSTRMESRMEALEANLAGQGKEIVAIHNSMDNFPDMALQMKESLSAMVAHFESWKAEKIAPAKEQPRRSDEAASATMPTNLVDVATIDPQALSKALAPVF

Query:  DLRLRKLEIPVFSGANLYEWLHQVERYFEVNRLEDSEKIGAVVLCLNGVGIEMAETTANR
          +L+KLE+P+F G     WL +VERYF +NR+ + EK+  V +C++G  +   +  + R
Subjt:  DLRLRKLEIPVFSGANLYEWLHQVERYFEVNRLEDSEKIGAVVLCLNGVGIEMAETTANR

XP_015159974.1 PREDICTED: uncharacterized protein LOC102595311 [Solanum tuberosum]7.2e-0729.05Show/hide
Query:  MSTRMESRMEALEANLAGQGKEIVAIHNSMDNFPDMALQMKESLSAMVAHFESWKAEKIAPAKEQPRRSDEAASATMPTNLVDVATIDPQALSKALAPVF
        +STRME R+E LE  +     EI ++ + +    D   +  E  + ++ H +     +  P K+    +D  A  +          + PQ          
Subjt:  MSTRMESRMEALEANLAGQGKEIVAIHNSMDNFPDMALQMKESLSAMVAHFESWKAEKIAPAKEQPRRSDEAASATMPTNLVDVATIDPQALSKALAPVF

Query:  DLRLRKLEIPVFSGANLYEWLHQVERYFEVNRLEDSEKIGAVVLCLNG
        + R R+LE+P+FSG N Y WL++ ERYF  N ++D++K+ A  +CL G
Subjt:  DLRLRKLEIPVFSGANLYEWLHQVERYFEVNRLEDSEKIGAVVLCLNG

XP_038904464.1 uncharacterized protein LOC120090832 [Benincasa hispida]7.2e-0733.54Show/hide
Query:  MSTRMESRMEALEANLAGQGKEIVAIHNSMDNFPDMALQMKES--LSAMVAHFESWKAEKIAPAKEQPRRSD---EAASATMPTNLVD----VATIDPQA
        M  +ME+R+ A+E  L       V + N MD       Q+ ES  ++ + A  E+ + + I P +   ++ +   E  S +    ++D     A  D   
Subjt:  MSTRMESRMEALEANLAGQGKEIVAIHNSMDNFPDMALQMKES--LSAMVAHFESWKAEKIAPAKEQPRRSD---EAASATMPTNLVD----VATIDPQA

Query:  LSKALAPVFDLRLRKLEIPVFS---GANLYEWLHQVERYFEVNRLEDSEKIGAVVLCLNGVGIE
          + L  +FD+RLRKLEIP+F    G +   W H+VERYF VNRL + +KI A +LCL G  +E
Subjt:  LSKALAPVFDLRLRKLEIPVFS---GANLYEWLHQVERYFEVNRLEDSEKIGAVVLCLNGVGIE

TrEMBL top hitse value%identityAlignment
A0A1U7YGG1 uncharacterized protein LOC1042442221.3e-0624.54Show/hide
Query:  MSTRMESRMEALEANLAGQGKEIVAIHNSMDNFPDMALQMKESLSAMVAHFESWKAEKIAPAKEQPRRSDEAASATMPTNLVDVATIDPQALSKALAPVF
        +ST ME R+E LE  +    +EI ++ + +    +   +  E  + ++ H +     +  P KE    ++ + +                   + + P F
Subjt:  MSTRMESRMEALEANLAGQGKEIVAIHNSMDNFPDMALQMKESLSAMVAHFESWKAEKIAPAKEQPRRSDEAASATMPTNLVDVATIDPQALSKALAPVF

Query:  --DLRLRKLEIPVFSGANLYEWLHQVERYFEVNRLEDSEKIGAVVLCLNGVGIEMAETTANRL
          + R R+LE+P+FSG N Y WL++ ERYF  N ++D +K+    +CL G  +   +    R+
Subjt:  --DLRLRKLEIPVFSGANLYEWLHQVERYFEVNRLEDSEKIGAVVLCLNGVGIEMAETTANRL

A0A5A7SMQ7 Ty3/gypsy retrotransposon protein3.0e-0628.74Show/hide
Query:  MSTRMESRMEALEANLAGQGKEIV---AIHNSM----DNFPDMALQMKESLSAMVAHFESWKAEKIAPAKEQPRRSD-EAASATMPTNLVDVATIDPQAL
        + TR+E RME  E  +AG  KE++   AI +++     N   M LQ ++   A++++ E+  A++ A A E+   SD + + AT   N    ++ D    
Subjt:  MSTRMESRMEALEANLAGQGKEIV---AIHNSM----DNFPDMALQMKESLSAMVAHFESWKAEKIAPAKEQPRRSD-EAASATMPTNLVDVATIDPQAL

Query:  SKALAPVFD------LRLRKLEIPVFSGANLYEWLHQVERYFEVNRLEDSEKIGAVVLCLNGVGIEMAETTANR
        S       D       + +K+E+PVF+G +   WL + ERYF++++L +SEK+    +C +G  +    +   R
Subjt:  SKALAPVFD------LRLRKLEIPVFSGANLYEWLHQVERYFEVNRLEDSEKIGAVVLCLNGVGIEMAETTANR

A0A5A7T6F9 Keratin, type I cytoskeletal 10-like4.6e-0752.46Show/hide
Query:  PQALSKALAPVFDLRLRKLEIPVFSG---ANLYEWLHQVERYFEVNRLEDSEKIGAVVLCL
        P A ++   P+F +RL KLE+P+F G    N+ EWLH VERYF VNRL + +K+ A VLCL
Subjt:  PQALSKALAPVFDLRLRKLEIPVFSG---ANLYEWLHQVERYFEVNRLEDSEKIGAVVLCL

A0A5D3BU88 Ty3/gypsy retrotransposon protein3.0e-0628.74Show/hide
Query:  MSTRMESRMEALEANLAGQGKEIV---AIHNSM----DNFPDMALQMKESLSAMVAHFESWKAEKIAPAKEQPRRSD-EAASATMPTNLVDVATIDPQAL
        + TR+E RME  E  +AG  KE++   AI +++     N   M LQ ++   A++++ E+  A++ A A E+   SD + + AT   N    ++ D    
Subjt:  MSTRMESRMEALEANLAGQGKEIV---AIHNSM----DNFPDMALQMKESLSAMVAHFESWKAEKIAPAKEQPRRSD-EAASATMPTNLVDVATIDPQAL

Query:  SKALAPVFD------LRLRKLEIPVFSGANLYEWLHQVERYFEVNRLEDSEKIGAVVLCLNGVGIEMAETTANR
        S       D       + +K+E+PVF+G +   WL + ERYF++++L +SEK+    +C +G  +    +   R
Subjt:  SKALAPVFD------LRLRKLEIPVFSGANLYEWLHQVERYFEVNRLEDSEKIGAVVLCLNGVGIEMAETTANR

A0A5D3E1V9 Ty3/gypsy retrotransposon protein3.0e-0628.74Show/hide
Query:  MSTRMESRMEALEANLAGQGKEIV---AIHNSM----DNFPDMALQMKESLSAMVAHFESWKAEKIAPAKEQPRRSD-EAASATMPTNLVDVATIDPQAL
        + TR+E RME  E  +AG  KE++   AI +++     N   M LQ ++   A++++ E+  A++ A A E+   SD + + AT   N    ++ D    
Subjt:  MSTRMESRMEALEANLAGQGKEIV---AIHNSM----DNFPDMALQMKESLSAMVAHFESWKAEKIAPAKEQPRRSD-EAASATMPTNLVDVATIDPQAL

Query:  SKALAPVFD------LRLRKLEIPVFSGANLYEWLHQVERYFEVNRLEDSEKIGAVVLCLNGVGIEMAETTANR
        S       D       + +K+E+PVF+G +   WL + ERYF++++L +SEK+    +C +G  +    +   R
Subjt:  SKALAPVFD------LRLRKLEIPVFSGANLYEWLHQVERYFEVNRLEDSEKIGAVVLCLNGVGIEMAETTANR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G67020.1 unknown protein3.7e-0946.94Show/hide
Query:  LRKLEIPVFSGANLYEWLHQVERYFEVNRLEDSEKIGAVVLCLNGVGIE
        +R++E+PVF G+ +YEW  +VER+F V R +DS+K+  V L L GV ++
Subjt:  LRKLEIPVFSGANLYEWLHQVERYFEVNRLEDSEKIGAVVLCLNGVGIE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGACTCGTATGGAATCACGAATGGAAGCTTTGGAAGCAAACCTTGCGGGTCAGGGAAAAGAAATTGTTGCAATTCACAACTCGATGGACAACTTCCCGGACATGGC
GCTACAGATGAAAGAGAGTTTATCCGCCATGGTTGCACACTTCGAAAGCTGGAAAGCTGAGAAGATCGCCCCGGCGAAAGAACAACCGAGACGTTCGGATGAAGCGGCAA
GTGCCACAATGCCCACTAATCTGGTGGACGTCGCGACGATTGATCCACAAGCGCTATCGAAGGCGTTGGCTCCTGTCTTCGACCTTCGGCTTCGAAAATTAGAAATTCCG
GTATTCTCCGGCGCAAACTTGTACGAATGGCTCCACCAAGTCGAGCGATACTTTGAGGTGAACCGGTTGGAAGATTCAGAAAAAATCGGAGCGGTCGTTTTGTGCCTCAA
TGGGGTCGGCATTGAAATGGCAGAAACGACGGCCAATCGGCTGTTGGGAAGAATTCTGGCGACTCCTCCTAAAGCGATTCCTCCCGACAAAGGAGGGGAGCCTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGACTCGTATGGAATCACGAATGGAAGCTTTGGAAGCAAACCTTGCGGGTCAGGGAAAAGAAATTGTTGCAATTCACAACTCGATGGACAACTTCCCGGACATGGC
GCTACAGATGAAAGAGAGTTTATCCGCCATGGTTGCACACTTCGAAAGCTGGAAAGCTGAGAAGATCGCCCCGGCGAAAGAACAACCGAGACGTTCGGATGAAGCGGCAA
GTGCCACAATGCCCACTAATCTGGTGGACGTCGCGACGATTGATCCACAAGCGCTATCGAAGGCGTTGGCTCCTGTCTTCGACCTTCGGCTTCGAAAATTAGAAATTCCG
GTATTCTCCGGCGCAAACTTGTACGAATGGCTCCACCAAGTCGAGCGATACTTTGAGGTGAACCGGTTGGAAGATTCAGAAAAAATCGGAGCGGTCGTTTTGTGCCTCAA
TGGGGTCGGCATTGAAATGGCAGAAACGACGGCCAATCGGCTGTTGGGAAGAATTCTGGCGACTCCTCCTAAAGCGATTCCTCCCGACAAAGGAGGGGAGCCTTCATGA
Protein sequenceShow/hide protein sequence
MSTRMESRMEALEANLAGQGKEIVAIHNSMDNFPDMALQMKESLSAMVAHFESWKAEKIAPAKEQPRRSDEAASATMPTNLVDVATIDPQALSKALAPVFDLRLRKLEIP
VFSGANLYEWLHQVERYFEVNRLEDSEKIGAVVLCLNGVGIEMAETTANRLLGRILATPPKAIPPDKGGEPS