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Lag0039105 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039105
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr2:36085838..36086343
RNA-Seq ExpressionLag0039105
SyntenyLag0039105
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038979.1 uncharacterized protein E6C27_scaffold84G00600 [Cucumis melo var. makuwa]1.1e-0450Show/hide
Query:  MIGSAPTNFSDIMMIGERIEYGVKHGRISDDAIE--------SSIEDEEDCSKDQQVQHNPQPT
        M+GSA TNFSD++ IGERIE+GVK+GRISD A E           E+  + S  Q+V H   PT
Subjt:  MIGSAPTNFSDIMMIGERIEYGVKHGRISDDAIE--------SSIEDEEDCSKDQQVQHNPQPT
KAA0046608.1 uncharacterized protein E6C27_scaffold114G001540 [Cucumis melo var. makuwa]2.5e-0471.43Show/hide
Query:  MIGSAPTNFSDIMMIGERIEYGVKHGRISDDAIES
        M+GSA TNFSD+++IGERIE+GVK+GRISD A E+
Subjt:  MIGSAPTNFSDIMMIGERIEYGVKHGRISDDAIES
KAA0054570.1 uncharacterized protein E6C27_scaffold24G003640 [Cucumis melo var. makuwa]1.1e-0450Show/hide
Query:  MIGSAPTNFSDIMMIGERIEYGVKHGRISDDAIE--------SSIEDEEDCSKDQQVQHNPQPT
        M+GSA TNFSD++ IGERIE+GVK+GRISD A E           E+  + S  Q+V H   PT
Subjt:  MIGSAPTNFSDIMMIGERIEYGVKHGRISDDAIE--------SSIEDEEDCSKDQQVQHNPQPT
KAA0060308.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]1.1e-0450Show/hide
Query:  MIGSAPTNFSDIMMIGERIEYGVKHGRISDDAIE--------SSIEDEEDCSKDQQVQHNPQPT
        M+GSA TNFSD++ IGERIE+GVK+GRISD A E           E+  + S  Q+V H   PT
Subjt:  MIGSAPTNFSDIMMIGERIEYGVKHGRISDDAIE--------SSIEDEEDCSKDQQVQHNPQPT
XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]3.3e-0454.55Show/hide
Query:  MIGSAPTNFSDIMMIGERIEYGVKHGRISDDAIESSIEDEEDCSKDQQVQHNPQP
        MIGSA TNFSDIM IGERIEYGV+H RI+  A E     +   SK ++ +  P P
Subjt:  MIGSAPTNFSDIMMIGERIEYGVKHGRISDDAIESSIEDEEDCSKDQQVQHNPQP
TrEMBL top hitse value%identityAlignment
A0A5A7TCG9 Uncharacterized protein5.5e-0550Show/hide
Query:  MIGSAPTNFSDIMMIGERIEYGVKHGRISDDAIE--------SSIEDEEDCSKDQQVQHNPQPT
        M+GSA TNFSD++ IGERIE+GVK+GRISD A E           E+  + S  Q+V H   PT
Subjt:  MIGSAPTNFSDIMMIGERIEYGVKHGRISDDAIE--------SSIEDEEDCSKDQQVQHNPQPT
A0A5A7TUT4 Uncharacterized protein1.2e-0471.43Show/hide
Query:  MIGSAPTNFSDIMMIGERIEYGVKHGRISDDAIES
        M+GSA TNFSD+++IGERIE+GVK+GRISD A E+
Subjt:  MIGSAPTNFSDIMMIGERIEYGVKHGRISDDAIES
A0A5A7VBN6 Retrotrans_gag domain-containing protein1.6e-0446.88Show/hide
Query:  MIGSAPTNFSDIMMIGERIEYGVKHGRISDDAIE--------SSIEDEEDCSKDQQVQHNPQPT
        M+GSA TNFSD++ +GE+IE+GVK+GRISD A E           E+  + S  Q+V H   PT
Subjt:  MIGSAPTNFSDIMMIGERIEYGVKHGRISDDAIE--------SSIEDEEDCSKDQQVQHNPQPT
A0A5D3D9Y2 Uncharacterized protein5.5e-0550Show/hide
Query:  MIGSAPTNFSDIMMIGERIEYGVKHGRISDDAIE--------SSIEDEEDCSKDQQVQHNPQPT
        M+GSA TNFSD++ IGERIE+GVK+GRISD A E           E+  + S  Q+V H   PT
Subjt:  MIGSAPTNFSDIMMIGERIEYGVKHGRISDDAIE--------SSIEDEEDCSKDQQVQHNPQPT
A0A5D3DEF4 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein5.5e-0550Show/hide
Query:  MIGSAPTNFSDIMMIGERIEYGVKHGRISDDAIE--------SSIEDEEDCSKDQQVQHNPQPT
        M+GSA TNFSD++ IGERIE+GVK+GRISD A E           E+  + S  Q+V H   PT
Subjt:  MIGSAPTNFSDIMMIGERIEYGVKHGRISDDAIE--------SSIEDEEDCSKDQQVQHNPQPT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGGAAGTGCACCCACTAATTTTTCAGACATCATGATGATTGGAGAAAGAATAGAATACGGGGTTAAGCATGGAAGGATATCCGATGATGCAATTGAATCATCAAT
TGAAGACGAAGAAGACTGCTCAAAGGATCAACAAGTCCAACATAATCCACAACCAACAAGGTTGTTGTATCTTACAATCATAATGGTAAGAAGCAGCAAAGGTGGTGAAT
ATTCATCCATACCAATTGCATTTATTGAGGCTTCGTCGTGCTTATTTAGGAAAAACCTATTGGTGCTCATGCTTACAATACTAACTCAATCTCTCCATACTCAAAGTAGT
GTGATCCCAATGTCATGGAAGAGCTTTAGGCCACGCTTGAAAGAAACGAAGAATCATGTGCAAGATCGAATGAAGGTAGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATAGGAAGTGCACCCACTAATTTTTCAGACATCATGATGATTGGAGAAAGAATAGAATACGGGGTTAAGCATGGAAGGATATCCGATGATGCAATTGAATCATCAAT
TGAAGACGAAGAAGACTGCTCAAAGGATCAACAAGTCCAACATAATCCACAACCAACAAGGTTGTTGTATCTTACAATCATAATGGTAAGAAGCAGCAAAGGTGGTGAAT
ATTCATCCATACCAATTGCATTTATTGAGGCTTCGTCGTGCTTATTTAGGAAAAACCTATTGGTGCTCATGCTTACAATACTAACTCAATCTCTCCATACTCAAAGTAGT
GTGATCCCAATGTCATGGAAGAGCTTTAGGCCACGCTTGAAAGAAACGAAGAATCATGTGCAAGATCGAATGAAGGTAGTTTAG
Protein sequenceShow/hide protein sequence
MIGSAPTNFSDIMMIGERIEYGVKHGRISDDAIESSIEDEEDCSKDQQVQHNPQPTRLLYLTIIMVRSSKGGEYSSIPIAFIEASSCLFRKNLLVLMLTILTQSLHTQSS
VIPMSWKSFRPRLKETKNHVQDRMKVV