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Lag0039171 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039171
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr2:37843185..37843580
RNA-Seq ExpressionLag0039171
SyntenyLag0039171
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]6.8e-2373.2Show/hide
Query:  MSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTLAVGKNDKGKAVMHEDQP-RHSASVASLSVQQLQDMIMNSIRAQ
        MSVMMADV  +  MAEMERK+NLLMK VDERD EIA LK Q+Q RETAESSQT  V  +DKGK V+ E+QP + S SVASLSVQQLQDMI NSIRAQ
Subjt:  MSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTLAVGKNDKGKAVMHEDQP-RHSASVASLSVQQLQDMIMNSIRAQ

XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]2.6e-2272.16Show/hide
Query:  MSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTLAVGKNDKGKAVMHEDQP-RHSASVASLSVQQLQDMIMNSIRAQ
        MSVMMADV  +  MAEMERK+NLLMK VDERD EIA LK Q+Q RETAESSQT  V  +DKGK V+ E+QP + S SVASLSVQQLQDMI +SIRAQ
Subjt:  MSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTLAVGKNDKGKAVMHEDQP-RHSASVASLSVQQLQDMIMNSIRAQ

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]2.6e-2272.16Show/hide
Query:  MSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTLAVGKNDKGKAVMHEDQP-RHSASVASLSVQQLQDMIMNSIRAQ
        MSVMMADV  +  MAEMERK+NLLMK VDERD EIA LK Q+Q RETAESSQT  V  +DKGK V+ E+QP + S SVASLSVQQLQDMI +SIRAQ
Subjt:  MSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTLAVGKNDKGKAVMHEDQP-RHSASVASLSVQQLQDMIMNSIRAQ

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]2.6e-2272.16Show/hide
Query:  MSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTLAVGKNDKGKAVMHEDQP-RHSASVASLSVQQLQDMIMNSIRAQ
        MSVMMADV  +  MAEMERK+NLLMK VDERD EIA LK Q+Q RETAESSQT  V  +DKGK V+ E+QP + S SVASLSVQQLQDMI +SIRAQ
Subjt:  MSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTLAVGKNDKGKAVMHEDQP-RHSASVASLSVQQLQDMIMNSIRAQ

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]6.8e-2373.2Show/hide
Query:  MSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTLAVGKNDKGKAVMHEDQP-RHSASVASLSVQQLQDMIMNSIRAQ
        MSVMMADV  +  MAEMERK+NLLMK VDERD EIA LK Q+Q RETAESSQT  V  +DKGK V+ E+QP + S SVASLSVQQLQDMI NSIRAQ
Subjt:  MSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTLAVGKNDKGKAVMHEDQP-RHSASVASLSVQQLQDMIMNSIRAQ

TrEMBL top hitse value%identityAlignment
A0A5A7T1J1 Ty3-gypsy retrotransposon protein2.3e-2162.89Show/hide
Query:  MSVMMADVDQDE-RMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTLAVGKNDKGKAVMHEDQPRHSASVASLSVQQLQDMIMNSIRAQ
        MSVM+ +VD  E RMAE+E+K+N+LMK V+ERD EIA+LKN +++R+TAESS    V   DKGKAVM E QP++S S+ASLSVQQLQ+MI NSI+ Q
Subjt:  MSVMMADVDQDE-RMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTLAVGKNDKGKAVMHEDQPRHSASVASLSVQQLQDMIMNSIRAQ

A0A5A7TZU9 Ribonuclease H4.0e-2160.82Show/hide
Query:  MSVMMADVD-QDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTLAVGKNDKGKAVMHEDQPRHSASVASLSVQQLQDMIMNSIRAQ
        MSVM+ DVD  ++RMAE+E+K+N+LMKAV+ERD EIA LKN +++R+ AESS T  +   +KGKA+M E QP++S S+ASLSVQQLQ+MI NSI+ Q
Subjt:  MSVMMADVD-QDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTLAVGKNDKGKAVMHEDQPRHSASVASLSVQQLQDMIMNSIRAQ

A0A5A7VDN4 Ty3-gypsy retrotransposon protein4.0e-2167.01Show/hide
Query:  MSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTLAVGKNDKGKAVMHEDQP-RHSASVASLSVQQLQDMIMNSIRAQ
        MSVMMAD+  +  MAEMERK+N LMKAV+ERD EI  L+ Q++ RETAESSQT  V   DKGK V+ ++QP + S SVASLSVQQLQDMI NSIRAQ
Subjt:  MSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTLAVGKNDKGKAVMHEDQP-RHSASVASLSVQQLQDMIMNSIRAQ

A0A5D3BY54 Ty3-gypsy retrotransposon protein2.3e-2168.04Show/hide
Query:  MSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTLAVGKNDKGKAVMHEDQP-RHSASVASLSVQQLQDMIMNSIRAQ
        MSVMMAD+  +  MAEMERK+N LMKAV+ERD EI  L+ Q++ RETAESSQT  V   DKGK V+ E+QP + S SVASLSVQQLQDMI NSIRAQ
Subjt:  MSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTLAVGKNDKGKAVMHEDQP-RHSASVASLSVQQLQDMIMNSIRAQ

A0A5D3CRB1 Ty3-gypsy retrotransposon protein2.3e-2162.89Show/hide
Query:  MSVMMADVDQDE-RMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTLAVGKNDKGKAVMHEDQPRHSASVASLSVQQLQDMIMNSIRAQ
        MSVM+ +VD  E RMAE+E+K+N+LMK V+ERD EIA+LKN +++R+TAESS    V   DKGKAVM E QP++S S+ASLSVQQLQ+MI NSI+ Q
Subjt:  MSVMMADVDQDE-RMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTLAVGKNDKGKAVMHEDQPRHSASVASLSVQQLQDMIMNSIRAQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCAGTTGATGAAAGAGATCTTGAGATTGCCTA
TTTGAAGAACCAGCTGCAAAACCGAGAAACGGCTGAGTCTAGCCAGACCCTTGCTGTAGGAAAGAATGATAAGGGGAAGGCTGTCATGCATGAGGACCAGCCGCGACACT
CCGCGTCAGTTGCCTCTTTGTCCGTCCAACAACTGCAAGACATGATCATGAATTCCATCAGGGCTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCAGTTGATGAAAGAGATCTTGAGATTGCCTA
TTTGAAGAACCAGCTGCAAAACCGAGAAACGGCTGAGTCTAGCCAGACCCTTGCTGTAGGAAAGAATGATAAGGGGAAGGCTGTCATGCATGAGGACCAGCCGCGACACT
CCGCGTCAGTTGCCTCTTTGTCCGTCCAACAACTGCAAGACATGATCATGAATTCCATCAGGGCTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATAA
Protein sequenceShow/hide protein sequence
MSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNRETAESSQTLAVGKNDKGKAVMHEDQPRHSASVASLSVQQLQDMIMNSIRAQXXXXXXXXXXXXXX
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