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Lag0039252 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039252
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr2:39919811..39920528
RNA-Seq ExpressionLag0039252
SyntenyLag0039252
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEC84982.1 hypothetical protein OsI_32248 [Oryza sativa Indica Group]9.2e-4039.57Show/hide
Query:  KVDMSKTYDRVEWVFLEKVKLKMGFASGWVELISLCISYVRFSFNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGLKIARYG
        K+DMSK YDRVEW FLEK+ +++GFA GWV+LI  C+S V +   VN      ++PSRGLRQG P+S Y+FL+CAEG S +L  A+E   + G+K+ +  
Subjt:  KVDMSKTYDRVEWVFLEKVKLKMGFASGWVELISLCISYVRFSFNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGLKIARYG

Query:  PAISHLLFADDSLLFFRVNERDVVAVQDILNRYERVSG-------TSVFYA-----SEQNELIEFHQGSSLIANSRVEG---------------------
        P++SHLLFADDSLL F+VNER    +Q++LN YE  SG       +S+ ++     +++  ++E    S+   N +  G                     
Subjt:  PAISHLLFADDSLLFFRVNERDVVAVQDILNRYERVSG-------TSVFYA-----SEQNELIEFHQGSSLIANSRVEG---------------------

Query:  QAILCW--------GREVLLKSVVQAIPCYWMNCF
        + I  W        G+++L+K+V QAIP + M+CF
Subjt:  QAILCW--------GREVLLKSVVQAIPCYWMNCF

KAA3455898.1 reverse transcriptase [Gossypium australe]4.9e-4143.46Show/hide
Query:  KVDMSKTYDRVEWVFLEKVKLKMGFASGWVELISLCISYVRFSFNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGLKIARYG
        K+DMSK YDRVEW +LEKV LKMGF   WV+LI  CIS V ++ N+NR R     PSRGLRQG PLS Y+FL+C+EGLS ++R A E  +I+G+K +R G
Subjt:  KVDMSKTYDRVEWVFLEKVKLKMGFASGWVELISLCISYVRFSFNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGLKIARYG

Query:  PAISHLLFADDSLLFFRVNERDVVAVQDILNRYERVSG-------TSVFYASEQNELIEFHQGSSLIANSRVE---------------------------
        P ISHLLFADD LLF    +     +++IL +Y+R SG       +++FY+S  N L E  + +S +   R                             
Subjt:  PAISHLLFADDSLLFFRVNERDVVAVQDILNRYERVSG-------TSVFYASEQNELIEFHQGSSLIANSRVE---------------------------

Query:  -GQAILCW--------GREVLLKSVVQAIPCYWMNCF
          Q I  W        G+EV +KSV+QAIP Y M+CF
Subjt:  -GQAILCW--------GREVLLKSVVQAIPCYWMNCF

XP_017250619.1 PREDICTED: uncharacterized protein LOC108221234 [Daucus carota subsp. sativus]3.2e-4042.13Show/hide
Query:  KVDMSKTYDRVEWVFLEKVKLKMGFASGWVELISLCISYVRFSFNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGLKIARYG
        K+DMSK YDRVEW+F+EK+  K+GF+  WV+ I  C++ V +SF VN    G V PSRGLRQG PLS Y+FL+CAEG S +LR A+    I GLKIAR  
Subjt:  KVDMSKTYDRVEWVFLEKVKLKMGFASGWVELISLCISYVRFSFNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGLKIARYG

Query:  PAISHLLFADDSLLFFRVNERDVVAVQDILNRYERVSG--------------------TSVFYAS---EQNELIEFHQGSSLIA--NSRVEGQAIL----
        P+ISHL FADDSLLF + + R + ++Q+I + Y   SG                     S F  S   +  E IE + G  ++   N ++  ++I     
Subjt:  PAISHLLFADDSLLFFRVNERDVVAVQDILNRYERVSG--------------------TSVFYAS---EQNELIEFHQGSSLIA--NSRVEGQAIL----

Query:  ----CW--------GREVLLKSVVQAIPCYWMNCF
             W        G+E+LLK+V+QA+P Y+M+CF
Subjt:  ----CW--------GREVLLKSVVQAIPCYWMNCF

XP_023880912.1 uncharacterized protein LOC111993298 [Quercus suber]7.1e-4043.83Show/hide
Query:  KVDMSKTYDRVEWVFLEKVKLKMGFASGWVELISLCISYVRFSFNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGLKIARYG
        K+DMSK YDRVEW +L K+  ++GF   WV L+  CIS V +S  VN    GD+ PSRGLRQG PLS Y+FLLC+EGL+ ML+ A  +  I+G  + + G
Subjt:  KVDMSKTYDRVEWVFLEKVKLKMGFASGWVELISLCISYVRFSFNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGLKIARYG

Query:  PAISHLLFADDSLLFFRVNERDVVAVQDILNRYERVSG-------TSVFYASEQNE-----LIEFHQ-----------------GSSLIAN---------
        P ISHL FADDSLLF R +  D+ A+QDIL+ YE+ SG       T++F++   NE     L++F Q                 G +  A+         
Subjt:  PAISHLLFADDSLLFFRVNERDVVAVQDILNRYERVSG-------TSVFYASEQNE-----LIEFHQ-----------------GSSLIAN---------

Query:  SRVEG---QAILCWGREVLLKSVVQAIPCYWMNCF
        S+++G   + +   GREVLLK+VVQAIP + M CF
Subjt:  SRVEG---QAILCWGREVLLKSVVQAIPCYWMNCF

XP_023909336.1 uncharacterized protein LOC112020997 [Quercus suber]2.1e-3941.28Show/hide
Query:  KVDMSKTYDRVEWVFLEKVKLKMGFASGWVELISLCISYVRFSFNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGLKIARYG
        K+DMSK YDRVEW FLE +  K+GFA  W++LI  CIS V FS  +N    G + P RGLRQG PLS Y+FLLCAEGL  +++ A  + +I G+ + R G
Subjt:  KVDMSKTYDRVEWVFLEKVKLKMGFASGWVELISLCISYVRFSFNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGLKIARYG

Query:  PAISHLLFADDSLLFFRVNERDVVAVQDILNRYERVSG-------TSVFYASEQNELIEFHQGSSL-----------------IANSRVEG---------
        P ++HLLFADDSLL  + N R+  +V ++L +YER SG       T +F++S  N+       SSL                 +   + +          
Subjt:  PAISHLLFADDSLLFFRVNERDVVAVQDILNRYERVSG-------TSVFYASEQNELIEFHQGSSL-----------------IANSRVEG---------

Query:  QAILCW--------GREVLLKSVVQAIPCYWMNCF
        Q I  W        G+EVL+KS++QA+P Y MNCF
Subjt:  QAILCW--------GREVLLKSVVQAIPCYWMNCF

TrEMBL top hitse value%identityAlignment
A0A2N9F1J2 Phorbol-ester/DAG-type domain-containing protein7.3e-4347.09Show/hide
Query:  KVDMSKTYDRVEWVFLEKVKLKMGFASGWVELISLCISYVRFSFNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGLKIARYG
        K+DMSK YDRVEW FL++V L+MGF S WV L+  CI+ V +S  +N    G + PSRGLRQG P+S Y+FLLCAEGL+ +L  A     I G+ I R G
Subjt:  KVDMSKTYDRVEWVFLEKVKLKMGFASGWVELISLCISYVRFSFNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGLKIARYG

Query:  PAISHLLFADDSLLFFRVNERDVVAVQDILNRYERVSG-------TSVFYASEQNELIEFH--QGSSLIANSRVEG---QAILCWGREVLLKSVVQAIPC
        P ++HL FADDSLLF R  + +   +QDILN YE+ SG       T++F++   ++  + H  + S     S+V+G   + +   GRE+L+ +VVQAIP 
Subjt:  PAISHLLFADDSLLFFRVNERDVVAVQDILNRYERVSG-------TSVFYASEQNELIEFH--QGSSLIANSRVEG---QAILCWGREVLLKSVVQAIPC

Query:  YWMNCF
        Y MNCF
Subjt:  YWMNCF

A0A2N9G3M5 Reverse transcriptase domain-containing protein5.3e-4145.63Show/hide
Query:  KVDMSKTYDRVEWVFLEKVKLKMGFASGWVELISLCISYVRFSFNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGLKIARYG
        K+DMSK YDRVEW FL++V ++MGF   W+ LI  CIS V +S  +N    G ++P+RG+RQG P+S Y+FLLCAEGL+ +++ AK    I G+ + R G
Subjt:  KVDMSKTYDRVEWVFLEKVKLKMGFASGWVELISLCISYVRFSFNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGLKIARYG

Query:  PAISHLLFADDSLLFFRVNERDVVAVQDILNRYERVSG-------TSVFY-----ASEQNELIEFHQGSSLIANSRVEGQAILCWGREVLLKSVVQAIPC
        P I++L FADDSLLF R    +   +QDIL  YE+ SG       T++F+     ++ Q EL +     S+    +  G   L  GRE+L+K+VVQAIP 
Subjt:  PAISHLLFADDSLLFFRVNERDVVAVQDILNRYERVSG-------TSVFY-----ASEQNELIEFHQGSSLIANSRVEGQAILCWGREVLLKSVVQAIPC

Query:  YWMNCF
        Y MNCF
Subjt:  YWMNCF

A0A2N9GET2 Reverse transcriptase domain-containing protein4.0e-4148.73Show/hide
Query:  KVDMSKTYDRVEWVFLEKVKLKMGFASGWVELISLCISYVRFSFNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGLKIARYG
        K+DMSK YDRVEW +L+ VK +MGF   WV L+  CIS V +S  V+    G + PSRGLRQG PLS Y+FLLCAEGL  +++ AK    ++G+ I+R G
Subjt:  KVDMSKTYDRVEWVFLEKVKLKMGFASGWVELISLCISYVRFSFNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGLKIARYG

Query:  PAISHLLFADDSLLFFRVNERDVVAVQDILNRYERVSGTSVFYASEQNELIEFHQGSSLIANSRVEG---QAILCWGREVLLKSVVQAIPCYWMNCF
        P I+HL FADDSLLF +    DV  +QDILN YE  SG  +   + Q   I F + +     + ++G   + +   GREVL+KSV QAIP Y M+CF
Subjt:  PAISHLLFADDSLLFFRVNERDVVAVQDILNRYERVSGTSVFYASEQNELIEFHQGSSLIANSRVEG---QAILCWGREVLLKSVVQAIPCYWMNCF

A0A5B6UF59 Reverse transcriptase2.4e-4143.46Show/hide
Query:  KVDMSKTYDRVEWVFLEKVKLKMGFASGWVELISLCISYVRFSFNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGLKIARYG
        K+DMSK YDRVEW +LEKV LKMGF   WV+LI  CIS V ++ N+NR R     PSRGLRQG PLS Y+FL+C+EGLS ++R A E  +I+G+K +R G
Subjt:  KVDMSKTYDRVEWVFLEKVKLKMGFASGWVELISLCISYVRFSFNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGLKIARYG

Query:  PAISHLLFADDSLLFFRVNERDVVAVQDILNRYERVSG-------TSVFYASEQNELIEFHQGSSLIANSRVE---------------------------
        P ISHLLFADD LLF    +     +++IL +Y+R SG       +++FY+S  N L E  + +S +   R                             
Subjt:  PAISHLLFADDSLLFFRVNERDVVAVQDILNRYERVSG-------TSVFYASEQNELIEFHQGSSLIANSRVE---------------------------

Query:  -GQAILCW--------GREVLLKSVVQAIPCYWMNCF
          Q I  W        G+EV +KSV+QAIP Y M+CF
Subjt:  -GQAILCW--------GREVLLKSVVQAIPCYWMNCF

A0A803QH76 Uncharacterized protein2.4e-4148.51Show/hide
Query:  MGLA--KVDMSKTYDRVEWVFLEKVKLKMGFASGWVELISLCISYVRFSFNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGL
        MG A  K+DMSK +DRVEW FL +V LKMGF S WV L+  C++    SFN+N    G V P RGLRQG PLS Y+FL+C+EGLS +L+  +    +KGL
Subjt:  MGLA--KVDMSKTYDRVEWVFLEKVKLKMGFASGWVELISLCISYVRFSFNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGL

Query:  KIARYGPAISHLLFADDSLLFFRVNERDVVAVQDILNRYERVSGTSVFYASEQNELIEFHQGSSLIANSRVEG--QAILCWGREVLLKSVVQAIPCYWMN
         +AR  P ISHLLFADDSLLF +  E    A+  +L+ Y R SG  +   + +  ++ F   +S     R     Q  +C GREVLLK+VVQ+IP Y M+
Subjt:  KIARYGPAISHLLFADDSLLFFRVNERDVVAVQDILNRYERVSGTSVFYASEQNELIEFHQGSSLIANSRVEG--QAILCWGREVLLKSVVQAIPCYWMN

Query:  CF
        CF
Subjt:  CF

SwissProt top hitse value%identityAlignment
P11369 LINE-1 retrotransposable element ORF2 protein1.9e-0825.87Show/hide
Query:  LAKVDMSKTYDRVEWVFLEKVKLKMGFASGWVELISLCISYVRFSFNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGLKIAR
        +  +D  K +D+++  F+ KV  + G    ++ +I    S    +  VN  +   +    G RQG PLS Y+F +  E L+   R  ++ K IKG++I +
Subjt:  LAKVDMSKTYDRVEWVFLEKVKLKMGFASGWVELISLCISYVRFSFNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGLKIAR

Query:  YGPAISHLLFADDSLLFFRVNERDVVAVQDILNRYERVSGTSV
            IS  L ADD +++    +     + +++N +  V G  +
Subjt:  YGPAISHLLFADDSLLFFRVNERDVVAVQDILNRYERVSGTSV

P14381 Transposon TX1 uncharacterized 149 kDa protein7.7e-0523.35Show/hide
Query:  MGLAKVDMSKTYDRVEWVFLEKVKLKMGFASGWVELISLCISYVRFSFNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGLKI
        +    +D  K +DRV+  +L        F   +V  +    +       +N      +   RG+RQG PLS  ++ L  E   C+LR     K + GL +
Subjt:  MGLAKVDMSKTYDRVEWVFLEKVKLKMGFASGWVELISLCISYVRFSFNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGLKI

Query:  ARYGPAISHLLFADDSLLFFRVNERDVVAVQDILNRYERVSGTSVFYASEQNELIEFHQGSSLIANS
              +    +ADD +L            QD+++  ER       YA+  +  I + + S L+  S
Subjt:  ARYGPAISHLLFADDSLLFFRVNERDVVAVQDILNRYERVSGTSVFYASEQNELIEFHQGSSLIANS

P92555 Uncharacterized mitochondrial protein AtMg012504.5e-1350.72Show/hide
Query:  FNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGLKIARYGPAISHLLFADDS
        F +N    G V PSRGLRQG PLS Y+F+LC E LS + R A+E   + G++++   P I+HLLFADD+
Subjt:  FNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGLKIARYGPAISHLLFADDS

Arabidopsis top hitse value%identityAlignment
ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)3.2e-1450.72Show/hide
Query:  FNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGLKIARYGPAISHLLFADDS
        F +N    G V PSRGLRQG PLS Y+F+LC E LS + R A+E   + G++++   P I+HLLFADD+
Subjt:  FNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGLKIARYGPAISHLLFADDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCTCGCTAAAGTTGACATGAGCAAGACCTACGATAGAGTTGAATGGGTCTTTTTGGAGAAGGTGAAGCTGAAGATGGGTTTTGCATCGGGTTGGGTGGAGCTGAT
TTCTCTATGTATATCATATGTTCGGTTTTCTTTTAATGTAAATAGAGTAAGGTGCGGGGATGTTGTTCCGAGCAGAGGTTTGCGGCAAGGGGGTCCGCTATCTTCGTATA
TGTTTCTTCTATGCGCTGAGGGGTTATCTTGTATGCTACGTGGGGCTAAGGAGGACAAGTCCATTAAGGGACTGAAGATAGCTCGGTATGGCCCTGCTATCTCACATCTG
TTATTTGCAGACGATAGCTTGCTATTCTTTCGGGTTAATGAGAGAGATGTTGTGGCGGTTCAGGACATCCTTAACCGCTATGAACGAGTGTCGGGGACTTCCGTCTTTTA
TGCCTCGGAACAAAACGAGCTCATTGAGTTTCATCAAGGATCGAGTCTGATAGCAAATTCAAGGGTGGAAGGGCAAGCTATTCTCTGTTGGGGTAGGGAAGTACTCCTAA
AATCTGTTGTGCAGGCGATCCCTTGCTACTGGATGAATTGCTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTCTCGCTAAAGTTGACATGAGCAAGACCTACGATAGAGTTGAATGGGTCTTTTTGGAGAAGGTGAAGCTGAAGATGGGTTTTGCATCGGGTTGGGTGGAGCTGAT
TTCTCTATGTATATCATATGTTCGGTTTTCTTTTAATGTAAATAGAGTAAGGTGCGGGGATGTTGTTCCGAGCAGAGGTTTGCGGCAAGGGGGTCCGCTATCTTCGTATA
TGTTTCTTCTATGCGCTGAGGGGTTATCTTGTATGCTACGTGGGGCTAAGGAGGACAAGTCCATTAAGGGACTGAAGATAGCTCGGTATGGCCCTGCTATCTCACATCTG
TTATTTGCAGACGATAGCTTGCTATTCTTTCGGGTTAATGAGAGAGATGTTGTGGCGGTTCAGGACATCCTTAACCGCTATGAACGAGTGTCGGGGACTTCCGTCTTTTA
TGCCTCGGAACAAAACGAGCTCATTGAGTTTCATCAAGGATCGAGTCTGATAGCAAATTCAAGGGTGGAAGGGCAAGCTATTCTCTGTTGGGGTAGGGAAGTACTCCTAA
AATCTGTTGTGCAGGCGATCCCTTGCTACTGGATGAATTGCTTCTGA
Protein sequenceShow/hide protein sequence
MGLAKVDMSKTYDRVEWVFLEKVKLKMGFASGWVELISLCISYVRFSFNVNRVRCGDVVPSRGLRQGGPLSSYMFLLCAEGLSCMLRGAKEDKSIKGLKIARYGPAISHL
LFADDSLLFFRVNERDVVAVQDILNRYERVSGTSVFYASEQNELIEFHQGSSLIANSRVEGQAILCWGREVLLKSVVQAIPCYWMNCF