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Lag0039254 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039254
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr2:39926822..39927576
RNA-Seq ExpressionLag0039254
SyntenyLag0039254
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039044.1 gag/pol protein [Cucumis melo var. makuwa]2.7e-1558.33Show/hide
Query:  LSKKLFPETPQEVEDMRRMP--------------------YAIGIVSKYKSNPRFDHWKTVKNILKYLRRKRNYMLVYGTKDLV
        LSK+  PETPQEVEDMRR+P                    YA+GIVS+Y+SNP  DHW TVK ILKYLRR R YMLVYG KDL+
Subjt:  LSKKLFPETPQEVEDMRRMP--------------------YAIGIVSKYKSNPRFDHWKTVKNILKYLRRKRNYMLVYGTKDLV
KAA0061927.1 gag/pol protein [Cucumis melo var. makuwa]3.5e-1555.95Show/hide
Query:  LSKKLFPETPQEVEDMRRMPYA--------------------IGIVSKYKSNPRFDHWKTVKNILKYLRRKRNYMLVYGTKDLV
        LSKK  P+TPQEVEDMR++PYA                    + +VS+Y+SNPR DHW  VKNILKYLRR ++YMLVYGTKDL+
Subjt:  LSKKLFPETPQEVEDMRRMPYA--------------------IGIVSKYKSNPRFDHWKTVKNILKYLRRKRNYMLVYGTKDLV
TYJ99632.1 gag/pol protein [Cucumis melo var. makuwa]5.4e-1658.33Show/hide
Query:  LSKKLFPETPQEVEDMRRMP--------------------YAIGIVSKYKSNPRFDHWKTVKNILKYLRRKRNYMLVYGTKDLV
        LSK+  P+TPQEVEDMRR+P                    YA+GIVS+Y+SNPR DHW  VK ILKYLRR RNYMLVYG KDL+
Subjt:  LSKKLFPETPQEVEDMRRMP--------------------YAIGIVSKYKSNPRFDHWKTVKNILKYLRRKRNYMLVYGTKDLV
TYJ99758.1 gag/pol protein [Cucumis melo var. makuwa]2.7e-1558.33Show/hide
Query:  LSKKLFPETPQEVEDMRRMP--------------------YAIGIVSKYKSNPRFDHWKTVKNILKYLRRKRNYMLVYGTKDLV
        LSK+  PETPQEVEDMRR+P                    YA+GIVS+Y+SNP  DHW TVK ILKYLRR R YMLVYG KDL+
Subjt:  LSKKLFPETPQEVEDMRRMP--------------------YAIGIVSKYKSNPRFDHWKTVKNILKYLRRKRNYMLVYGTKDLV
TYK24002.1 gag/pol protein [Cucumis melo var. makuwa]3.5e-1555.95Show/hide
Query:  LSKKLFPETPQEVEDMRRMPYA--------------------IGIVSKYKSNPRFDHWKTVKNILKYLRRKRNYMLVYGTKDLV
        LSKK  P+TPQEVEDMR++PYA                    + +VS+Y+SNPR DHW  VKNILKYLRR ++YMLVYGTKDL+
Subjt:  LSKKLFPETPQEVEDMRRMPYA--------------------IGIVSKYKSNPRFDHWKTVKNILKYLRRKRNYMLVYGTKDLV
TrEMBL top hitse value%identityAlignment
A0A5A7T6C7 Gag/pol protein1.3e-1558.33Show/hide
Query:  LSKKLFPETPQEVEDMRRMP--------------------YAIGIVSKYKSNPRFDHWKTVKNILKYLRRKRNYMLVYGTKDLV
        LSK+  PETPQEVEDMRR+P                    YA+GIVS+Y+SNP  DHW TVK ILKYLRR R YMLVYG KDL+
Subjt:  LSKKLFPETPQEVEDMRRMP--------------------YAIGIVSKYKSNPRFDHWKTVKNILKYLRRKRNYMLVYGTKDLV
A0A5A7V1F5 Gag/pol protein1.7e-1557.14Show/hide
Query:  LSKKLFPETPQEVEDMRRMP--------------------YAIGIVSKYKSNPRFDHWKTVKNILKYLRRKRNYMLVYGTKDLV
        LSK+  P+TPQEVEDMRR+P                    YA+GIVS+Y+SNP  DHW TVK ILKYLRR R+YMLVYG KDL+
Subjt:  LSKKLFPETPQEVEDMRRMP--------------------YAIGIVSKYKSNPRFDHWKTVKNILKYLRRKRNYMLVYGTKDLV
A0A5A7V4T1 Gag/pol protein1.7e-1555.95Show/hide
Query:  LSKKLFPETPQEVEDMRRMPYA--------------------IGIVSKYKSNPRFDHWKTVKNILKYLRRKRNYMLVYGTKDLV
        LSKK  P+TPQEVEDMR++PYA                    + +VS+Y+SNPR DHW  VKNILKYLRR ++YMLVYGTKDL+
Subjt:  LSKKLFPETPQEVEDMRRMPYA--------------------IGIVSKYKSNPRFDHWKTVKNILKYLRRKRNYMLVYGTKDLV
A0A5D3BIR3 Gag/pol protein2.6e-1658.33Show/hide
Query:  LSKKLFPETPQEVEDMRRMP--------------------YAIGIVSKYKSNPRFDHWKTVKNILKYLRRKRNYMLVYGTKDLV
        LSK+  P+TPQEVEDMRR+P                    YA+GIVS+Y+SNPR DHW  VK ILKYLRR RNYMLVYG KDL+
Subjt:  LSKKLFPETPQEVEDMRRMP--------------------YAIGIVSKYKSNPRFDHWKTVKNILKYLRRKRNYMLVYGTKDLV
A0A5D3BNP0 Gag/pol protein1.3e-1558.33Show/hide
Query:  LSKKLFPETPQEVEDMRRMP--------------------YAIGIVSKYKSNPRFDHWKTVKNILKYLRRKRNYMLVYGTKDLV
        LSK+  PETPQEVEDMRR+P                    YA+GIVS+Y+SNP  DHW TVK ILKYLRR R YMLVYG KDL+
Subjt:  LSKKLFPETPQEVEDMRRMP--------------------YAIGIVSKYKSNPRFDHWKTVKNILKYLRRKRNYMLVYGTKDLV
SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-945.8e-0534.15Show/hide
Query:  LSKKLFPETPQEVEDMRRMPY--------------------AIGIVSKYKSNPRFDHWKTVKNILKYLRRKRNYMLVYGTKD
        LSKK+ P T +E  +M ++PY                    A+G+VS++  NP  +HW+ VK IL+YLR      L +G  D
Subjt:  LSKKLFPETPQEVEDMRRMPY--------------------AIGIVSKYKSNPRFDHWKTVKNILKYLRRKRNYMLVYGTKD
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTCATTTTGTCTAAGAAACTGTTTCCTGAGACACCTCAAGAAGTTGAGGACATGAGACGAATGCCCTATGCAATAGGGATTGTCAGTAAGTACAAATCTAATCC
AAGATTTGATCACTGGAAAACTGTTAAGAATATCCTCAAGTATCTGAGGAGAAAGAGGAACTATATGCTCGTGTATGGGACTAAGGACTTGGTGAATAGATGGAGGTCTT
GGAAGTTAACGGAGGAGGAGGCGGAGAATGTGAAGTCGGGTGATGTGGCGTCGGTCTTACCTGAAGGATCGAGGGAGCTATGTATGGTGGGGAAGGTGCTCTCGTCGAAG
CGTGTGAATATGGATGCTTTCCGAGATTTTCGGTCTAAAGGGGAGAAGGTGAGAGTTATGTCGTCAGGGTCCTGGGCGTTTGATAGATCCCTTGTGATACTGAAGGATGC
GGGGAATGGCAAAGCACTTGTAAGGGAAGATTGGGATAGTGGAGGAAAAAGGTGGGCCACAAGGAAGCGAGTGGACAAGACCAGTGTTGAGGCTGAGAGTGTGTCTGCGG
GTAGATCGACCCCTCCAAAGAGGTTTCCAGATGCAGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATTCATTTTGTCTAAGAAACTGTTTCCTGAGACACCTCAAGAAGTTGAGGACATGAGACGAATGCCCTATGCAATAGGGATTGTCAGTAAGTACAAATCTAATCC
AAGATTTGATCACTGGAAAACTGTTAAGAATATCCTCAAGTATCTGAGGAGAAAGAGGAACTATATGCTCGTGTATGGGACTAAGGACTTGGTGAATAGATGGAGGTCTT
GGAAGTTAACGGAGGAGGAGGCGGAGAATGTGAAGTCGGGTGATGTGGCGTCGGTCTTACCTGAAGGATCGAGGGAGCTATGTATGGTGGGGAAGGTGCTCTCGTCGAAG
CGTGTGAATATGGATGCTTTCCGAGATTTTCGGTCTAAAGGGGAGAAGGTGAGAGTTATGTCGTCAGGGTCCTGGGCGTTTGATAGATCCCTTGTGATACTGAAGGATGC
GGGGAATGGCAAAGCACTTGTAAGGGAAGATTGGGATAGTGGAGGAAAAAGGTGGGCCACAAGGAAGCGAGTGGACAAGACCAGTGTTGAGGCTGAGAGTGTGTCTGCGG
GTAGATCGACCCCTCCAAAGAGGTTTCCAGATGCAGGATGA
Protein sequenceShow/hide protein sequence
MEFILSKKLFPETPQEVEDMRRMPYAIGIVSKYKSNPRFDHWKTVKNILKYLRRKRNYMLVYGTKDLVNRWRSWKLTEEEAENVKSGDVASVLPEGSRELCMVGKVLSSK
RVNMDAFRDFRSKGEKVRVMSSGSWAFDRSLVILKDAGNGKALVREDWDSGGKRWATRKRVDKTSVEAESVSAGRSTPPKRFPDAG