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Lag0039263 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039263
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr2:40198605..40199893
RNA-Seq ExpressionLag0039263
SyntenyLag0039263
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0632353.1 hypothetical protein [Gossypium davidsonii]8.2e-0436.73Show/hide
Query:  KVSVDASFESSSIVVATAGIIIRDHRGR----AREMGFRPIQIETDSMCVFRLLTVCHEDISKLGTLIRRLKQDVDQ-ANLSFWFTRRSANQATHTLA
        KV+ DAS+   S   +++GII R++ G     A EMGFR + +E D + V R L    ED S + +LI+ +K    +  +L   F  R  N  TH LA
Subjt:  KVSVDASFESSSIVVATAGIIIRDHRGR----AREMGFRPIQIETDSMCVFRLLTVCHEDISKLGTLIRRLKQDVDQ-ANLSFWFTRRSANQATHTLA

XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]5.7e-0530.47Show/hide
Query:  KGWYKVSVDASFESSSIVVATAGIIIRDHRGR-----------------------------AREMGFRPIQIETDSMCVFRLLTVCHEDISKLGTLIRRL
        +G +K+  DASF S         IIIRDHRG+                             A E G  PI +ETDS+ ++ L     E +SK G++I  +
Subjt:  KGWYKVSVDASFESSSIVVATAGIIIRDHRGR-----------------------------AREMGFRPIQIETDSMCVFRLLTVCHEDISKLGTLIRRL

Query:  KQDV-DQANLSFWFTRRSANQATHTLAK
        K  +  +  +S+ FT+R+ N   H LA+
Subjt:  KQDV-DQANLSFWFTRRSANQATHTLAK

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]6.3e-0431.45Show/hide
Query:  YRVAQSRNLPALPSSSTTNTSFW---WKGWYKVSVDASFESSSIVVATAGIIIRDHRG-----------------------------RAREMGFRPIQIE
        Y+ AQ  +  AL        + W        KV+VDA+F   S  VA  G+IIRD  G                              A E GF   QIE
Subjt:  YRVAQSRNLPALPSSSTTNTSFW---WKGWYKVSVDASFESSSIVVATAGIIIRDHRG-----------------------------RAREMGFRPIQIE

Query:  TDSMCVFRLLTVCHEDISKLGTLIRRLKQDVDQ--ANLSFWFTRRSANQATHTLAKLCM
        TDS+ +F LLT    D S++G L   +K  +      +SF FT R+ N   H LA+L +
Subjt:  TDSMCVFRLLTVCHEDISKLGTLIRRLKQDVDQ--ANLSFWFTRRSANQATHTLAKLCM

TrEMBL top hitse value%identityAlignment
A0A443NDZ3 LINE-1 reverse transcriptase isogeny5.2e-0426.9Show/hide
Query:  DQRIWHFDSYVIFTVKSGYRVAQSRNLPALPSSSTTNTSFWWK--GWYKVSVDASFESSSIVVATAGIIIRDHRG-------------------------
        D  IW+F+   +++VKSGYRVA      A   S   N S  WK  G+ K   DA+  S        G++IRD  G                         
Subjt:  DQRIWHFDSYVIFTVKSGYRVAQSRNLPALPSSSTTNTSFWWK--GWYKVSVDASFESSSIVVATAGIIIRDHRG-------------------------

Query:  ----RAREMGFRPIQIETDSMCVFRLLTVCHEDISKLGTLIRRLKQDVDQANLSFWFTRRSANQATHTLAK
            R   MG   +  E D+  V   +     DIS+ G++I+     +   N    F +R  N+  H LA+
Subjt:  ----RAREMGFRPIQIETDSMCVFRLLTVCHEDISKLGTLIRRLKQDVDQANLSFWFTRRSANQATHTLAK

A0A6J1CDQ4 uncharacterized protein LOC1110105332.8e-0530.47Show/hide
Query:  KGWYKVSVDASFESSSIVVATAGIIIRDHRGR-----------------------------AREMGFRPIQIETDSMCVFRLLTVCHEDISKLGTLIRRL
        +G +K+  DASF S         IIIRDHRG+                             A E G  PI +ETDS+ ++ L     E +SK G++I  +
Subjt:  KGWYKVSVDASFESSSIVVATAGIIIRDHRGR-----------------------------AREMGFRPIQIETDSMCVFRLLTVCHEDISKLGTLIRRL

Query:  KQDV-DQANLSFWFTRRSANQATHTLAK
        K  +  +  +S+ FT+R+ N   H LA+
Subjt:  KQDV-DQANLSFWFTRRSANQATHTLAK

A0A6J1DBJ7 uncharacterized protein LOC1110189733.0e-0431.45Show/hide
Query:  YRVAQSRNLPALPSSSTTNTSFW---WKGWYKVSVDASFESSSIVVATAGIIIRDHRG-----------------------------RAREMGFRPIQIE
        Y+ AQ  +  AL        + W        KV+VDA+F   S  VA  G+IIRD  G                              A E GF   QIE
Subjt:  YRVAQSRNLPALPSSSTTNTSFW---WKGWYKVSVDASFESSSIVVATAGIIIRDHRG-----------------------------RAREMGFRPIQIE

Query:  TDSMCVFRLLTVCHEDISKLGTLIRRLKQDVDQ--ANLSFWFTRRSANQATHTLAKLCM
        TDS+ +F LLT    D S++G L   +K  +      +SF FT R+ N   H LA+L +
Subjt:  TDSMCVFRLLTVCHEDISKLGTLIRRLKQDVDQ--ANLSFWFTRRSANQATHTLAKLCM

A0A7J8T2C4 RNase H domain-containing protein4.0e-0436.73Show/hide
Query:  KVSVDASFESSSIVVATAGIIIRDHRGR----AREMGFRPIQIETDSMCVFRLLTVCHEDISKLGTLIRRLKQDVDQ-ANLSFWFTRRSANQATHTLA
        KV+ DAS+   S   +++GII R++ G     A EMGFR + +E D + V R L    ED S + +LI+ +K    +  +L   F  R  N  TH LA
Subjt:  KVSVDASFESSSIVVATAGIIIRDHRGR----AREMGFRPIQIETDSMCVFRLLTVCHEDISKLGTLIRRLKQDVDQ-ANLSFWFTRRSANQATHTLA

A0A7J8VZD5 RNase H domain-containing protein4.0e-0436.73Show/hide
Query:  KVSVDASFESSSIVVATAGIIIRDHRGR----AREMGFRPIQIETDSMCVFRLLTVCHEDISKLGTLIRRLKQDVDQ-ANLSFWFTRRSANQATHTLA
        KV+ DAS+   S   +++GII R++ G     A EMGFR + +E D + V R L    ED S + +LI+ +K    +  +L   F  R  N  TH LA
Subjt:  KVSVDASFESSSIVVATAGIIIRDHRGR----AREMGFRPIQIETDSMCVFRLLTVCHEDISKLGTLIRRLKQDVDQ-ANLSFWFTRRSANQATHTLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGCTCACTCTGAGGCTGACCAAAGGATTTGGCATTTCGATTCTTATGTGATTTTTACCGTTAAAAGTGGGTATCGTGTGGCTCAGTCGAGGAATCTTCCTGCGCT
TCCTTCCTCGTCGACGACAAATACTTCTTTTTGGTGGAAAGGTTGGTACAAGGTAAGTGTTGATGCTAGTTTTGAGTCGAGTTCCATCGTCGTTGCTACTGCTGGGATTA
TTATTCGTGACCATAGGGGAAGGGCACGAGAGATGGGTTTTCGACCAATTCAGATAGAGACTGATTCAATGTGTGTTTTTCGTCTACTTACAGTTTGCCATGAAGACATC
TCGAAACTGGGTACTTTAATCAGAAGATTGAAACAAGATGTCGATCAGGCTAATTTGTCGTTCTGGTTTACTCGTCGCTCGGCTAATCAAGCTACTCATACTCTGGCAAA
GCTTTGCATGGACTATTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGCTCACTCTGAGGCTGACCAAAGGATTTGGCATTTCGATTCTTATGTGATTTTTACCGTTAAAAGTGGGTATCGTGTGGCTCAGTCGAGGAATCTTCCTGCGCT
TCCTTCCTCGTCGACGACAAATACTTCTTTTTGGTGGAAAGGTTGGTACAAGGTAAGTGTTGATGCTAGTTTTGAGTCGAGTTCCATCGTCGTTGCTACTGCTGGGATTA
TTATTCGTGACCATAGGGGAAGGGCACGAGAGATGGGTTTTCGACCAATTCAGATAGAGACTGATTCAATGTGTGTTTTTCGTCTACTTACAGTTTGCCATGAAGACATC
TCGAAACTGGGTACTTTAATCAGAAGATTGAAACAAGATGTCGATCAGGCTAATTTGTCGTTCTGGTTTACTCGTCGCTCGGCTAATCAAGCTACTCATACTCTGGCAAA
GCTTTGCATGGACTATTCCTGA
Protein sequenceShow/hide protein sequence
MFAHSEADQRIWHFDSYVIFTVKSGYRVAQSRNLPALPSSSTTNTSFWWKGWYKVSVDASFESSSIVVATAGIIIRDHRGRAREMGFRPIQIETDSMCVFRLLTVCHEDI
SKLGTLIRRLKQDVDQANLSFWFTRRSANQATHTLAKLCMDYS