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Lag0039283 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039283
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr2:40732774..40733562
RNA-Seq ExpressionLag0039283
SyntenyLag0039283
Gene Ontology termsGO:0034641 - cellular nitrogen compound metabolic process (biological process)
GO:0071704 - organic substance metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045111.1 putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa]6.7e-1745.95Show/hide
Query:  LQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMISVLSTSTKHQEVQDVMALLLTHENRIERKLKAVNSDGTPPSANLTTQGHN
        ++KG ++L +YF +I++C+D+LA + K + T+DHI+YIL GLG+EY+SMISV+S  T    VQDVM+LLLT E++IE K   + S+ + P+ N+TT   +
Subjt:  LQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMISVLSTSTKHQEVQDVMALLLTHENRIERKLKAVNSDGTPPSANLTTQGHN

Query:  NSDHDPQKAMT
         S    + A+T
Subjt:  NSDHDPQKAMT

KAA0046195.1 putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa]4.3e-1643.24Show/hide
Query:  LQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMISVLSTSTKHQEVQDVMALLLTHENRIERKLKAVNSDGTPPSANLTTQGHN
        ++KG+M+L +YF +I++C+D+LA + K + T+DHI+YIL GLG+EY+S+IS++S  T    VQD M+LLLT E++IE K   + S+ + P+ N+TT   +
Subjt:  LQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMISVLSTSTKHQEVQDVMALLLTHENRIERKLKAVNSDGTPPSANLTTQGHN

Query:  NSDHDPQKAMT
         S  + +  +T
Subjt:  NSDHDPQKAMT

XP_022136882.1 dr1-associated corepressor homolog isoform X1 [Momordica charantia]2.1e-1851.96Show/hide
Query:  LQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMISVLSTSTKHQEVQDVMALLLTHENRIERKLKAVNSDGTPPSANLTTQGHN
        ++KG++ L DYF ++K  +DSLA  GK V  EDHIM+IL GL SE+ES +SV+S  T+ Q +Q+V +LLL+HE R ER   ++N+DGT PS NLT Q  N
Subjt:  LQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMISVLSTSTKHQEVQDVMALLLTHENRIERKLKAVNSDGTPPSANLTTQGHN

Query:  NS
        ++
Subjt:  NS

XP_022136883.1 dr1-associated corepressor homolog isoform X2 [Momordica charantia]2.1e-1851.96Show/hide
Query:  LQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMISVLSTSTKHQEVQDVMALLLTHENRIERKLKAVNSDGTPPSANLTTQGHN
        ++KG++ L DYF ++K  +DSLA  GK V  EDHIM+IL GL SE+ES +SV+S  T+ Q +Q+V +LLL+HE R ER   ++N+DGT PS NLT Q  N
Subjt:  LQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMISVLSTSTKHQEVQDVMALLLTHENRIERKLKAVNSDGTPPSANLTTQGHN

Query:  NS
        ++
Subjt:  NS

XP_022154487.1 uncharacterized protein LOC111021757 [Momordica charantia]6.7e-1750.48Show/hide
Query:  VKLSNDNFLTLQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMISVLSTSTKHQEVQDVMALLLTHENRIERKLKAVNSDGTPP
        +KL  +NF   +KG+++L DYF +IK  +DSLA+ GK + TEDHIM+IL GLG E++++ISV++     Q +Q+V +LLL  E R ER L  +NSDG+ P
Subjt:  VKLSNDNFLTLQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMISVLSTSTKHQEVQDVMALLLTHENRIERKLKAVNSDGTPP

Query:  SANLT
        S NLT
Subjt:  SANLT

TrEMBL top hitse value%identityAlignment
A0A5A7TUB3 Putative glutathione S-transferase isoform X13.2e-1745.95Show/hide
Query:  LQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMISVLSTSTKHQEVQDVMALLLTHENRIERKLKAVNSDGTPPSANLTTQGHN
        ++KG ++L +YF +I++C+D+LA + K + T+DHI+YIL GLG+EY+SMISV+S  T    VQDVM+LLLT E++IE K   + S+ + P+ N+TT   +
Subjt:  LQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMISVLSTSTKHQEVQDVMALLLTHENRIERKLKAVNSDGTPPSANLTTQGHN

Query:  NSDHDPQKAMT
         S    + A+T
Subjt:  NSDHDPQKAMT

A0A5D3CRZ7 Putative Ty1-copia-like retrotransposon2.1e-1643.24Show/hide
Query:  LQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMISVLSTSTKHQEVQDVMALLLTHENRIERKLKAVNSDGTPPSANLTTQGHN
        ++KG+M+L +YF +I++C+D+LA + K + T+DHI+YIL GLG+EY+S+IS++S  T    VQD M+LLLT E++IE K   + S+ + P+ N+TT   +
Subjt:  LQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMISVLSTSTKHQEVQDVMALLLTHENRIERKLKAVNSDGTPPSANLTTQGHN

Query:  NSDHDPQKAMT
         S  + +  +T
Subjt:  NSDHDPQKAMT

A0A6J1C6N9 dr1-associated corepressor homolog isoform X11.0e-1851.96Show/hide
Query:  LQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMISVLSTSTKHQEVQDVMALLLTHENRIERKLKAVNSDGTPPSANLTTQGHN
        ++KG++ L DYF ++K  +DSLA  GK V  EDHIM+IL GL SE+ES +SV+S  T+ Q +Q+V +LLL+HE R ER   ++N+DGT PS NLT Q  N
Subjt:  LQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMISVLSTSTKHQEVQDVMALLLTHENRIERKLKAVNSDGTPPSANLTTQGHN

Query:  NS
        ++
Subjt:  NS

A0A6J1C8R2 dr1-associated corepressor homolog isoform X21.0e-1851.96Show/hide
Query:  LQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMISVLSTSTKHQEVQDVMALLLTHENRIERKLKAVNSDGTPPSANLTTQGHN
        ++KG++ L DYF ++K  +DSLA  GK V  EDHIM+IL GL SE+ES +SV+S  T+ Q +Q+V +LLL+HE R ER   ++N+DGT PS NLT Q  N
Subjt:  LQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMISVLSTSTKHQEVQDVMALLLTHENRIERKLKAVNSDGTPPSANLTTQGHN

Query:  NS
        ++
Subjt:  NS

A0A6J1DLT9 uncharacterized protein LOC1110217573.2e-1750.48Show/hide
Query:  VKLSNDNFLTLQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMISVLSTSTKHQEVQDVMALLLTHENRIERKLKAVNSDGTPP
        +KL  +NF   +KG+++L DYF +IK  +DSLA+ GK + TEDHIM+IL GLG E++++ISV++     Q +Q+V +LLL  E R ER L  +NSDG+ P
Subjt:  VKLSNDNFLTLQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMISVLSTSTKHQEVQDVMALLLTHENRIERKLKAVNSDGTPP

Query:  SANLT
        S NLT
Subjt:  SANLT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)1.9e-0630.1Show/hide
Query:  NQIINPGNKFSTVKLSNDNFLTLQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMISVLSTSTKHQEVQDVMALLLTHENRIER
        NQ  N  NK +     +    T   G M + DY+ ++KK  DSL  V   V   + +MY+LNGL  +++++I+V+          D   +L   E+R++R
Subjt:  NQIINPGNKFSTVKLSNDNFLTLQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMISVLSTSTKHQEVQDVMALLLTHENRIER

Query:  KLK
         +K
Subjt:  KLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCTTTGACAAACACGGAGGCTATTGAACCTACAGTCGATTCTGGTAATCAGTCGAATCAGATCATCAATCCTGGTAATAAATTTTCCACTGTTAAATTGAGCAA
TGACAATTTTCTGACCTTACAAAAAGGATCAATGACACTGAATGACTACTTCTCACAAATTAAGAAGTGTATAGATTCCCTTGCTGTAGTAGGAAAAGTAGTTGACACTG
AGGATCACATAATGTACATCTTAAATGGCCTAGGATCTGAATATGAGTCAATGATCTCTGTTTTATCGACTTCTACAAAACATCAGGAGGTTCAAGATGTTATGGCATTA
CTATTAACGCATGAAAACAGAATTGAGAGAAAACTTAAGGCTGTCAATTCAGATGGAACACCACCCTCAGCAAACCTGACGACACAAGGCCATAATAACAGTGATCATGA
TCCTCAGAAGGCAATGACTCAGTTTCATAACAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATTCTTTGACAAACACGGAGGCTATTGAACCTACAGTCGATTCTGGTAATCAGTCGAATCAGATCATCAATCCTGGTAATAAATTTTCCACTGTTAAATTGAGCAA
TGACAATTTTCTGACCTTACAAAAAGGATCAATGACACTGAATGACTACTTCTCACAAATTAAGAAGTGTATAGATTCCCTTGCTGTAGTAGGAAAAGTAGTTGACACTG
AGGATCACATAATGTACATCTTAAATGGCCTAGGATCTGAATATGAGTCAATGATCTCTGTTTTATCGACTTCTACAAAACATCAGGAGGTTCAAGATGTTATGGCATTA
CTATTAACGCATGAAAACAGAATTGAGAGAAAACTTAAGGCTGTCAATTCAGATGGAACACCACCCTCAGCAAACCTGACGACACAAGGCCATAATAACAGTGATCATGA
TCCTCAGAAGGCAATGACTCAGTTTCATAACAATTAG
Protein sequenceShow/hide protein sequence
MDSLTNTEAIEPTVDSGNQSNQIINPGNKFSTVKLSNDNFLTLQKGSMTLNDYFSQIKKCIDSLAVVGKVVDTEDHIMYILNGLGSEYESMISVLSTSTKHQEVQDVMAL
LLTHENRIERKLKAVNSDGTPPSANLTTQGHNNSDHDPQKAMTQFHNN