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Lag0039284 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039284
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr2:40740297..40741001
RNA-Seq ExpressionLag0039284
SyntenyLag0039284
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.1e-1535.42Show/hide
Query:  AIWTPIPEGMWKLSSDASWSEQRNRGGIGWAIRRWNGTLVAAGYKSVNRSWKISWLEAFAICEGLRAL-SLNALPVRIELDALLIVRLLLRKEEDISDLG
        A W P     WKL+++A+W    N GGIGW +R   G ++ A  + +     I++LE  AICEGLRA+   +  P+ +E D+L  + LL R+ +D +++ 
Subjt:  AIWTPIPEGMWKLSSDASWSEQRNRGGIGWAIRRWNGTLVAAGYKSVNRSWKISWLEAFAICEGLRAL-SLNALPVRIELDALLIVRLLLRKEEDISDLG

Query:  KFINEAHALIAERKIDSIDHVDRNQNMVAHKLARVACDLNESKE
          + E   ++ + +I S+ H+ R  N VAH LAR A + N+ +E
Subjt:  KFINEAHALIAERKIDSIDHVDRNQNMVAHKLARVACDLNESKE

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.7e-2436.89Show/hide
Query:  YKNEILHNKHSPDIEVLSQRIKKYLVEFKVESEPSRHPAHPTNFVSRQAAIWTPIPEGMWKLSSDASWSEQRNRGGIGWAIRRWNGTLVAAGYKSVNRSW
        ++N ++          + Q++ K++ E   +SE S    H T         W P P  +W L++DASWS+  +RGGIGW IR W+G +V AG + V    
Subjt:  YKNEILHNKHSPDIEVLSQRIKKYLVEFKVESEPSRHPAHPTNFVSRQAAIWTPIPEGMWKLSSDASWSEQRNRGGIGWAIRRWNGTLVAAGYKSVNRSW

Query:  KISWLEAFAICEGLRAL-SLNAL-PVRIELDALLIVRLLLRKEEDISDLGKFINEAHALIAERKIDSIDHVDRNQNMVAHKLARVACDLNESKEWFNLFP
         +  LEA AI EGLR L +L  L P+ IE D+  +  LL RK ED++  G  + E   L    +I +   V R  N  AH LA+ A  L ES  W + FP
Subjt:  KISWLEAFAICEGLRAL-SLNAL-PVRIELDALLIVRLLLRKEEDISDLGKFINEAHALIAERKIDSIDHVDRNQNMVAHKLARVACDLNESKEWFNLFP

Query:  DWLILL
        +WL +L
Subjt:  DWLILL

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]8.4e-1634.87Show/hide
Query:  AIWTPIPEGMWKLSSDASWSEQRNRGGIGWAIRRWNGTLVAAGYKSVNRSWKISWLEAFAICEGLRAL---------SLNALPVRIELDALLIVRLLLRK
        A W P     WKL++DA+W    N GGIGW +R   G ++ A  + +     I++LE  AICEGLRA+           +  P+ +E D+L  + LL R+
Subjt:  AIWTPIPEGMWKLSSDASWSEQRNRGGIGWAIRRWNGTLVAAGYKSVNRSWKISWLEAFAICEGLRAL---------SLNALPVRIELDALLIVRLLLRK

Query:  EEDISDLGKFINEAHALIAERKIDSIDHVDRNQNMVAHKLARVACDLNESKE
         +D +++   + E   ++ + KI S+ H+ R  N VAH LAR A + N+ +E
Subjt:  EEDISDLGKFINEAHALIAERKIDSIDHVDRNQNMVAHKLARVACDLNESKE

XP_024041100.1 uncharacterized protein LOC112098855 isoform X1 [Citrus clementina]5.1e-1326.76Show/hide
Query:  KNEILHNKHSPDIEVLSQRIKKYLVEF------KVESEPSRHPAHPTNFVSRQAAIWTPIPEGMWKLSSDASWSEQRNRGGIGWAIRRWNGTLVAAGYKS
        +N +++     D ++ + R    +  +       V+  PS+H        +    +W P P G +K++ DA+     ++ G+G  +R  +G ++AA  +S
Subjt:  KNEILHNKHSPDIEVLSQRIKKYLVEF------KVESEPSRHPAHPTNFVSRQAAIWTPIPEGMWKLSSDASWSEQRNRGGIGWAIRRWNGTLVAAGYKS

Query:  VNRSWKISWLEAFAICEGLR-ALSLNALPVRIELDALLIVRLLLRKEEDISDLGKFINEAHALIAERKIDSIDHVDRNQNMVAHKLARVACDLNESKEWF
              ++ +EA A+  G++ A      P+ IE D+L +V L L+++  ++++   + E  A +  +   SI  V RN N+VAH LA+VA D      W 
Subjt:  VNRSWKISWLEAFAICEGLR-ALSLNALPVRIELDALLIVRLLLRKEEDISDLGKFINEAHALIAERKIDSIDHVDRNQNMVAHKLARVACDLNESKEWF

Query:  NLFPDWLILLNSK
          FP  ++LL SK
Subjt:  NLFPDWLILLNSK

XP_024041104.1 uncharacterized protein LOC112098855 isoform X3 [Citrus clementina]5.1e-1326.76Show/hide
Query:  KNEILHNKHSPDIEVLSQRIKKYLVEF------KVESEPSRHPAHPTNFVSRQAAIWTPIPEGMWKLSSDASWSEQRNRGGIGWAIRRWNGTLVAAGYKS
        +N +++     D ++ + R    +  +       V+  PS+H        +    +W P P G +K++ DA+     ++ G+G  +R  +G ++AA  +S
Subjt:  KNEILHNKHSPDIEVLSQRIKKYLVEF------KVESEPSRHPAHPTNFVSRQAAIWTPIPEGMWKLSSDASWSEQRNRGGIGWAIRRWNGTLVAAGYKS

Query:  VNRSWKISWLEAFAICEGLR-ALSLNALPVRIELDALLIVRLLLRKEEDISDLGKFINEAHALIAERKIDSIDHVDRNQNMVAHKLARVACDLNESKEWF
              ++ +EA A+  G++ A      P+ IE D+L +V L L+++  ++++   + E  A +  +   SI  V RN N+VAH LA+VA D      W 
Subjt:  VNRSWKISWLEAFAICEGLR-ALSLNALPVRIELDALLIVRLLLRKEEDISDLGKFINEAHALIAERKIDSIDHVDRNQNMVAHKLARVACDLNESKEWF

Query:  NLFPDWLILLNSK
          FP  ++LL SK
Subjt:  NLFPDWLILLNSK

TrEMBL top hitse value%identityAlignment
A0A5B6YN15 RNase H domain-containing protein (Fragment)3.8e-1431.79Show/hide
Query:  AAIWTPIPEGMWKLSSDASWSEQRNRGGIGWAIRRWNGTLVAAGYKSVNRSWKISWLEAFAICEGL-RALSLNALPVRIELDALLIVRLLLRKEEDISDL
        AA W+P PEG++KL+ DASW      GG+G  IR W G ++A   K +++     + E      GL  A  +    + +E D L ++  +    ED SDL
Subjt:  AAIWTPIPEGMWKLSSDASWSEQRNRGGIGWAIRRWNGTLVAAGYKSVNRSWKISWLEAFAICEGL-RALSLNALPVRIELDALLIVRLLLRKEEDISDL

Query:  GKFINEAHALIAERKIDSIDHVDRNQNMVAHKLARVACDLNESKEWFNLFP
        G  + +    + E ++   +HV R  N VAH +A  A D+ +   W  + P
Subjt:  GKFINEAHALIAERKIDSIDHVDRNQNMVAHKLARVACDLNESKEWFNLFP

A0A6J1CP26 uncharacterized protein LOC1110134125.3e-1635.42Show/hide
Query:  AIWTPIPEGMWKLSSDASWSEQRNRGGIGWAIRRWNGTLVAAGYKSVNRSWKISWLEAFAICEGLRAL-SLNALPVRIELDALLIVRLLLRKEEDISDLG
        A W P     WKL+++A+W    N GGIGW +R   G ++ A  + +     I++LE  AICEGLRA+   +  P+ +E D+L  + LL R+ +D +++ 
Subjt:  AIWTPIPEGMWKLSSDASWSEQRNRGGIGWAIRRWNGTLVAAGYKSVNRSWKISWLEAFAICEGLRAL-SLNALPVRIELDALLIVRLLLRKEEDISDLG

Query:  KFINEAHALIAERKIDSIDHVDRNQNMVAHKLARVACDLNESKE
          + E   ++ + +I S+ H+ R  N VAH LAR A + N+ +E
Subjt:  KFINEAHALIAERKIDSIDHVDRNQNMVAHKLARVACDLNESKE

A0A6J1DNV9 uncharacterized protein LOC1110224038.2e-2536.89Show/hide
Query:  YKNEILHNKHSPDIEVLSQRIKKYLVEFKVESEPSRHPAHPTNFVSRQAAIWTPIPEGMWKLSSDASWSEQRNRGGIGWAIRRWNGTLVAAGYKSVNRSW
        ++N ++          + Q++ K++ E   +SE S    H T         W P P  +W L++DASWS+  +RGGIGW IR W+G +V AG + V    
Subjt:  YKNEILHNKHSPDIEVLSQRIKKYLVEFKVESEPSRHPAHPTNFVSRQAAIWTPIPEGMWKLSSDASWSEQRNRGGIGWAIRRWNGTLVAAGYKSVNRSW

Query:  KISWLEAFAICEGLRAL-SLNAL-PVRIELDALLIVRLLLRKEEDISDLGKFINEAHALIAERKIDSIDHVDRNQNMVAHKLARVACDLNESKEWFNLFP
         +  LEA AI EGLR L +L  L P+ IE D+  +  LL RK ED++  G  + E   L    +I +   V R  N  AH LA+ A  L ES  W + FP
Subjt:  KISWLEAFAICEGLRAL-SLNAL-PVRIELDALLIVRLLLRKEEDISDLGKFINEAHALIAERKIDSIDHVDRNQNMVAHKLARVACDLNESKEWFNLFP

Query:  DWLILL
        +WL +L
Subjt:  DWLILL

A0A6J1DSV1 uncharacterized protein LOC1110236084.1e-1634.87Show/hide
Query:  AIWTPIPEGMWKLSSDASWSEQRNRGGIGWAIRRWNGTLVAAGYKSVNRSWKISWLEAFAICEGLRAL---------SLNALPVRIELDALLIVRLLLRK
        A W P     WKL++DA+W    N GGIGW +R   G ++ A  + +     I++LE  AICEGLRA+           +  P+ +E D+L  + LL R+
Subjt:  AIWTPIPEGMWKLSSDASWSEQRNRGGIGWAIRRWNGTLVAAGYKSVNRSWKISWLEAFAICEGLRAL---------SLNALPVRIELDALLIVRLLLRK

Query:  EEDISDLGKFINEAHALIAERKIDSIDHVDRNQNMVAHKLARVACDLNESKE
         +D +++   + E   ++ + KI S+ H+ R  N VAH LAR A + N+ +E
Subjt:  EEDISDLGKFINEAHALIAERKIDSIDHVDRNQNMVAHKLARVACDLNESKE

A0A803Q2K8 Uncharacterized protein1.6e-1229.58Show/hide
Query:  KNEILHNKHSPDIEVLSQRIKKYLVEFKVESEPSRHPAHPTNFVS---------RQAAIWTPIPEGMWKLSSDASWSEQRNRGGIGWAIRRWNGTLVAAG
        +N I H       + ++     YL EF+  +   R    P +  +           A  WT  P+G  KL++DA+  + RN+ GIG  +R  +G +VAA 
Subjt:  KNEILHNKHSPDIEVLSQRIKKYLVEFKVESEPSRHPAHPTNFVS---------RQAAIWTPIPEGMWKLSSDASWSEQRNRGGIGWAIRRWNGTLVAAG

Query:  YKSVNRSWKISWLEAFAICEGLRALSLNALPVR-IELDALLIVRLLLRKEEDISDLGKFINEAHALIAERKIDSIDHVDRNQNMVAHKLARVACDLNESK
         K +  ++K   +EA  +   L  L  N L V  IE D+LL+V+ LL  +  +S     +N  + L++      I+HV R+ N  AH LA+ A  ++   
Subjt:  YKSVNRSWKISWLEAFAICEGLRALSLNALPVR-IELDALLIVRLLLRKEEDISDLGKFINEAHALIAERKIDSIDHVDRNQNMVAHKLARVACDLNESK

Query:  EWFNLFPDWLILL
         W   FP  L+ L
Subjt:  EWFNLFPDWLILL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACAAAAACGAAATTCTTCACAACAAACACAGTCCAGATATAGAGGTTCTATCTCAAAGAATAAAGAAATACCTTGTCGAGTTCAAAGTTGAATCGGAGCCTTCTCG
ACACCCAGCACATCCTACCAATTTCGTCTCTCGACAGGCTGCGATTTGGACTCCAATTCCGGAAGGAATGTGGAAGCTGTCCAGTGATGCGTCTTGGAGTGAGCAAAGAA
ACCGGGGAGGGATCGGATGGGCTATTCGACGATGGAATGGTACATTGGTTGCTGCAGGTTACAAAAGCGTGAACAGAAGCTGGAAGATTAGTTGGCTCGAGGCGTTTGCA
ATTTGCGAGGGGTTGAGAGCGTTGTCATTGAATGCTCTGCCTGTGAGAATTGAACTGGATGCTTTGTTGATAGTCCGTCTACTTTTGCGGAAGGAGGAAGACATCTCAGA
TTTGGGAAAGTTTATTAATGAAGCTCATGCCCTAATTGCTGAAAGGAAGATTGATTCTATTGACCACGTTGATAGAAATCAGAATATGGTGGCCCACAAGTTGGCTAGAG
TGGCTTGTGATCTGAATGAATCTAAGGAGTGGTTTAATTTGTTTCCTGATTGGCTAATCTTACTGAATAGTAAAGATACTCGTGATATTTGTGTTACCAGCGGGGGTTCC
TGTCCCACTGGGGATTTTTCTTTGGGATCTCTTCCATTTTGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTACAAAAACGAAATTCTTCACAACAAACACAGTCCAGATATAGAGGTTCTATCTCAAAGAATAAAGAAATACCTTGTCGAGTTCAAAGTTGAATCGGAGCCTTCTCG
ACACCCAGCACATCCTACCAATTTCGTCTCTCGACAGGCTGCGATTTGGACTCCAATTCCGGAAGGAATGTGGAAGCTGTCCAGTGATGCGTCTTGGAGTGAGCAAAGAA
ACCGGGGAGGGATCGGATGGGCTATTCGACGATGGAATGGTACATTGGTTGCTGCAGGTTACAAAAGCGTGAACAGAAGCTGGAAGATTAGTTGGCTCGAGGCGTTTGCA
ATTTGCGAGGGGTTGAGAGCGTTGTCATTGAATGCTCTGCCTGTGAGAATTGAACTGGATGCTTTGTTGATAGTCCGTCTACTTTTGCGGAAGGAGGAAGACATCTCAGA
TTTGGGAAAGTTTATTAATGAAGCTCATGCCCTAATTGCTGAAAGGAAGATTGATTCTATTGACCACGTTGATAGAAATCAGAATATGGTGGCCCACAAGTTGGCTAGAG
TGGCTTGTGATCTGAATGAATCTAAGGAGTGGTTTAATTTGTTTCCTGATTGGCTAATCTTACTGAATAGTAAAGATACTCGTGATATTTGTGTTACCAGCGGGGGTTCC
TGTCCCACTGGGGATTTTTCTTTGGGATCTCTTCCATTTTGCTAA
Protein sequenceShow/hide protein sequence
MYKNEILHNKHSPDIEVLSQRIKKYLVEFKVESEPSRHPAHPTNFVSRQAAIWTPIPEGMWKLSSDASWSEQRNRGGIGWAIRRWNGTLVAAGYKSVNRSWKISWLEAFA
ICEGLRALSLNALPVRIELDALLIVRLLLRKEEDISDLGKFINEAHALIAERKIDSIDHVDRNQNMVAHKLARVACDLNESKEWFNLFPDWLILLNSKDTRDICVTSGGS
CPTGDFSLGSLPFC