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Lag0039315 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039315
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibosome biogenesis regulatory protein
Genome locationchr2:41152498..41158842
RNA-Seq ExpressionLag0039315
SyntenyLag0039315
Gene Ontology termsGO:0000055 - ribosomal large subunit export from nucleus (biological process)
GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0042273 - ribosomal large subunit biogenesis (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0030687 - preribosome, large subunit precursor (cellular component)
InterPro domainsIPR007023 - Ribosomal biogenesis regulatory protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589856.1 Ribosome biogenesis regulatory protein-like protein, partial [Cucurbita argyrosperma subsp. sororia]1.2e-2679.52Show/hide
Query:  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEVRMTDE
        EDR+GPLVKLS PKT+L R   +PKPK+PTKWEL AKKRGIKNRKK  I+YDEQTQTWKRRHGYDRAN EENI IIE +MTDE
Subjt:  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEVRMTDE

KAG7023528.1 Ribosome biogenesis regulatory protein-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-2679.52Show/hide
Query:  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEVRMTDE
        EDR+GPLVKLS PKT+L R   +PKPK+PTKWEL AKKRGIKNRKK  I+YDEQTQTWKRRHGYDRAN EENI IIE +MTDE
Subjt:  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEVRMTDE

XP_022144805.1 ribosome biogenesis regulatory protein homolog [Momordica charantia]1.2e-2671.58Show/hide
Query:  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEVRMTDEQVRQVEFEEKNN
        EDR+GPLV+L PPKTRL R   +PKPK PTKWEL AKKRGIKNRKK  I YDEQTQTWKRRHGYDRAN EENI IIE +MTDE       E ++N
Subjt:  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEVRMTDEQVRQVEFEEKNN

XP_022961058.1 ribosome biogenesis regulatory protein homolog [Cucurbita moschata]1.2e-2679.52Show/hide
Query:  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEVRMTDE
        EDR+GPLVKLS PKT+L R   +PKPK+PTKWEL AKKRGIKNRKK  I+YDEQTQTWKRRHGYDRAN EENI IIE +MTDE
Subjt:  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEVRMTDE

XP_023515967.1 ribosome biogenesis regulatory protein homolog isoform X1 [Cucurbita pepo subsp. pepo]1.2e-2679.52Show/hide
Query:  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEVRMTDE
        EDR+GPLVKLS PKT+L R   +PKPK+PTKWEL AKKRGIKNRKK  I+YDEQTQTWKRRHGYDRAN EENI IIE +MTDE
Subjt:  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEVRMTDE

TrEMBL top hitse value%identityAlignment
A0A6J1CSP0 Ribosome biogenesis regulatory protein5.6e-2771.58Show/hide
Query:  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEVRMTDEQVRQVEFEEKNN
        EDR+GPLV+L PPKTRL R   +PKPK PTKWEL AKKRGIKNRKK  I YDEQTQTWKRRHGYDRAN EENI IIE +MTDE       E ++N
Subjt:  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEVRMTDEQVRQVEFEEKNN

A0A6J1F066 Ribosome biogenesis regulatory protein3.1e-2575.9Show/hide
Query:  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEVRMTDE
        EDR+GPLV+L PP TRL R   +PKPK PTKWEL AKKRGIKNRKK  IVYD+QT +WKRRHGYDRAN EENI IIE +MTDE
Subjt:  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEVRMTDE

A0A6J1HAS5 Ribosome biogenesis regulatory protein5.6e-2779.52Show/hide
Query:  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEVRMTDE
        EDR+GPLVKLS PKT+L R   +PKPK+PTKWEL AKKRGIKNRKK  I+YDEQTQTWKRRHGYDRAN EENI IIE +MTDE
Subjt:  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEVRMTDE

A0A6J1HW20 Ribosome biogenesis regulatory protein3.1e-2575.9Show/hide
Query:  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEVRMTDE
        EDR+GPLV+L PP TRL R   +PKPK PTKWEL AKKRGIKNRKK  IVYD+QT +WKRRHGYDRAN EENI IIE +MTDE
Subjt:  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEVRMTDE

A0A6J1JJT9 Ribosome biogenesis regulatory protein5.6e-2779.52Show/hide
Query:  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEVRMTDE
        EDR+GPLVKLS PKT+L R   +PKPK+PTKWEL AKKRGIKNRKK  I+YDEQTQTWKRRHGYDRAN EENI IIE +MTDE
Subjt:  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEVRMTDE

SwissProt top hitse value%identityAlignment
Q2KIH4 Ribosome biogenesis regulatory protein homolog1.2e-0734.69Show/hide
Query:  EGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEV-----RMTDEQVRQVEFEEKNNA
        E  + +L  P TRL R   VP+P+  T+W+  A+ +GI+ +KK N+V+DE +  W+RR GY RA  +    +IEV      M D+  ++++ +++  A
Subjt:  EGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEV-----RMTDEQVRQVEFEEKNNA

Q501D2 Protein IQ-DOMAIN 301.1e-0865Show/hide
Query:  RQAIATLCCMLGIVKFQAIARGRRVRLSDVGFEVQSKCRL
        RQA++TLCC++GIV+ QA+ARGR +R SD+G EVQ KC L
Subjt:  RQAIATLCCMLGIVKFQAIARGRRVRLSDVGFEVQSKCRL

Q9CYH6 Ribosome biogenesis regulatory protein homolog2.8e-0740Show/hide
Query:  EGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEV
        E  + +L  P TRL R   +P+P+  T+W+  A+ +GI+ +KK N+V+DE +  W+RR GY RA  +    +IEV
Subjt:  EGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEV

Q9SH88 Ribosome biogenesis regulatory protein homolog1.3e-1753.01Show/hide
Query:  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEVRMTDE
        E  +GP+V+L PP T+L R   +P+PK PTKWE  A K+GI+ RKK  +V+DEQT  +KRRHGYDR N + ++ IIE + +DE
Subjt:  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEVRMTDE

Q9XVT0 Ribosome biogenesis regulatory protein homolog2.8e-0738.89Show/hide
Query:  EGPLVKLSPPKTRL---SRVPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEVRMTDEQVRQVEFEEK
        E  +V L P   RL    R+P+ K PTKWE  A ++GI+ RKK   V+DE T+ WK  +GY R N +    +IE+    E   +  F E+
Subjt:  EGPLVKLSPPKTRL---SRVPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEVRMTDEQVRQVEFEEK

Arabidopsis top hitse value%identityAlignment
AT1G18840.1 IQ-domain 308.0e-1065Show/hide
Query:  RQAIATLCCMLGIVKFQAIARGRRVRLSDVGFEVQSKCRL
        RQA++TLCC++GIV+ QA+ARGR +R SD+G EVQ KC L
Subjt:  RQAIATLCCMLGIVKFQAIARGRRVRLSDVGFEVQSKCRL

AT1G18840.2 IQ-domain 308.0e-1065Show/hide
Query:  RQAIATLCCMLGIVKFQAIARGRRVRLSDVGFEVQSKCRL
        RQA++TLCC++GIV+ QA+ARGR +R SD+G EVQ KC L
Subjt:  RQAIATLCCMLGIVKFQAIARGRRVRLSDVGFEVQSKCRL

AT1G74690.1 IQ-domain 312.8e-0756Show/hide
Query:  RQAIATLCCMLGIVKFQAIARGRRVRLSDVGFEVQSKCRLMQPQDHLKLA
        RQA+ATL  ++GIV+ QA ARGR +R SD+G +V  KCRL   Q + KLA
Subjt:  RQAIATLCCMLGIVKFQAIARGRRVRLSDVGFEVQSKCRLMQPQDHLKLA

AT1G80350.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein1.2e-0877.14Show/hide
Query:  QDHLKLAREYALKGLYVTSIIFFDGVITQINKKQN
        QDHLKLAREYAL+G Y TS+IFFDG I QINK  N
Subjt:  QDHLKLAREYALKGLYVTSIIFFDGVITQINKKQN

AT2G37990.1 ribosome biogenesis regulatory protein (RRS1) family protein9.4e-1953.01Show/hide
Query:  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEVRMTDE
        E  +GP+V+L PP T+L R   +P+PK PTKWE  A K+GI+ RKK  +V+DEQT  +KRRHGYDR N + ++ IIE + +DE
Subjt:  EDREGPLVKLSPPKTRLSR---VPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEVRMTDE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGTACGATTCCTGGGTGTTGCTGAAGACAGAGAGGGTCCCCTAGTGAAGTTGTCTCCACCTAAAACAAGACTGTCGAGGGTTCCAAAGCCTAAGTCTCCTACAAA
ATGGGAACTTCTGGCTAAAAAACGAGGTATAAAGAACAGGAAAAAATACAATATTGTATATGATGAACAAACTCAAACATGGAAGCGTCGTCATGGTTATGATCGTGCAA
ATTATGAGGAGAACATACTCATCATTGAAGTCAGGATGACTGATGAGCAAGTTAGACAAGTTGAATTTGAGGAAAAAAATAATGCATGTGCAAATTGGCGCTTGAGACAG
GCTATTGCTACTCTATGTTGTATGCTTGGAATTGTTAAGTTTCAAGCTATTGCTCGGGGAAGAAGAGTGAGGCTTTCTGATGTAGGGTTTGAAGTGCAAAGCAAATGTAG
ATTAATGCAGCCACAGGACCATCTGAAATTGGCGAGGGAATACGCTCTTAAAGGACTGTATGTCACTTCAATCATCTTCTTTGATGGTGTTATAACTCAGATCAACAAGA
AACAAAACCCACCCCACACCGTAGCGATCGACAATAAGAGGCTGCGAGCGGCGGCGATGGCAAACAGCAGTGGCGGCGATGACAAAGGCAAGGAAGAGACGACGGCAAAA
GAGGGAGAAAGACGAAGGGTTTCGGGGAGAGAGAATGATTCTGGGATTTCGTTGGTTTTGCTCAAGTCTCCCACTCTAGCTGCAACATGCAAAATCGGGAGTCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTGTACGATTCCTGGGTGTTGCTGAAGACAGAGAGGGTCCCCTAGTGAAGTTGTCTCCACCTAAAACAAGACTGTCGAGGGTTCCAAAGCCTAAGTCTCCTACAAA
ATGGGAACTTCTGGCTAAAAAACGAGGTATAAAGAACAGGAAAAAATACAATATTGTATATGATGAACAAACTCAAACATGGAAGCGTCGTCATGGTTATGATCGTGCAA
ATTATGAGGAGAACATACTCATCATTGAAGTCAGGATGACTGATGAGCAAGTTAGACAAGTTGAATTTGAGGAAAAAAATAATGCATGTGCAAATTGGCGCTTGAGACAG
GCTATTGCTACTCTATGTTGTATGCTTGGAATTGTTAAGTTTCAAGCTATTGCTCGGGGAAGAAGAGTGAGGCTTTCTGATGTAGGGTTTGAAGTGCAAAGCAAATGTAG
ATTAATGCAGCCACAGGACCATCTGAAATTGGCGAGGGAATACGCTCTTAAAGGACTGTATGTCACTTCAATCATCTTCTTTGATGGTGTTATAACTCAGATCAACAAGA
AACAAAACCCACCCCACACCGTAGCGATCGACAATAAGAGGCTGCGAGCGGCGGCGATGGCAAACAGCAGTGGCGGCGATGACAAAGGCAAGGAAGAGACGACGGCAAAA
GAGGGAGAAAGACGAAGGGTTTCGGGGAGAGAGAATGATTCTGGGATTTCGTTGGTTTTGCTCAAGTCTCCCACTCTAGCTGCAACATGCAAAATCGGGAGTCCATGA
Protein sequenceShow/hide protein sequence
MCVRFLGVAEDREGPLVKLSPPKTRLSRVPKPKSPTKWELLAKKRGIKNRKKYNIVYDEQTQTWKRRHGYDRANYEENILIIEVRMTDEQVRQVEFEEKNNACANWRLRQ
AIATLCCMLGIVKFQAIARGRRVRLSDVGFEVQSKCRLMQPQDHLKLAREYALKGLYVTSIIFFDGVITQINKKQNPPHTVAIDNKRLRAAAMANSSGGDDKGKEETTAK
EGERRRVSGRENDSGISLVLLKSPTLAATCKIGSP