CuGenDBv2

Gene ID	Lag0039319
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	keratin, type II cytoskeletal 3 isoform X2
Genome location	chr2:41270839..41274361
RNA-Seq Expression	Lag0039319
Synteny	Lag0039319
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022932820.1 keratin, type II cytoskeletal 2 epidermal isoform X2 [Cucurbita moschata]

8.3e-52

90.52

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Query:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNG+R EGGEDE+G++WKLPVLKSSRIG+LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLHGHQSIFPQGSI
        GDLL+G QSIFPQ  I
Subjt:  GDLLHGHQSIFPQGSI

XP_022974026.1 keratin, type II cytoskeletal 3 isoform X2 [Cucurbita maxima]

6.3e-52

90.52

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Query:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNG+R+EGGEDE+G++WKLPVLKSSRIG+LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLHGHQSIFPQGSI
        GDLL+G QSIFPQ  I
Subjt:  GDLLHGHQSIFPQGSI

XP_023521209.1 fibroin heavy chain isoform X2 [Cucurbita pepo subsp. pepo]

8.3e-52

90.52

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Query:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNG+R EG EDE+G++WKLPVLKSSRIG+LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLHGHQSIFPQGSI
        GDLL+GHQSIFPQ  I
Subjt:  GDLLHGHQSIFPQGSI

XP_038889093.1 ctenidin-1 isoform X1 [Benincasa hispida]

2.8e-52

92.92

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Query:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRN NGNR +GGEDE G++W LPVLKSSR GKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLHGHQSIFPQ
        GDLLHGHQSIFPQ
Subjt:  GDLLHGHQSIFPQ

XP_038889094.1 glycine-rich cell wall structural protein 1 isoform X2 [Benincasa hispida]

2.8e-52

92.92

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Query:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRN NGNR +GGEDE G++W LPVLKSSR GKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLHGHQSIFPQ
        GDLLHGHQSIFPQ
Subjt:  GDLLHGHQSIFPQ

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E347 glycine-rich cell wall structural protein 1

8.4e-50

90.18

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Query:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNGNR   GEDE G++W LPVLKSSR G LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLHGHQSIFP
        GD+L GHQSIFP
Subjt:  GDLLHGHQSIFP

A0A6J1EY31 keratin, type II cytoskeletal 2 epidermal isoform X1

4.4e-51

91.96

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Query:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNG+R EGGEDE+G++WKLPVLKSSRIG+LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLHGHQSIFP
        GDLL+G QSIFP
Subjt:  GDLLHGHQSIFP

A0A6J1F360 keratin, type II cytoskeletal 2 epidermal isoform X2

4.0e-52

90.52

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Query:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNG+R EGGEDE+G++WKLPVLKSSRIG+LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLHGHQSIFPQGSI
        GDLL+G QSIFPQ  I
Subjt:  GDLLHGHQSIFPQGSI

A0A6J1IA95 keratin, type II cytoskeletal 3 isoform X2

3.1e-52

90.52

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Query:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNG+R+EGGEDE+G++WKLPVLKSSRIG+LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLHGHQSIFPQGSI
        GDLL+G QSIFPQ  I
Subjt:  GDLLHGHQSIFPQGSI

A0A6J1ICW2 keratin, type II cytoskeletal 3 isoform X1

3.4e-51

91.96

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Query:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV
        MPRNMNG+R+EGGEDE+G++WKLPVLKSSRIG+LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLHGHQSIFP
        GDLL+G QSIFP
Subjt:  GDLLHGHQSIFP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G66820.1 glycine-rich protein

7.8e-08

51.43

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Query:  LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQ-----LGFGLGAGCGVGLGFGYGVGRGIAQDD-KRRY
        +GP  G G+GCG G GIGL GG G G    GL      LGFG+G G G G G+G+GVG G + DD K R+
Subjt:  LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQ-----LGFGLGAGCGVGLGFGYGVGRGIAQDD-KRRY

AT4G10330.1 glycine-rich protein

7.8e-32

67.02

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Query:  NRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNVG
        NR+  G+D+ G++WKLP ++   IGK+GPAFGLGVGCG GFG GL+GG GFGPG+PGLQ G G GAGCG+G+GFGYGVGRG A D  R Y NVG
Subjt:  NRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNVG

AT4G14301.1 unknown protein

8.9e-04

55.17

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Query:  IGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRG
        IGK G  FG G+G G GFG G+  G GFG GI G   G G G G G G GFG G+G+G
Subjt:  IGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRG

Sequences

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CDS sequence

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ATGCCTCGAAATATGAACGGGAACAGACAGGAAGGCGGAGAAGATGAAAATGGAGTAATATGGAAGCTTCCAGTTCTGAAATCTTCCCGTATCGGAAAGCTAGGTCCCGC
CTTCGGTCTGGGCGTTGGTTGTGGCGTCGGCTTTGGCATCGGCCTCGTCGGAGGTGCTGGATTTGGGCCCGGAATTCCTGGCTTACAACTTGGCTTTGGTCTTGGTGCTG
GATGTGGAGTTGGCTTAGGATTTGGTTATGGTGTTGGCAGAGGCATTGCCCAAGATGACAAACGGAGATACTCTAATGTTGGGGATCTATTACATGGTCATCAAAGTATT
TTTCCTCAAGGGTCCATCTTGACTGATGGTCGAGGTAAATTCAGATGGGATGCCAAACTAGATACACTTCTCTTCTTTGGATTCTTTGCCTACCACTTTGGGTCTTGGGG
ATGTGAGAGGTTTGCCTTATCTGAGTGTGTTGTCCTATCCGTCCCGTGCTTCGATGGGTCAAGAGATTCGGGTTGTTGCTCTCAATCCCTAGGTTATCAAGCTGCTCCAT
TCTTTGGAGGTGTTATTGGTCAATGGCCGTCTGGATGGGCTGCTTTAGTCTCAGTTGGCATTTAG

mRNA sequence

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Protein sequence

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MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDDKRRYSNVGDLLHGHQSI
FPQGSILTDGRGKFRWDAKLDTLLFFGFFAYHFGSWGCERFALSECVVLSVPCFDGSRDSGCCSQSLGYQAAPFFGGVIGQWPSGWAALVSVGI

Lag0039319 (gene) of Sponge gourd (AG-4) v1 genome