CuGenDBv2

Gene ID	Lag0039349
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	CCR4-NOT transcription complex subunit 1
Genome location	chr2:41857143..41859733
RNA-Seq Expression	Lag0039349
Synteny	Lag0039349
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0048830.1 CCR4-NOT transcription complex subunit 1 [Cucumis melo var. makuwa]

1.2e-11

58.97

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Query:  SGKTALLSRILAVTVRFIQKDAGEKKSSYNPTTILDCLL-----IGFLTLDID--------SFANAFHALHPLKIPTF
        SGKTALLSRILAVTVRFIQKDA EKK S+NP       +     +G L   +D        +FANAFHALHPLKIP F
Subjt:  SGKTALLSRILAVTVRFIQKDAGEKKSSYNPTTILDCLL-----IGFLTLDID--------SFANAFHALHPLKIPTF

TYK20782.1 CCR4-NOT transcription complex subunit 1 [Cucumis melo var. makuwa]

1.2e-11

58.97

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Query:  SGKTALLSRILAVTVRFIQKDAGEKKSSYNPTTILDCLL-----IGFLTLDID--------SFANAFHALHPLKIPTF
        SGKTALLSRILAVTVRFIQKDA EKK S+NP       +     +G L   +D        +FANAFHALHPLKIP F
Subjt:  SGKTALLSRILAVTVRFIQKDAGEKKSSYNPTTILDCLL-----IGFLTLDID--------SFANAFHALHPLKIPTF

XP_008437787.1 PREDICTED: CCR4-NOT transcription complex subunit 1 [Cucumis melo]

1.2e-11

58.97

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Query:  SGKTALLSRILAVTVRFIQKDAGEKKSSYNPTTILDCLL-----IGFLTLDID--------SFANAFHALHPLKIPTF
        SGKTALLSRILAVTVRFIQKDA EKK S+NP       +     +G L   +D        +FANAFHALHPLKIP F
Subjt:  SGKTALLSRILAVTVRFIQKDAGEKKSSYNPTTILDCLL-----IGFLTLDID--------SFANAFHALHPLKIPTF

XP_011650636.1 CCR4-NOT transcription complex subunit 1 [Cucumis sativus]

1.2e-11

58.97

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Query:  SGKTALLSRILAVTVRFIQKDAGEKKSSYNPTTILDCLL-----IGFLTLDID--------SFANAFHALHPLKIPTF
        SGKTALLSRILAVTVRFIQKDA EKK S+NP       +     +G L   +D        +FANAFHALHPLKIP F
Subjt:  SGKTALLSRILAVTVRFIQKDAGEKKSSYNPTTILDCLL-----IGFLTLDID--------SFANAFHALHPLKIPTF

XP_038898360.1 CCR4-NOT transcription complex subunit 1 [Benincasa hispida]

1.2e-11

58.97

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Query:  SGKTALLSRILAVTVRFIQKDAGEKKSSYNPTTILDCLL-----IGFLTLDID--------SFANAFHALHPLKIPTF
        SGKTALLSRILAVTVRFIQKDA EKK S+NP       +     +G L   +D        +FANAFHALHPLKIP F
Subjt:  SGKTALLSRILAVTVRFIQKDAGEKKSSYNPTTILDCLL-----IGFLTLDID--------SFANAFHALHPLKIPTF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L3M1 Uncharacterized protein

5.7e-12

58.97

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Query:  SGKTALLSRILAVTVRFIQKDAGEKKSSYNPTTILDCLL-----IGFLTLDID--------SFANAFHALHPLKIPTF
        SGKTALLSRILAVTVRFIQKDA EKK S+NP       +     +G L   +D        +FANAFHALHPLKIP F
Subjt:  SGKTALLSRILAVTVRFIQKDAGEKKSSYNPTTILDCLL-----IGFLTLDID--------SFANAFHALHPLKIPTF

A0A1S3AUU2 CCR4-NOT transcription complex subunit 1

5.7e-12

58.97

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Query:  SGKTALLSRILAVTVRFIQKDAGEKKSSYNPTTILDCLL-----IGFLTLDID--------SFANAFHALHPLKIPTF
        SGKTALLSRILAVTVRFIQKDA EKK S+NP       +     +G L   +D        +FANAFHALHPLKIP F
Subjt:  SGKTALLSRILAVTVRFIQKDAGEKKSSYNPTTILDCLL-----IGFLTLDID--------SFANAFHALHPLKIPTF

A0A5A7U0A1 CCR4-NOT transcription complex subunit 1

5.7e-12

58.97

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Query:  SGKTALLSRILAVTVRFIQKDAGEKKSSYNPTTILDCLL-----IGFLTLDID--------SFANAFHALHPLKIPTF
        SGKTALLSRILAVTVRFIQKDA EKK S+NP       +     +G L   +D        +FANAFHALHPLKIP F
Subjt:  SGKTALLSRILAVTVRFIQKDAGEKKSSYNPTTILDCLL-----IGFLTLDID--------SFANAFHALHPLKIPTF

A0A5D3DB11 CCR4-NOT transcription complex subunit 1

5.7e-12

58.97

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Query:  SGKTALLSRILAVTVRFIQKDAGEKKSSYNPTTILDCLL-----IGFLTLDID--------SFANAFHALHPLKIPTF
        SGKTALLSRILAVTVRFIQKDA EKK S+NP       +     +G L   +D        +FANAFHALHPLKIP F
Subjt:  SGKTALLSRILAVTVRFIQKDAGEKKSSYNPTTILDCLL-----IGFLTLDID--------SFANAFHALHPLKIPTF

A0A6J1IQF9 CCR4-NOT transcription complex subunit 1-like

9.7e-12

57.69

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Query:  SGKTALLSRILAVTVRFIQKDAGEKKSSYNPTTILDCLL-----IGFLTLDID--------SFANAFHALHPLKIPTF
        SGKT+LLSRILAVTVRFIQKDA EKK+S+NP       +     +G L   +D        +FANAFHALHPLKIP F
Subjt:  SGKTALLSRILAVTVRFIQKDAGEKKSSYNPTTILDCLL-----IGFLTLDID--------SFANAFHALHPLKIPTF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G02080.1 transcription regulators

2.0e-09

35.51

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Query:  FFVVAEQSRIIFEVFRVVNDGINTICWMESGKTALLSRILAVTVRFIQKDAGEKKSSYNPTTILDCL---LIGFLTLD----------IDSFANAFHALH
        F ++   ++++F + +   +         S +  LLS I+A TVRFIQKDA +KK+S N           L+   +LD          + +FANAFHAL 
Subjt:  FFVVAEQSRIIFEVFRVVNDGINTICWMESGKTALLSRILAVTVRFIQKDAGEKKSSYNPTTILDCL---LIGFLTLD----------IDSFANAFHALH

Query:  PLKIPTF
        PLKIP F
Subjt:  PLKIPTF

AT1G02080.2 transcription regulators

2.0e-09

35.51

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Query:  FFVVAEQSRIIFEVFRVVNDGINTICWMESGKTALLSRILAVTVRFIQKDAGEKKSSYNPTTILDCL---LIGFLTLD----------IDSFANAFHALH
        F ++   ++++F + +   +         S +  LLS I+A TVRFIQKDA +KK+S N           L+   +LD          + +FANAFHAL 
Subjt:  FFVVAEQSRIIFEVFRVVNDGINTICWMESGKTALLSRILAVTVRFIQKDAGEKKSSYNPTTILDCL---LIGFLTLD----------IDSFANAFHALH

Query:  PLKIPTF
        PLKIP F
Subjt:  PLKIPTF

Sequences

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CDS sequence

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ATGGTGGTGTTCTTCGTTGTTGCAGAGCAATCAAGAATCATTTTTGAAGTATTCAGAGTCGTCAACGACGGTATCAATACTATTTGCTGGATGGAATCTGGTAAAACTGC
TCTTTTATCAAGGATTCTAGCAGTGACTGTAAGATTCATTCAGAAAGATGCTGGGGAGAAGAAATCATCATATAATCCAACAACTATTTTAGATTGTTTGTTAATTGGCT
TCTTGACCTTGGATATTGACAGCTTTGCTAATGCATTTCATGCATTGCACCCTCTTAAGATTCCAACGTTCGGGTTAAGAGCAGGTTGTCCTATTATTTTAACTTGGGAA
AGCGAGTCCGTGCTCTTAGCTGCAACAATTCTCGGAGCTGTGGTTGCTAGAAAATAG

mRNA sequence

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Protein sequence

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MVVFFVVAEQSRIIFEVFRVVNDGINTICWMESGKTALLSRILAVTVRFIQKDAGEKKSSYNPTTILDCLLIGFLTLDIDSFANAFHALHPLKIPTFGLRAGCPIILTWE
SESVLLAATILGAVVARK

Lag0039349 (gene) of Sponge gourd (AG-4) v1 genome