; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0039356 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039356
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr2:42018875..42019754
RNA-Seq ExpressionLag0039356
SyntenyLag0039356
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0582377.1 hypothetical protein [Gossypium raimondii]1.0e-1332.72Show/hide
Query:  LELICVGAWAIWNDRNHMIHNRSIPSIATRCMWIQDYLMEFRRENGRHQYPPLFDAAVQHMIEIGEETIMHTDAAFDVINRKSGIGIIIRDKQGGLKVCS
        ++L C   W IW  RN ++H R   S       IQ YL+E      +        +  Q  +E+ E   +  DAAFD+ N +S +GI+ RD+ G +KV  
Subjt:  LELICVGAWAIWNDRNHMIHNRSIPSIATRCMWIQDYLMEFRRENGRHQYPPLFDAAVQHMIEIGEETIMHTDAAFDVINRKSGIGIIIRDKQGGLKVCS

Query:  SLSSQICTTPFCAEAVAVFEGLQLAKRLEEDCVTVVSDSLSLIQAINGIIPVESSIGSIIWD
        S      ++PF AEA A  E  +L   +  D VT++ DS ++I      I  +S +G+II D
Subjt:  SLSSQICTTPFCAEAVAVFEGLQLAKRLEEDCVTVVSDSLSLIQAINGIIPVESSIGSIIWD

MBA0756060.1 hypothetical protein [Gossypium gossypioides]3.0e-1333.53Show/hide
Query:  LICVGAWAIWNDRNHMIHNRSIPSIATRCMWIQDYLMEFRRENGRHQYPPLFDAAVQHMIEIGEETIMHTDAAFDVINRKSGIGIIIRDKQGGLKVCSSL
        + C   W IW  RN M+H R I S       IQ YLME   E  R +      A  Q   E     I+  D AFD+ N +S  GI++RD+   +K   S 
Subjt:  LICVGAWAIWNDRNHMIHNRSIPSIATRCMWIQDYLMEFRRENGRHQYPPLFDAAVQHMIEIGEETIMHTDAAFDVINRKSGIGIIIRDKQGGLKVCSSL

Query:  SSQICTTPFCAEAVAVFEGLQLAKRLEEDCVTVVSDSLSLIQAINGIIPVESSIGSIIWDIRELISCFQK
             ++ F AEA A  E  +L   +    VT++ DS  +I      +  +S IG+II DI+   S FQ+
Subjt:  SSQICTTPFCAEAVAVFEGLQLAKRLEEDCVTVVSDSLSLIQAINGIIPVESSIGSIIWDIRELISCFQK

MBA0786739.1 hypothetical protein [Gossypium trilobum]2.7e-1433.54Show/hide
Query:  WAIWNDRNHMIHNRSIPSIATRCMWIQDYLMEFRRENGRHQYPPLFDAAVQHMIEIGEETIMHTDAAFDVINRKSGIGIIIRDKQGGLKVCSSLSSQICT
        W IW  RN M+H R I S       IQ YL+E   E  R +      A  Q         I+  D AFD+ N +S  G+++RD++G +K   S+     +
Subjt:  WAIWNDRNHMIHNRSIPSIATRCMWIQDYLMEFRRENGRHQYPPLFDAAVQHMIEIGEETIMHTDAAFDVINRKSGIGIIIRDKQGGLKVCSSLSSQICT

Query:  TPFCAEAVAVFEGLQLAKRLEEDCVTVVSDSLSLIQAINGIIPVESSIGSIIWDIRELISCFQK
        +PF AEA A  E  +L   +    V ++ DS  +I      +  +S IG+II DI+   SCFQ+
Subjt:  TPFCAEAVAVFEGLQLAKRLEEDCVTVVSDSLSLIQAINGIIPVESSIGSIIWDIRELISCFQK

XP_012487767.1 PREDICTED: uncharacterized protein LOC105800965 [Gossypium raimondii]1.4e-1332.37Show/hide
Query:  LICVGAWAIWNDRNHMIHNRSIPSIATRCMWIQDYLMEFRRENGRHQYPPLFDAAVQHMIEIGEET---IMHTDAAFDVINRKSGIGIIIRDKQGGLKVC
        L C   W +W  RN +IH +   S       IQ YL+E     G        +AA +     G +T   I+  DAAFD+ N +S  GI++RD+ G ++  
Subjt:  LICVGAWAIWNDRNHMIHNRSIPSIATRCMWIQDYLMEFRRENGRHQYPPLFDAAVQHMIEIGEET---IMHTDAAFDVINRKSGIGIIIRDKQGGLKVC

Query:  SSLSSQICTTPFCAEAVAVFEGLQLAKRLEEDCVTVVSDSLSLIQAINGIIPVESSIGSIIWDIRELISCFQK
         S      ++PF AEA A  E  +L   +  + VT++ DS ++I         +S IG+II DI+   S FQ+
Subjt:  SSLSSQICTTPFCAEAVAVFEGLQLAKRLEEDCVTVVSDSLSLIQAINGIIPVESSIGSIIWDIRELISCFQK

XP_040960280.1 uncharacterized protein LOC121223215 [Gossypium hirsutum]1.4e-1332.16Show/hide
Query:  ELICVGAWAIWNDRNHMIHNRSIPSIATRCMWIQDYLMEFRRENGRHQYPPLFDAAVQHMIEIGEETIMHTDAAFDVINRKSGIGIIIRDKQGGLKVCSS
        ++ C   WAIWN RN ++H R I S       I+ YL E   E    +   L    VQ   E+     +H DAAFD    +S  G+I+RD +G L+   +
Subjt:  ELICVGAWAIWNDRNHMIHNRSIPSIATRCMWIQDYLMEFRRENGRHQYPPLFDAAVQHMIEIGEETIMHTDAAFDVINRKSGIGIIIRDKQGGLKVCSS

Query:  LSSQICTTPFCAEAVAVFEGLQLAKRLEEDCVTVVSDSLSLIQAINGIIPVESSIGSIIWDIRELISCFQK
              ++PF AEA A  + ++L   +    VT++ DS ++I+        +S IG++I DI++  S FQ+
Subjt:  LSSQICTTPFCAEAVAVFEGLQLAKRLEEDCVTVVSDSLSLIQAINGIIPVESSIGSIIWDIRELISCFQK

TrEMBL top hitse value%identityAlignment
A0A5B6UW38 Reverse transcriptase3.3e-1332.1Show/hide
Query:  CVGAWAIWNDRNHMIHNRSIPSIATRCMWIQDYLMEFRRENGRHQYPPLFDAAVQHMIEIGEETIMHTDAAFDVINRKSGIGIIIRDKQGGLKVCSSLSS
        CV  WAIW DRN  IH++   S      ++ +Y+ E    N   Q     D   +H  +  +E  ++ DAAFD  NR S  G++ RD  G + V ++   
Subjt:  CVGAWAIWNDRNHMIHNRSIPSIATRCMWIQDYLMEFRRENGRHQYPPLFDAAVQHMIEIGEETIMHTDAAFDVINRKSGIGIIIRDKQGGLKVCSSLSS

Query:  QICTTPFCAEAVAVFEGLQLAKRLEEDCVTVVSDSLSLIQAINGIIPVESSIGSIIWDIREL
        Q   + F AEA+A     Q+A  +  + +++  DSL++I+  N     +S IG+ I+DI++L
Subjt:  QICTTPFCAEAVAVFEGLQLAKRLEEDCVTVVSDSLSLIQAINGIIPVESSIGSIIWDIREL

A0A7J8NZF8 RNase H domain-containing protein5.0e-1432.72Show/hide
Query:  LELICVGAWAIWNDRNHMIHNRSIPSIATRCMWIQDYLMEFRRENGRHQYPPLFDAAVQHMIEIGEETIMHTDAAFDVINRKSGIGIIIRDKQGGLKVCS
        ++L C   W IW  RN ++H R   S       IQ YL+E      +        +  Q  +E+ E   +  DAAFD+ N +S +GI+ RD+ G +KV  
Subjt:  LELICVGAWAIWNDRNHMIHNRSIPSIATRCMWIQDYLMEFRRENGRHQYPPLFDAAVQHMIEIGEETIMHTDAAFDVINRKSGIGIIIRDKQGGLKVCS

Query:  SLSSQICTTPFCAEAVAVFEGLQLAKRLEEDCVTVVSDSLSLIQAINGIIPVESSIGSIIWD
        S      ++PF AEA A  E  +L   +  D VT++ DS ++I      I  +S +G+II D
Subjt:  SLSSQICTTPFCAEAVAVFEGLQLAKRLEEDCVTVVSDSLSLIQAINGIIPVESSIGSIIWD

A0A7J9D5S3 RNase H domain-containing protein1.5e-1333.53Show/hide
Query:  LICVGAWAIWNDRNHMIHNRSIPSIATRCMWIQDYLMEFRRENGRHQYPPLFDAAVQHMIEIGEETIMHTDAAFDVINRKSGIGIIIRDKQGGLKVCSSL
        + C   W IW  RN M+H R I S       IQ YLME   E  R +      A  Q   E     I+  D AFD+ N +S  GI++RD+   +K   S 
Subjt:  LICVGAWAIWNDRNHMIHNRSIPSIATRCMWIQDYLMEFRRENGRHQYPPLFDAAVQHMIEIGEETIMHTDAAFDVINRKSGIGIIIRDKQGGLKVCSSL

Query:  SSQICTTPFCAEAVAVFEGLQLAKRLEEDCVTVVSDSLSLIQAINGIIPVESSIGSIIWDIRELISCFQK
             ++ F AEA A  E  +L   +    VT++ DS  +I      +  +S IG+II DI+   S FQ+
Subjt:  SSQICTTPFCAEAVAVFEGLQLAKRLEEDCVTVVSDSLSLIQAINGIIPVESSIGSIIWDIRELISCFQK

A0A7J9FN68 RNase H domain-containing protein1.3e-1433.54Show/hide
Query:  WAIWNDRNHMIHNRSIPSIATRCMWIQDYLMEFRRENGRHQYPPLFDAAVQHMIEIGEETIMHTDAAFDVINRKSGIGIIIRDKQGGLKVCSSLSSQICT
        W IW  RN M+H R I S       IQ YL+E   E  R +      A  Q         I+  D AFD+ N +S  G+++RD++G +K   S+     +
Subjt:  WAIWNDRNHMIHNRSIPSIATRCMWIQDYLMEFRRENGRHQYPPLFDAAVQHMIEIGEETIMHTDAAFDVINRKSGIGIIIRDKQGGLKVCSSLSSQICT

Query:  TPFCAEAVAVFEGLQLAKRLEEDCVTVVSDSLSLIQAINGIIPVESSIGSIIWDIRELISCFQK
        +PF AEA A  E  +L   +    V ++ DS  +I      +  +S IG+II DI+   SCFQ+
Subjt:  TPFCAEAVAVFEGLQLAKRLEEDCVTVVSDSLSLIQAINGIIPVESSIGSIIWDIRELISCFQK

A0A7J9IIF5 Uncharacterized protein2.5e-1331.11Show/hide
Query:  MLYSGVREQNSSQELNLELICVGAWAIWNDRNHMIHNRSIPSIATRCMWIQDYLMEFRRENGRHQYPPLFDAAVQHMIEIGEETIMHTDAAFDVINRKSG
        +L  G +EQN        + C   W IWN RN ++H R   S       I+ Y+ E     G+ ++    D   +H  E  E+TI+  DAAF+    +S 
Subjt:  MLYSGVREQNSSQELNLELICVGAWAIWNDRNHMIHNRSIPSIATRCMWIQDYLMEFRRENGRHQYPPLFDAAVQHMIEIGEETIMHTDAAFDVINRKSG

Query:  IGIIIRDKQGGLKVCSSLSSQICTTPFCAEAVAVFEGLQLAKRLEEDCVTVVSDSLSLIQAINGIIPVESSIGSIIWDIR
         G+I R+++G +KV  +      ++PF AEA+A  + ++L   L    VT+  DS ++I+        +SSIG++I DI+
Subjt:  IGIIIRDKQGGLKVCSSLSSQICTTPFCAEAVAVFEGLQLAKRLEEDCVTVVSDSLSLIQAINGIIPVESSIGSIIWDIR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G10000.1 Ribonuclease H-like superfamily protein9.4e-0523.12Show/hide
Query:  WAIWNDRNHMI-HNRSIPSIATRCMWIQDYLMEFRRENGRHQYPPLFDAAVQ--HMIEIGEETIMHTDAAFDVINRKSGIGIIIRDKQGGLKVCSSLSS-
        W IW  RN +I  N     I T    +QD L     ++ +   P +  A  +      +  + + + DAA+   +  +G G + +      K  ++ S+ 
Subjt:  WAIWNDRNHMI-HNRSIPSIATRCMWIQDYLMEFRRENGRHQYPPLFDAAVQ--HMIEIGEETIMHTDAAFDVINRKSGIGIIIRDKQGGLKVCSSLSS-

Query:  -QICTTPFCAEAVAVFEGLQLAKRLEEDCVTVVSDSLSLIQAINGIIPVESSIGSIIWDIRELISCFQKEWRSNFPDWLISLACQECNLFVSPRANISV
         +   +P  AEA A+   +  A +LE   + V+SDS S++ A+N  + +    G ++ +IR + + F+       P  + S+A     L +    NI +
Subjt:  -QICTTPFCAEAVAVFEGLQLAKRLEEDCVTVVSDSLSLIQAINGIIPVESSIGSIIWDIRELISCFQKEWRSNFPDWLISLACQECNLFVSPRANISV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCGATTGATGGTGGATGTACTTTGTGCCATACTACTCCGGAGACGACTGACCATGCTTTATTCAGGTGTTAGAGAGCAAAACAGTAGTCAGGAACTCAATCTGGA
ACTTATATGTGTGGGAGCTTGGGCGATATGGAATGATAGAAATCATATGATTCATAATCGCTCTATTCCGAGCATTGCCACTAGGTGCATGTGGATCCAAGATTATCTAA
TGGAGTTTCGAAGGGAAAACGGGAGACATCAATATCCTCCTTTGTTTGATGCAGCAGTCCAGCATATGATTGAGATAGGTGAGGAGACGATAATGCATACGGATGCTGCA
TTTGATGTGATAAACAGAAAGTCTGGGATTGGAATCATCATTAGAGATAAGCAGGGCGGTTTGAAGGTGTGTTCATCGTTGTCATCACAAATTTGCACAACTCCTTTTTG
TGCTGAGGCAGTAGCAGTATTCGAAGGGCTTCAGTTAGCAAAACGTTTGGAAGAGGATTGTGTGACTGTTGTTTCTGATTCATTGTCTTTGATTCAAGCCATTAATGGGA
TTATTCCTGTTGAGTCAAGCATTGGCTCTATTATATGGGATATAAGGGAATTAATTTCCTGTTTCCAAAAGGAATGGAGATCAAACTTTCCTGATTGGTTAATTAGTCTA
GCTTGTCAGGAATGTAATCTCTTTGTATCCCCTAGGGCAAATATTTCGGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCCGATTGATGGTGGATGTACTTTGTGCCATACTACTCCGGAGACGACTGACCATGCTTTATTCAGGTGTTAGAGAGCAAAACAGTAGTCAGGAACTCAATCTGGA
ACTTATATGTGTGGGAGCTTGGGCGATATGGAATGATAGAAATCATATGATTCATAATCGCTCTATTCCGAGCATTGCCACTAGGTGCATGTGGATCCAAGATTATCTAA
TGGAGTTTCGAAGGGAAAACGGGAGACATCAATATCCTCCTTTGTTTGATGCAGCAGTCCAGCATATGATTGAGATAGGTGAGGAGACGATAATGCATACGGATGCTGCA
TTTGATGTGATAAACAGAAAGTCTGGGATTGGAATCATCATTAGAGATAAGCAGGGCGGTTTGAAGGTGTGTTCATCGTTGTCATCACAAATTTGCACAACTCCTTTTTG
TGCTGAGGCAGTAGCAGTATTCGAAGGGCTTCAGTTAGCAAAACGTTTGGAAGAGGATTGTGTGACTGTTGTTTCTGATTCATTGTCTTTGATTCAAGCCATTAATGGGA
TTATTCCTGTTGAGTCAAGCATTGGCTCTATTATATGGGATATAAGGGAATTAATTTCCTGTTTCCAAAAGGAATGGAGATCAAACTTTCCTGATTGGTTAATTAGTCTA
GCTTGTCAGGAATGTAATCTCTTTGTATCCCCTAGGGCAAATATTTCGGTTTAA
Protein sequenceShow/hide protein sequence
MSRLMVDVLCAILLRRRLTMLYSGVREQNSSQELNLELICVGAWAIWNDRNHMIHNRSIPSIATRCMWIQDYLMEFRRENGRHQYPPLFDAAVQHMIEIGEETIMHTDAA
FDVINRKSGIGIIIRDKQGGLKVCSSLSSQICTTPFCAEAVAVFEGLQLAKRLEEDCVTVVSDSLSLIQAINGIIPVESSIGSIIWDIRELISCFQKEWRSNFPDWLISL
ACQECNLFVSPRANISV