CuGenDBv2

Gene ID	Lag0039369
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Glycerophosphodiester phosphodiesterase
Genome location	chr2:42306797..42313087
RNA-Seq Expression	Lag0039369
Synteny	Lag0039369
Gene Ontology terms	GO:0006071 - glycerol metabolic process (biological process) GO:0006629 - lipid metabolic process (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0008889 - glycerophosphodiester phosphodiesterase activity (molecular function)
InterPro domains	IPR017946 - PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily IPR030395 - Glycerophosphodiester phosphodiesterase domain IPR044236 - Glycerophosphodiester phosphodiesterase GDPD4

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0039349.1 glycerophosphodiester phosphodiesterase GDPD4 isoform X2 [Cucumis melo var. makuwa]

7.3e-91

83.81

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Query:  RRVFGWNLERNNRISREVERLGEEIKDLGAVYQHTHKLLDFNIPTIEEALALISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSL
        +R+ G N  +    SR      +EIK+L AVYQHTHKLLDFNIPTIEEAL LISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSL
Subjt:  RRVFGWNLERNNRISREVERLGEEIKDLGAVYQHTHKLLDFNIPTIEEALALISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSL

Query:  ARDIIRLSSNIKVGYIVMKDPSTGERTNLLRMKGAKVVGTYHPLIDEKLMRIVHRRDKKVYAWTVDDIDSMKRMLAEGVDAVVTSNPSLLGSVMQDIRTT
        ARDIIR S +IKVGYIVMKDPSTGERTNLLRMKGAKVVG YHPLID  LMRI+HRRD+KVYAWTVDDI+SMKRML EGVDAVVTSNP+LLGSVMQD RTT
Subjt:  ARDIIRLSSNIKVGYIVMKDPSTGERTNLLRMKGAKVVGTYHPLIDEKLMRIVHRRDKKVYAWTVDDIDSMKRMLAEGVDAVVTSNPSLLGSVMQDIRTT

Query:  CLENGFSLSS
        CLENGFS+SS
Subjt:  CLENGFSLSS

KAG7025128.1 Glycerophosphodiester phosphodiesterase GDPD4, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.8e-90

89.36

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Query:  EEIKDLGAVYQHTHKLLDFNIPTIEEALALISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSLARDIIRLSSNIKVGYIVMKDPS
        +EIK+LGA YQHT+KLLDFNIPTIEEAL LISKSV+QVILDAK+GPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSL RDII+LSS++KVGYIVM DPS
Subjt:  EEIKDLGAVYQHTHKLLDFNIPTIEEALALISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSLARDIIRLSSNIKVGYIVMKDPS

Query:  TGERTNLLRMKGAKVVGTYHPLIDEKLMRIVHRRDKKVYAWTVDDIDSMKRMLAEGVDAVVTSNPSLLGSVMQDIRTTCLENGFSLSS
        TGERTNLLRMKGAKVVG YHPLIDE LMR++HRRDKKVYAWTVDD+DSMKRML EGVDAVVTSNP+LLGSVMQDIRTTCLENGFSL S
Subjt:  TGERTNLLRMKGAKVVGTYHPLIDEKLMRIVHRRDKKVYAWTVDDIDSMKRMLAEGVDAVVTSNPSLLGSVMQDIRTTCLENGFSLSS

XP_008459511.1 PREDICTED: glycerophosphodiester phosphodiesterase GDPD4 isoform X2 [Cucumis melo]

2.1e-90

83.33

Show/hide

Query:  RRVFGWNLERNNRISREVERLGEEIKDLGAVYQHTHKLLDFNIPTIEEALALISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSL
        +R+ G N  +    SR      +EIK+L AVYQHTHKLLDFNIPTIEEAL LISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSL
Subjt:  RRVFGWNLERNNRISREVERLGEEIKDLGAVYQHTHKLLDFNIPTIEEALALISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSL

Query:  ARDIIRLSSNIKVGYIVMKDPSTGERTNLLRMKGAKVVGTYHPLIDEKLMRIVHRRDKKVYAWTVDDIDSMKRMLAEGVDAVVTSNPSLLGSVMQDIRTT
        ARDIIR S +IKVGYIVMKDPSTGERTNLLRMKGAKVVG YHPLID  L+RI+HRRD+KVYAWTVDDI+SMKRML EGVDAVVTSNP+LLGSVMQD RTT
Subjt:  ARDIIRLSSNIKVGYIVMKDPSTGERTNLLRMKGAKVVGTYHPLIDEKLMRIVHRRDKKVYAWTVDDIDSMKRMLAEGVDAVVTSNPSLLGSVMQDIRTT

Query:  CLENGFSLSS
        CLENGFS+SS
Subjt:  CLENGFSLSS

XP_022930187.1 glycerophosphodiester phosphodiesterase GDPD4 [Cucurbita moschata]

2.8e-90

89.36

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Query:  EEIKDLGAVYQHTHKLLDFNIPTIEEALALISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSLARDIIRLSSNIKVGYIVMKDPS
        +EIK+LGA YQHT+KLLDFNIPTIEEAL LISKSV+QVILDAK+GPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSL RDII+LSS++KVGYIVM DPS
Subjt:  EEIKDLGAVYQHTHKLLDFNIPTIEEALALISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSLARDIIRLSSNIKVGYIVMKDPS

Query:  TGERTNLLRMKGAKVVGTYHPLIDEKLMRIVHRRDKKVYAWTVDDIDSMKRMLAEGVDAVVTSNPSLLGSVMQDIRTTCLENGFSLSS
        TGERTNLLRMKGAKVVG YHPLIDE LMR++HRRDKKVYAWTVDD+DSMKRML EGVDAVVTSNP+LLGSVMQDIRTTCLENGFSL S
Subjt:  TGERTNLLRMKGAKVVGTYHPLIDEKLMRIVHRRDKKVYAWTVDDIDSMKRMLAEGVDAVVTSNPSLLGSVMQDIRTTCLENGFSLSS

XP_022974073.1 glycerophosphodiester phosphodiesterase GDPD4 [Cucurbita maxima]

1.6e-90

81.9

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Query:  RRVFGWNLERNNRISREVERLGEEIKDLGAVYQHTHKLLDFNIPTIEEALALISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSL
        +R+ G N+ +    S       +EIK+LGA YQHT+KLLDFNIPTIEEAL LISKSV+QVILDAK+GPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSL
Subjt:  RRVFGWNLERNNRISREVERLGEEIKDLGAVYQHTHKLLDFNIPTIEEALALISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSL

Query:  ARDIIRLSSNIKVGYIVMKDPSTGERTNLLRMKGAKVVGTYHPLIDEKLMRIVHRRDKKVYAWTVDDIDSMKRMLAEGVDAVVTSNPSLLGSVMQDIRTT
         RDII+LSS++KVGYIVM DPSTGERTNLLRMKGAKVVG YHPLIDE LMR++HRRDKKVYAWTVDD+DSMKRML EGVDAVVTSNP+LLGSVMQDIRTT
Subjt:  ARDIIRLSSNIKVGYIVMKDPSTGERTNLLRMKGAKVVGTYHPLIDEKLMRIVHRRDKKVYAWTVDDIDSMKRMLAEGVDAVVTSNPSLLGSVMQDIRTT

Query:  CLENGFSLSS
        CLENGFSL S
Subjt:  CLENGFSLSS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KSR2 Glycerophosphodiester phosphodiesterase

1.1e-89

89.89

Show/hide

Query:  EEIKDLGAVYQHTHKLLDFNIPTIEEALALISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSLARDIIRLSSNIKVGYIVMKDPS
        +EIK+LGAVYQHTHKLLDFNIPTIEEAL  ISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSLARDIIR SS+IKVGYIVMKDPS
Subjt:  EEIKDLGAVYQHTHKLLDFNIPTIEEALALISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSLARDIIRLSSNIKVGYIVMKDPS

Query:  TGERTNLLRMKGAKVVGTYHPLIDEKLMRIVHRRDKKVYAWTVDDIDSMKRMLAEGVDAVVTSNPSLLGSVMQDIRTTCLENGFSLSS
        TGERTNLLRMKGAKVVG YH LID  LMRI+HRRD+K YAWTVDDI+SMKRML EGVDAVVTSNP+LLGSVMQ+ RTTCLENGFS+SS
Subjt:  TGERTNLLRMKGAKVVGTYHPLIDEKLMRIVHRRDKKVYAWTVDDIDSMKRMLAEGVDAVVTSNPSLLGSVMQDIRTTCLENGFSLSS

A0A1S3CAB9 Glycerophosphodiester phosphodiesterase

1.0e-90

83.33

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Query:  RRVFGWNLERNNRISREVERLGEEIKDLGAVYQHTHKLLDFNIPTIEEALALISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSL
        +R+ G N  +    SR      +EIK+L AVYQHTHKLLDFNIPTIEEAL LISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSL
Subjt:  RRVFGWNLERNNRISREVERLGEEIKDLGAVYQHTHKLLDFNIPTIEEALALISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSL

Query:  ARDIIRLSSNIKVGYIVMKDPSTGERTNLLRMKGAKVVGTYHPLIDEKLMRIVHRRDKKVYAWTVDDIDSMKRMLAEGVDAVVTSNPSLLGSVMQDIRTT
        ARDIIR S +IKVGYIVMKDPSTGERTNLLRMKGAKVVG YHPLID  L+RI+HRRD+KVYAWTVDDI+SMKRML EGVDAVVTSNP+LLGSVMQD RTT
Subjt:  ARDIIRLSSNIKVGYIVMKDPSTGERTNLLRMKGAKVVGTYHPLIDEKLMRIVHRRDKKVYAWTVDDIDSMKRMLAEGVDAVVTSNPSLLGSVMQDIRTT

Query:  CLENGFSLSS
        CLENGFS+SS
Subjt:  CLENGFSLSS

A0A5A7TDK6 Glycerophosphodiester phosphodiesterase

3.5e-91

83.81

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Query:  RRVFGWNLERNNRISREVERLGEEIKDLGAVYQHTHKLLDFNIPTIEEALALISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSL
        +R+ G N  +    SR      +EIK+L AVYQHTHKLLDFNIPTIEEAL LISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSL
Subjt:  RRVFGWNLERNNRISREVERLGEEIKDLGAVYQHTHKLLDFNIPTIEEALALISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSL

Query:  ARDIIRLSSNIKVGYIVMKDPSTGERTNLLRMKGAKVVGTYHPLIDEKLMRIVHRRDKKVYAWTVDDIDSMKRMLAEGVDAVVTSNPSLLGSVMQDIRTT
        ARDIIR S +IKVGYIVMKDPSTGERTNLLRMKGAKVVG YHPLID  LMRI+HRRD+KVYAWTVDDI+SMKRML EGVDAVVTSNP+LLGSVMQD RTT
Subjt:  ARDIIRLSSNIKVGYIVMKDPSTGERTNLLRMKGAKVVGTYHPLIDEKLMRIVHRRDKKVYAWTVDDIDSMKRMLAEGVDAVVTSNPSLLGSVMQDIRTT

Query:  CLENGFSLSS
        CLENGFS+SS
Subjt:  CLENGFSLSS

A0A6J1EPP0 Glycerophosphodiester phosphodiesterase

1.3e-90

89.36

Show/hide

Query:  EEIKDLGAVYQHTHKLLDFNIPTIEEALALISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSLARDIIRLSSNIKVGYIVMKDPS
        +EIK+LGA YQHT+KLLDFNIPTIEEAL LISKSV+QVILDAK+GPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSL RDII+LSS++KVGYIVM DPS
Subjt:  EEIKDLGAVYQHTHKLLDFNIPTIEEALALISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSLARDIIRLSSNIKVGYIVMKDPS

Query:  TGERTNLLRMKGAKVVGTYHPLIDEKLMRIVHRRDKKVYAWTVDDIDSMKRMLAEGVDAVVTSNPSLLGSVMQDIRTTCLENGFSLSS
        TGERTNLLRMKGAKVVG YHPLIDE LMR++HRRDKKVYAWTVDD+DSMKRML EGVDAVVTSNP+LLGSVMQDIRTTCLENGFSL S
Subjt:  TGERTNLLRMKGAKVVGTYHPLIDEKLMRIVHRRDKKVYAWTVDDIDSMKRMLAEGVDAVVTSNPSLLGSVMQDIRTTCLENGFSLSS

A0A6J1IF47 Glycerophosphodiester phosphodiesterase

7.9e-91

81.9

Show/hide

Query:  RRVFGWNLERNNRISREVERLGEEIKDLGAVYQHTHKLLDFNIPTIEEALALISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSL
        +R+ G N+ +    S       +EIK+LGA YQHT+KLLDFNIPTIEEAL LISKSV+QVILDAK+GPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSL
Subjt:  RRVFGWNLERNNRISREVERLGEEIKDLGAVYQHTHKLLDFNIPTIEEALALISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSL

Query:  ARDIIRLSSNIKVGYIVMKDPSTGERTNLLRMKGAKVVGTYHPLIDEKLMRIVHRRDKKVYAWTVDDIDSMKRMLAEGVDAVVTSNPSLLGSVMQDIRTT
         RDII+LSS++KVGYIVM DPSTGERTNLLRMKGAKVVG YHPLIDE LMR++HRRDKKVYAWTVDD+DSMKRML EGVDAVVTSNP+LLGSVMQDIRTT
Subjt:  ARDIIRLSSNIKVGYIVMKDPSTGERTNLLRMKGAKVVGTYHPLIDEKLMRIVHRRDKKVYAWTVDDIDSMKRMLAEGVDAVVTSNPSLLGSVMQDIRTT

Query:  CLENGFSLSS
        CLENGFSL S
Subjt:  CLENGFSLSS

SwissProt top hits

e value

%identity

Alignment

F4I8H8 Glycerophosphodiester phosphodiesterase GDPD4

1.6e-64

65.05

Show/hide

Query:  EEIKDLGAVYQHTHKLLDFNIPTIEEALALISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSLARDIIRLSSNIKVGYIVMKDPS
        ++IK+L         L    IPT+EEALALIS SV++VILDAKVGPP YE GLA+DI+S++E+ QC NC+VWAKSD+LARDIIR + +  VGYIVM DP 
Subjt:  EEIKDLGAVYQHTHKLLDFNIPTIEEALALISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSLARDIIRLSSNIKVGYIVMKDPS

Query:  TGERTNLLRMKGAKVVGTYHPLIDEKLMRIVHRRDKKVYAWTVDDIDSMKRMLAEGVDAVVTSNPSLLGSVMQDIRTTCLENGFSL
        TG R +LLRMKGA+VVG YHPLIDE+L+R+V RR+K+VYAWTVDD D MKRML  GVDAVVTS+PS+   +M+D+RT CLE GFS+
Subjt:  TGERTNLLRMKGAKVVGTYHPLIDEKLMRIVHRRDKKVYAWTVDDIDSMKRMLAEGVDAVVTSNPSLLGSVMQDIRTTCLENGFSL

Arabidopsis top hits

e value

%identity

Alignment

AT1G71340.1 PLC-like phosphodiesterases superfamily protein

1.1e-65

65.05

Show/hide

Query:  EEIKDLGAVYQHTHKLLDFNIPTIEEALALISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSLARDIIRLSSNIKVGYIVMKDPS
        ++IK+L         L    IPT+EEALALIS SV++VILDAKVGPP YE GLA+DI+S++E+ QC NC+VWAKSD+LARDIIR + +  VGYIVM DP 
Subjt:  EEIKDLGAVYQHTHKLLDFNIPTIEEALALISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSLARDIIRLSSNIKVGYIVMKDPS

Query:  TGERTNLLRMKGAKVVGTYHPLIDEKLMRIVHRRDKKVYAWTVDDIDSMKRMLAEGVDAVVTSNPSLLGSVMQDIRTTCLENGFSL
        TG R +LLRMKGA+VVG YHPLIDE+L+R+V RR+K+VYAWTVDD D MKRML  GVDAVVTS+PS+   +M+D+RT CLE GFS+
Subjt:  TGERTNLLRMKGAKVVGTYHPLIDEKLMRIVHRRDKKVYAWTVDDIDSMKRMLAEGVDAVVTSNPSLLGSVMQDIRTTCLENGFSL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGTTGTCCATTGCTGGAGGAGGGTATTTGGTTGGAATTTGGAAAGAAACAATAGAATTTCTAGAGAGGTTGAGAGATTGGGTGAGGAGATAAAAGATCTTGGTGCTGT
TTATCAACACACTCATAAATTGCTGGATTTCAACATTCCTACAATTGAAGAAGCTTTGGCGTTAATATCAAAATCAGTTCAGCAGGTGATTCTAGATGCAAAGGTTGGAC
CACCGTCATATGAAAATGGGCTTGCAAAAGATATAATTTCTGTTGTTGAGAAGACACAATGTAAGAATTGTCTCGTATGGGCGAAGAGTGATAGCTTAGCAAGGGACATA
ATCAGATTATCATCAAATATCAAGGTGGGGTACATCGTAATGAAGGACCCATCTACAGGGGAAAGAACCAACTTACTGAGAATGAAAGGAGCCAAAGTGGTTGGTACCTA
TCATCCATTGATTGATGAAAAGCTTATGCGAATAGTGCACAGGAGGGATAAAAAGGTGTATGCCTGGACAGTTGATGATATCGATTCGATGAAGAGAATGTTAGCCGAGG
GAGTAGATGCTGTCGTTACGAGCAACCCATCATTACTTGGAAGTGTAATGCAAGATATCAGAACTACATGCCTTGAGAATGGTTTTTCACTTTCATCATGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MVVHCWRRVFGWNLERNNRISREVERLGEEIKDLGAVYQHTHKLLDFNIPTIEEALALISKSVQQVILDAKVGPPSYENGLAKDIISVVEKTQCKNCLVWAKSDSLARDI
IRLSSNIKVGYIVMKDPSTGERTNLLRMKGAKVVGTYHPLIDEKLMRIVHRRDKKVYAWTVDDIDSMKRMLAEGVDAVVTSNPSLLGSVMQDIRTTCLENGFSLSS

Lag0039369 (gene) of Sponge gourd (AG-4) v1 genome