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Lag0039370 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039370
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr2:42313197..42314441
RNA-Seq ExpressionLag0039370
SyntenyLag0039370
Gene Ontology termsGO:0006284 - base-excision repair (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity (molecular function)
GO:0008081 - phosphoric diester hydrolase activity (molecular function)
GO:0008311 - double-stranded DNA 3'-5' exodeoxyribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG2698405.1 hypothetical protein I3760_07G150000 [Carya illinoinensis]2.7e-0746.88Show/hide
Query:  QESRLAMVDRRIVKSIWSSRHIGWLSLYASNSAGGIIVMWKENMVDVVDSVLGAYSV--SLNCV
        QE++L M+DRR+V+S+WS  HI W  L ++ ++GGIIVMW   MV+ ++ ++G Y+V  S  CV
Subjt:  QESRLAMVDRRIVKSIWSSRHIGWLSLYASNSAGGIIVMWKENMVDVVDSVLGAYSV--SLNCV

KAG6667899.1 hypothetical protein CIPAW_01G132400 [Carya illinoinensis]2.1e-0737.84Show/hide
Query:  QESRLAMVDRRIVKSIWSSRHIGWLSLYASNSAGGIIVMWKENMVDVVDSVLGAYSVSLNCVFHGRLVGWVSGF
        QE++L ++ RRI++SIW+ + +GW+ L +  ++GGI+VMW + +V+ +D  +G YSV   C F     G++  F
Subjt:  QESRLAMVDRRIVKSIWSSRHIGWLSLYASNSAGGIIVMWKENMVDVVDSVLGAYSVSLNCVFHGRLVGWVSGF

TYK03140.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.5e-0736.14Show/hide
Query:  ESRLAMVDRRIVKSIWSSRHIGWLSLYASNSAGGIIVMWKENMVDVVDSVLGAYSVSLNCVFHGRLVGWVSGFMAPVVIRKER
        E+RL + ++RI+KS+W S  I W++  A  S+GGI+++W      ++    G +S+S N +F+  L  W++G   PV  R+ER
Subjt:  ESRLAMVDRRIVKSIWSSRHIGWLSLYASNSAGGIIVMWKENMVDVVDSVLGAYSVSLNCVFHGRLVGWVSGFMAPVVIRKER

XP_010269625.1 PREDICTED: uncharacterized protein LOC104606223 [Nelumbo nucifera]4.6e-0744.26Show/hide
Query:  QESRLAMVDRRIVKSIWSSRHIGWLSLYASNSAGGIIVMWKENMVDVVDSVLGAYSVSLNC
        QES+L  +D R V+S W SR +GW    +  ++GGI+ +WKE++V+VV+ ++G +SVS+ C
Subjt:  QESRLAMVDRRIVKSIWSSRHIGWLSLYASNSAGGIIVMWKENMVDVVDSVLGAYSVSLNC

XP_031739979.1 uncharacterized protein LOC116403332 [Cucumis sativus]2.8e-1242.86Show/hide
Query:  QESRLAMVDRRIVKSIWSSRHIGWLSLYASNSAGGIIVMWKENMVDVVDSVLGAYSVSLNCVFHGRLVGWVSGFMAP
        Q+S+++ V+R +VKS+WSS  +GW +L A  S+GGI+++WKE+ + VVDS+ G +S+S++  F+    GW++G   P
Subjt:  QESRLAMVDRRIVKSIWSSRHIGWLSLYASNSAGGIIVMWKENMVDVVDSVLGAYSVSLNCVFHGRLVGWVSGFMAP

TrEMBL top hitse value%identityAlignment
A0A2N9EBT0 Reverse transcriptase domain-containing protein1.4e-0939.51Show/hide
Query:  YQESRLAMVDRRIVKSIWSSRHIGWLSLYASNSAGGIIVMWKENMVDVVDSVLGAYSVSLNCVFHGRLVGWV---SGFMAP
        Y+E++L+ +D  +V+S+WS+ ++ W++L A N+AGG+++MW + M+D++DSV+G++ VS  C + G + G+V   SG   P
Subjt:  YQESRLAMVDRRIVKSIWSSRHIGWLSLYASNSAGGIIVMWKENMVDVVDSVLGAYSVSLNCVFHGRLVGWV---SGFMAP

A0A2N9FHL6 Reverse transcriptase domain-containing protein1.4e-0942.5Show/hide
Query:  ESRLAMVDRRIVKSIWSSRHIGWLSLYASNSAGGIIVMWKENMVDVVDSVLGAYSVSLNCVFHGRLVG--WV-SGFMAPV
        E++LA +D R+++S+W ++H+ W++L A+N+AGGI+++W   +V  VD ++G YSVS  C +HG + G  WV SG   P+
Subjt:  ESRLAMVDRRIVKSIWSSRHIGWLSLYASNSAGGIIVMWKENMVDVVDSVLGAYSVSLNCVFHGRLVG--WV-SGFMAPV

A0A2N9FKU6 Reverse transcriptase domain-containing protein3.7e-1043.21Show/hide
Query:  QESRLAMVDRRIVKSIWSSRHIGWLSLYASNSAGGIIVMWKENMVDVVDSVLGAYSVSLNCVFHGRLVG--WV-SGFMAPV
        QE++LA +D R+++S+W ++H+ W++L A+N+AGGI+++W   +V  VD ++G YSVS  C +HG + G  WV SG   P+
Subjt:  QESRLAMVDRRIVKSIWSSRHIGWLSLYASNSAGGIIVMWKENMVDVVDSVLGAYSVSLNCVFHGRLVG--WV-SGFMAPV

A0A2N9FRJ8 Reverse transcriptase domain-containing protein8.2e-1046.97Show/hide
Query:  QESRLAMVDRRIVKSIWSSRHIGWLSLYASNSAGGIIVMWKENMVDVVDSVLGAYSVSLNCVFHGR
        QE++LA +D R+V+S+W  +H+ W++L A+NS GGI++MW   +V+ VD+ +G YSVS  C +HG+
Subjt:  QESRLAMVDRRIVKSIWSSRHIGWLSLYASNSAGGIIVMWKENMVDVVDSVLGAYSVSLNCVFHGR

A0A2N9I9Z7 Uncharacterized protein1.4e-0942.5Show/hide
Query:  ESRLAMVDRRIVKSIWSSRHIGWLSLYASNSAGGIIVMWKENMVDVVDSVLGAYSVSLNCVFHGRLVG--WV-SGFMAPV
        E++LA +D R+++S+W ++H+ W++L A+N+AGGI+++W   +V  VD ++G YSVS  C +HG + G  WV SG   P+
Subjt:  ESRLAMVDRRIVKSIWSSRHIGWLSLYASNSAGGIIVMWKENMVDVVDSVLGAYSVSLNCVFHGRLVG--WV-SGFMAPV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAAACAGATTTTGCGTCAAGCAAAAAGATGCCAAGGAGGATTCCACCCTAGAGATAAAGACTAGTCTGACTGCCCATCTTGTTTCTACATGGTACCAAGACTCCTG
CACTTCAGGTATTTATGGCTCCATGGCACTTGACAAGTATCAGGAGTCCAGACTAGCGATGGTTGATAGGAGGATTGTTAAGTCCATTTGGTCCTCTAGGCACATAGGAT
GGTTGTCCCTATATGCTTCGAACTCAGCTGGAGGTATCATTGTTATGTGGAAGGAAAATATGGTTGATGTCGTCGACTCTGTTCTGGGAGCATACTCTGTCTCCCTAAAT
TGTGTCTTCCATGGTCGGTTAGTTGGGTGGGTCTCGGGGTTTATGGCCCCTGTTGTTATAAGGAAAGAAAGAGGTTCCTCAGAGAGTTATATGACCTTTCAGGGCTCTGC
CAGGGAATCTGGTGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGATAAACAGATTTTGCGTCAAGCAAAAAGATGCCAAGGAGGATTCCACCCTAGAGATAAAGACTAGTCTGACTGCCCATCTTGTTTCTACATGGTACCAAGACTCCTG
CACTTCAGGTATTTATGGCTCCATGGCACTTGACAAGTATCAGGAGTCCAGACTAGCGATGGTTGATAGGAGGATTGTTAAGTCCATTTGGTCCTCTAGGCACATAGGAT
GGTTGTCCCTATATGCTTCGAACTCAGCTGGAGGTATCATTGTTATGTGGAAGGAAAATATGGTTGATGTCGTCGACTCTGTTCTGGGAGCATACTCTGTCTCCCTAAAT
TGTGTCTTCCATGGTCGGTTAGTTGGGTGGGTCTCGGGGTTTATGGCCCCTGTTGTTATAAGGAAAGAAAGAGGTTCCTCAGAGAGTTATATGACCTTTCAGGGCTCTGC
CAGGGAATCTGGTGCATAG
Protein sequenceShow/hide protein sequence
MINRFCVKQKDAKEDSTLEIKTSLTAHLVSTWYQDSCTSGIYGSMALDKYQESRLAMVDRRIVKSIWSSRHIGWLSLYASNSAGGIIVMWKENMVDVVDSVLGAYSVSLN
CVFHGRLVGWVSGFMAPVVIRKERGSSESYMTFQGSARESGA