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Lag0039434 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039434
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr2:43641192..43641797
RNA-Seq ExpressionLag0039434
SyntenyLag0039434
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7566808.1 Integrase catalytic core [Arabidopsis suecica]1.7e-1234.69Show/hide
Query:  ENLKSDKGTADKDQ---GKRVEEA----VSVAAPIAPSAVDSQAQLTKALASVVDLRLRKLEIPVFSGSNPYDWLHQVERYFMVNRLTDSEKVEATVLCL
        E LKS   T D+ +   GK+V++      S +  I P    S+ + +       +  L+K+++PVF+GS PY W+ QVER+F V R +D+ +++   L L
Subjt:  ENLKSDKGTADKDQ---GKRVEEA----VSVAAPIAPSAVDSQAQLTKALASVVDLRLRKLEIPVFSGSNPYDWLHQVERYFMVNRLTDSEKVEATVLCL

Query:  DGVVLKWHHYKEKRRSIATWEEEELPPQDTLLDFGNQYHREDGNRAF
        +G VLKW +++  RR   +WEE +      L+ FG     E GNR F
Subjt:  DGVVLKWHHYKEKRRSIATWEEEELPPQDTLLDFGNQYHREDGNRAF

XP_020865814.1 uncharacterized protein LOC110224244 [Arabidopsis lyrata subsp. lyrata]2.2e-1234.69Show/hide
Query:  ENLKSDKGTADKDQ---GKRVEEA----VSVAAPIAPSAVDSQAQLTKALASVVDLRLRKLEIPVFSGSNPYDWLHQVERYFMVNRLTDSEKVEATVLCL
        E LKS   T D+ +   GK V++      S +  I P    S+ + +       +  L+K+++PVF+GS PY W+ QVER+F V R +D+ +++   L L
Subjt:  ENLKSDKGTADKDQ---GKRVEEA----VSVAAPIAPSAVDSQAQLTKALASVVDLRLRKLEIPVFSGSNPYDWLHQVERYFMVNRLTDSEKVEATVLCL

Query:  DGVVLKWHHYKEKRRSIATWEEEELPPQDTLLDFGNQYHREDGNRAF
        +G VLKW +++  RR   +WEE +      L+ FG     E GNR F
Subjt:  DGVVLKWHHYKEKRRSIATWEEEELPPQDTLLDFGNQYHREDGNRAF

XP_022897442.1 uncharacterized protein LOC111411108 [Olea europaea var. sylvestris]4.4e-1350Show/hide
Query:  RLRKLEIPVFSGSNPYDWLHQVERYFMVNRLTDSEKVEATVLCLDGVVLKWHHYKEKRRSIATWEE
        R+R+LE+PVF G++P  W+ +VERYF VNRL++ EK+EA  +C DG  L W  ++E+RR +  WE+
Subjt:  RLRKLEIPVFSGSNPYDWLHQVERYFMVNRLTDSEKVEATVLCLDGVVLKWHHYKEKRRSIATWEE

XP_028553339.1 uncharacterized protein LOC114580325 [Dendrobium catenatum]1.7e-1247.06Show/hide
Query:  DLRLRKLEIPVFSGSNPYDWLHQVERYFMVNRLTDSEKVEATVLCLDGVVLKWHHYKEKRRSIATWEE
        D ++RKL++P+F G + + W+++VERYF+VNRLTD EK+ A  LCL+G  L W+ ++++R  I  W E
Subjt:  DLRLRKLEIPVFSGSNPYDWLHQVERYFMVNRLTDSEKVEATVLCLDGVVLKWHHYKEKRRSIATWEE

XP_038904464.1 uncharacterized protein LOC120090832 [Benincasa hispida]4.7e-1553.62Show/hide
Query:  DLRLRKLEIPVFS---GSNPYDWLHQVERYFMVNRLTDSEKVEATVLCLDGVVLKWHHYKEKRRSIATW
        D+RLRKLEIP+F    G +P  W H+VERYF+VNRL++ +K+EA +LCL+G  L+WH ++E+R  + TW
Subjt:  DLRLRKLEIPVFS---GSNPYDWLHQVERYFMVNRLTDSEKVEATVLCLDGVVLKWHHYKEKRRSIATW

TrEMBL top hitse value%identityAlignment
A0A2I0VV18 1-phosphatidylinositol-3-phosphate 5-kinase6.8e-1245.59Show/hide
Query:  DLRLRKLEIPVFSGSNPYDWLHQVERYFMVNRLTDSEKVEATVLCLDGVVLKWHHYKEKRRSIATWEE
        D ++RKL++P+F G + + W+++VERYF VN LTD EK+ A  LCL+G  L W+ ++++R  I +W E
Subjt:  DLRLRKLEIPVFSGSNPYDWLHQVERYFMVNRLTDSEKVEATVLCLDGVVLKWHHYKEKRRSIATWEE

A0A5D3BD43 Aminoacyl-tRNA ligase4.0e-1251.43Show/hide
Query:  LRLRKLEIPVFSG---SNPYDWLHQVERYFMVNRLTDSEKVEATVLCLDGVVLKWHHYKEKRRSIATWEE
        +RLRKLE+P+F G    +   WLH+VERYFMVNRLT+ +K++  VLC +G  L W  +K  R SI +W E
Subjt:  LRLRKLEIPVFSG---SNPYDWLHQVERYFMVNRLTDSEKVEATVLCLDGVVLKWHHYKEKRRSIATWEE

A0A7J6GB68 Retrotrans_gag domain-containing protein5.2e-1247.06Show/hide
Query:  DLRLRKLEIPVFSGSNPYDWLHQVERYFMVNRLTDSEKVEATVLCLDGVVLKWHHYKEKRRSIATWEE
        + R R +E+P+F+GS+P DW ++ ERYF + RLT  E++EA VLCL+G  L+W  ++ +RR I +W E
Subjt:  DLRLRKLEIPVFSGSNPYDWLHQVERYFMVNRLTDSEKVEATVLCLDGVVLKWHHYKEKRRSIATWEE

A0A7J6HRA8 Retrotrans_gag domain-containing protein1.1e-1248.53Show/hide
Query:  DLRLRKLEIPVFSGSNPYDWLHQVERYFMVNRLTDSEKVEATVLCLDGVVLKWHHYKEKRRSIATWEE
        + R R +E+P+F+GS+P DW ++VERYF + RLT  E++EA VLCL+G  L+W  ++ +RR I +W E
Subjt:  DLRLRKLEIPVFSGSNPYDWLHQVERYFMVNRLTDSEKVEATVLCLDGVVLKWHHYKEKRRSIATWEE

V4UDR6 Uncharacterized protein1.8e-1248.53Show/hide
Query:  DLRLRKLEIPVFSGSNPYDWLHQVERYFMVNRLTDSEKVEATVLCLDGVVLKWHHYKEKRRSIATWEE
        D R RKLE P+F GSNP  W+ + ERYF VNRL++ EK+EA ++  +G  L W+ ++ ++RS+  WEE
Subjt:  DLRLRKLEIPVFSGSNPYDWLHQVERYFMVNRLTDSEKVEATVLCLDGVVLKWHHYKEKRRSIATWEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G67020.1 unknown protein3.7e-1034.26Show/hide
Query:  QGKRVEEAVSVAAPIAPSAVDSQAQLTKALASV-VDLR---LRKLEIPVFSGSNPYDWLHQVERYFMVNRLTDSEKVEATVLCLDGVVLKWHHYKEKRRS
        +GKRVE+          S   S  Q     + + +D R   +R++E+PVF GS  Y+W  +VER+F V R  DS+K++   L L+GV LKW   +     
Subjt:  QGKRVEEAVSVAAPIAPSAVDSQAQLTKALASV-VDLR---LRKLEIPVFSGSNPYDWLHQVERYFMVNRLTDSEKVEATVLCLDGVVLKWHHYKEKRRS

Query:  IATWEEEE
           W   E
Subjt:  IATWEEEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCGCAAATGGAGAAAGGTTTCATGGCAGTGTTGACTCAACTTGAGAATTTGAAGTCTGACAAAGGTACCGCTGATAAAGATCAAGGCAAACGCGTGGAGGAGGC
AGTAAGTGTTGCAGCTCCAATTGCTCCGTCGGCTGTAGATTCGCAAGCTCAATTGACGAAGGCTTTGGCTTCGGTGGTTGATTTGCGTCTTCGCAAGTTAGAAATTCCGG
TATTTTCTGGTTCGAACCCGTATGATTGGCTTCATCAGGTGGAGCGGTATTTCATGGTTAATCGATTGACGGATTCTGAGAAGGTCGAAGCAACAGTGCTTTGTTTGGAT
GGTGTTGTGCTAAAGTGGCACCATTATAAAGAAAAGCGACGGTCGATTGCAACTTGGGAGGAAGAAGAGCTACCACCCCAAGACACCTTGCTTGATTTCGGAAATCAATA
CCATAGAGAAGATGGAAATAGAGCTTTTGACTCACTGCGAGGAAAAACACGACTGATGTTTAAGATACTGAATATATTGATCCAACAGGAAGCAGCAAAGGTGCAAGAGA
AGAATAGACGCAGCTGCCTTTACTCAATGATTTTGCATATCACTGCAACTCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCGCAAATGGAGAAAGGTTTCATGGCAGTGTTGACTCAACTTGAGAATTTGAAGTCTGACAAAGGTACCGCTGATAAAGATCAAGGCAAACGCGTGGAGGAGGC
AGTAAGTGTTGCAGCTCCAATTGCTCCGTCGGCTGTAGATTCGCAAGCTCAATTGACGAAGGCTTTGGCTTCGGTGGTTGATTTGCGTCTTCGCAAGTTAGAAATTCCGG
TATTTTCTGGTTCGAACCCGTATGATTGGCTTCATCAGGTGGAGCGGTATTTCATGGTTAATCGATTGACGGATTCTGAGAAGGTCGAAGCAACAGTGCTTTGTTTGGAT
GGTGTTGTGCTAAAGTGGCACCATTATAAAGAAAAGCGACGGTCGATTGCAACTTGGGAGGAAGAAGAGCTACCACCCCAAGACACCTTGCTTGATTTCGGAAATCAATA
CCATAGAGAAGATGGAAATAGAGCTTTTGACTCACTGCGAGGAAAAACACGACTGATGTTTAAGATACTGAATATATTGATCCAACAGGAAGCAGCAAAGGTGCAAGAGA
AGAATAGACGCAGCTGCCTTTACTCAATGATTTTGCATATCACTGCAACTCCATGA
Protein sequenceShow/hide protein sequence
MAAQMEKGFMAVLTQLENLKSDKGTADKDQGKRVEEAVSVAAPIAPSAVDSQAQLTKALASVVDLRLRKLEIPVFSGSNPYDWLHQVERYFMVNRLTDSEKVEATVLCLD
GVVLKWHHYKEKRRSIATWEEEELPPQDTLLDFGNQYHREDGNRAFDSLRGKTRLMFKILNILIQQEAAKVQEKNRRSCLYSMILHITATP