CuGenDBv2

Gene ID	Lag0039435
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Reverse transcriptase
Genome location	chr2:43644299..43645397
RNA-Seq Expression	Lag0039435
Synteny	Lag0039435
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039330.1 TMV resistance protein N-like [Cucumis melo var. makuwa]

1.9e-11

38.94

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Query:  RKLDIVLPRRE----IPELFTCGREETEFKIDSDDVEPEHLHFADENKLRRLNAEQFVWLSYIPRTAFTVPWRHCSHFE-ALVTTNSSLLKVAKCGLRLV
        RKL+ ++P RE    + +L        +FK+DS  + PEH HF  + KL    A QF+WLSYIP   F + W +C+ FE AL T+   L  V  CGL L+
Subjt:  RKLDIVLPRRE----IPELFTCGREETEFKIDSDDVEPEHLHFADENKLRRLNAEQFVWLSYIPRTAFTVPWRHCSHFE-ALVTTNSSLLKVAKCGLRLV

Query:  NKQDMKEIHEIYM
        +K +   I  + M
Subjt:  NKQDMKEIHEIYM

KAA0058889.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]

1.6e-10

46.25

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Query:  QQDWSDSSSEDDKEPMNLPMERRRD-QRIPYHQQENDFKMKIDIPTYNGKMEIEAFLEWVKHVEIFFTYMNTPDAKKVKL
        +QD SDSS ED+   +N+  E +R    +PY+Q++ + +MK+D+PT+NG+M++E FL+W+K+VE FF Y N  + KKV+L
Subjt:  QQDWSDSSSEDDKEPMNLPMERRRD-QRIPYHQQENDFKMKIDIPTYNGKMEIEAFLEWVKHVEIFFTYMNTPDAKKVKL

XP_008459543.1 PREDICTED: TMV resistance protein N-like [Cucumis melo]

1.9e-11

38.94

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Query:  RKLDIVLPRRE----IPELFTCGREETEFKIDSDDVEPEHLHFADENKLRRLNAEQFVWLSYIPRTAFTVPWRHCSHFE-ALVTTNSSLLKVAKCGLRLV
        RKL+ ++P RE    + +L        +FK+DS  + PEH HF  + KL    A QF+WLSYIP   F + W +C+ FE AL T+   L  V  CGL L+
Subjt:  RKLDIVLPRRE----IPELFTCGREETEFKIDSDDVEPEHLHFADENKLRRLNAEQFVWLSYIPRTAFTVPWRHCSHFE-ALVTTNSSLLKVAKCGLRLV

Query:  NKQDMKEIHEIYM
        +K +   I  + M
Subjt:  NKQDMKEIHEIYM

XP_011656060.2 TMV resistance protein N isoform X1 [Cucumis sativus]

1.5e-11

38.94

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Query:  RKLDIVLPRRE----IPELFTCGREETEFKIDSDDVEPEHLHFADENKLRRLNAEQFVWLSYIPRTAFTVPWRHCSHFE-ALVTTNSSLLKVAKCGLRLV
        RKL+ ++P RE    + +L        +FK+DS  + PEH HF  + KL    A QF+WLSYIP   F + W +C+ FE AL T+   L  V  CGL L+
Subjt:  RKLDIVLPRRE----IPELFTCGREETEFKIDSDDVEPEHLHFADENKLRRLNAEQFVWLSYIPRTAFTVPWRHCSHFE-ALVTTNSSLLKVAKCGLRLV

Query:  NKQDMKEIHEIYM
        +K +   I ++ M
Subjt:  NKQDMKEIHEIYM

XP_031745730.1 uncharacterized protein LOC116406187 [Cucumis sativus]

2.1e-10

46.05

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Query:  SDSSSEDDKEPMNLPME-RRRDQRIPYHQQENDFKMKIDIPTYNGKMEIEAFLEWVKHVEIFFTYMNTPDAKKVKL
        SDS S D+   +N+  E ++R    PY Q++ + +MK+D+PT+NG++++E FL+W+K+VE FF Y NTP  KKV+L
Subjt:  SDSSSEDDKEPMNLPME-RRRDQRIPYHQQENDFKMKIDIPTYNGKMEIEAFLEWVKHVEIFFTYMNTPDAKKVKL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KW19 Uncharacterized protein

7.1e-12

38.94

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Query:  RKLDIVLPRRE----IPELFTCGREETEFKIDSDDVEPEHLHFADENKLRRLNAEQFVWLSYIPRTAFTVPWRHCSHFE-ALVTTNSSLLKVAKCGLRLV
        RKL+ ++P RE    + +L        +FK+DS  + PEH HF  + KL    A QF+WLSYIP   F + W +C+ FE AL T+   L  V  CGL L+
Subjt:  RKLDIVLPRRE----IPELFTCGREETEFKIDSDDVEPEHLHFADENKLRRLNAEQFVWLSYIPRTAFTVPWRHCSHFE-ALVTTNSSLLKVAKCGLRLV

Query:  NKQDMKEIHEIYM
        +K +   I ++ M
Subjt:  NKQDMKEIHEIYM

A0A1S4E362 TMV resistance protein N-like

9.3e-12

38.94

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Query:  RKLDIVLPRRE----IPELFTCGREETEFKIDSDDVEPEHLHFADENKLRRLNAEQFVWLSYIPRTAFTVPWRHCSHFE-ALVTTNSSLLKVAKCGLRLV
        RKL+ ++P RE    + +L        +FK+DS  + PEH HF  + KL    A QF+WLSYIP   F + W +C+ FE AL T+   L  V  CGL L+
Subjt:  RKLDIVLPRRE----IPELFTCGREETEFKIDSDDVEPEHLHFADENKLRRLNAEQFVWLSYIPRTAFTVPWRHCSHFE-ALVTTNSSLLKVAKCGLRLV

Query:  NKQDMKEIHEIYM
        +K +   I  + M
Subjt:  NKQDMKEIHEIYM

A0A5A7T7V5 TMV resistance protein N-like

9.3e-12

38.94

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Query:  RKLDIVLPRRE----IPELFTCGREETEFKIDSDDVEPEHLHFADENKLRRLNAEQFVWLSYIPRTAFTVPWRHCSHFE-ALVTTNSSLLKVAKCGLRLV
        RKL+ ++P RE    + +L        +FK+DS  + PEH HF  + KL    A QF+WLSYIP   F + W +C+ FE AL T+   L  V  CGL L+
Subjt:  RKLDIVLPRRE----IPELFTCGREETEFKIDSDDVEPEHLHFADENKLRRLNAEQFVWLSYIPRTAFTVPWRHCSHFE-ALVTTNSSLLKVAKCGLRLV

Query:  NKQDMKEIHEIYM
        +K +   I  + M
Subjt:  NKQDMKEIHEIYM

A0A5D3BB35 CCHC-type domain-containing protein

8.7e-10

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Query:  QQDWSDSSSEDDKEPMNLPMERRRDQRI-PYHQQENDFKMKIDIPTYNGKMEIEAFLEWVKHVEIFFTYMNTPDAKKVKL
        +QD SDSS ED+   +N+  E +R  R+ PY Q++ +  MK+D+PT++G+M++E FL+W+K++E  F Y NTP+ KK++L
Subjt:  QQDWSDSSSEDDKEPMNLPMERRRDQRI-PYHQQENDFKMKIDIPTYNGKMEIEAFLEWVKHVEIFFTYMNTPDAKKVKL

A0A5D3DJC1 Transposon Ty3-G Gag-Pol polyprotein

7.9e-11

46.25

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Query:  QQDWSDSSSEDDKEPMNLPMERRRD-QRIPYHQQENDFKMKIDIPTYNGKMEIEAFLEWVKHVEIFFTYMNTPDAKKVKL
        +QD SDSS ED+   +N+  E +R    +PY+Q++ + +MK+D+PT+NG+M++E FL+W+K+VE FF Y N  + KKV+L
Subjt:  QQDWSDSSSEDDKEPMNLPMERRRD-QRIPYHQQENDFKMKIDIPTYNGKMEIEAFLEWVKHVEIFFTYMNTPDAKKVKL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCTCCAAAGAGATTTCAAGAATTTAACCCATTATATAGACATCAACAAGATTGGTCAGACTCATCAAGCGAGGATGATAAAGAACCAATGAATCTGCCAATGGAACG
AAGAAGAGACCAAAGAATTCCCTACCACCAACAAGAGAATGATTTTAAGATGAAAATCGATATCCCAACTTATAATGGGAAAATGGAAATTGAAGCATTCTTGGAATGGG
TGAAACACGTGGAGATTTTTTTTACCTATATGAATACTCCGGACGCCAAGAAAGTTAAGTTGGAATTGTTTGACAGAAAGCTCGATATTGTTCTTCCTCGGCGTGAGATC
CCAGAACTGTTCACTTGTGGGAGAGAAGAAACAGAGTTTAAAATCGATTCCGATGATGTCGAACCCGAACACTTGCACTTTGCTGATGAAAATAAGCTACGACGACTAAA
TGCAGAACAGTTTGTATGGTTATCCTACATACCAAGAACTGCATTTACAGTTCCCTGGCGCCATTGCAGTCACTTTGAAGCTTTGGTTACTACTAACAGTTCGTTATTAA
AGGTGGCAAAATGTGGACTTCGTCTAGTGAACAAACAGGACATGAAAGAGATCCATGAGATATATATGGGGGTTCGCATTTAA

mRNA sequence

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Protein sequence

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MAPKRFQEFNPLYRHQQDWSDSSSEDDKEPMNLPMERRRDQRIPYHQQENDFKMKIDIPTYNGKMEIEAFLEWVKHVEIFFTYMNTPDAKKVKLELFDRKLDIVLPRREI
PELFTCGREETEFKIDSDDVEPEHLHFADENKLRRLNAEQFVWLSYIPRTAFTVPWRHCSHFEALVTTNSSLLKVAKCGLRLVNKQDMKEIHEIYMGVRI

Lag0039435 (gene) of Sponge gourd (AG-4) v1 genome