; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0039441 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039441
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr2:43777169..43781669
RNA-Seq ExpressionLag0039441
SyntenyLag0039441
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051133.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.1e-3573.27Show/hide
Query:  MWIQQLLSELQCSSKHSPVLWCDNLSAGALAANPIFHARTKHIEIDVHFVRDQVLKGALEVRYVPSADQVADCLTKSLTISQFTYLRSKLGVVELPTRLR
        +W++QLL EL  S    PVLWCDN+S GALA NP+FHARTKHIEIDVHF+RDQVL+G LEVRYVPS +Q+ADCLTKSLT SQF  LRSKLGV+ +P RLR
Subjt:  MWIQQLLSELQCSSKHSPVLWCDNLSAGALAANPIFHARTKHIEIDVHFVRDQVLKGALEVRYVPSADQVADCLTKSLTISQFTYLRSKLGVVELPTRLR

Query:  G
        G
Subjt:  G

TYJ96769.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.1e-3573.27Show/hide
Query:  MWIQQLLSELQCSSKHSPVLWCDNLSAGALAANPIFHARTKHIEIDVHFVRDQVLKGALEVRYVPSADQVADCLTKSLTISQFTYLRSKLGVVELPTRLR
        +W++QLL EL  S    PVLWCDN+S GALA NP+FHARTKHIEIDVHF+RDQVL+G LEVRYVPS +Q+ADCLTKSLT SQF  LRSKLGV+ +P RLR
Subjt:  MWIQQLLSELQCSSKHSPVLWCDNLSAGALAANPIFHARTKHIEIDVHFVRDQVLKGALEVRYVPSADQVADCLTKSLTISQFTYLRSKLGVVELPTRLR

Query:  G
        G
Subjt:  G

XP_022146774.1 uncharacterized protein LOC111015901 [Momordica charantia]3.6e-3557.45Show/hide
Query:  GPSGGESGRKRKAAIRETWQEHERQGMYSLLLNENSPKLEFTEKEAVGVGHPHNDALVVTLTIANAKVHRILIDGGSSADVLSATAFDAMKLGSDRLRPS
        GP   ESGRKRKA +RE      +  +Y   + + S K+EF+E EA  V HPHNDALV+TL IANAKVHRIL+DGGSS D+ S TA+ AM LG + L+ S
Subjt:  GPSGGESGRKRKAAIRETWQEHERQGMYSLLLNENSPKLEFTEKEAVGVGHPHNDALVVTLTIANAKVHRILIDGGSSADVLSATAFDAMKLGSDRLRPS

Query:  LTPLVGFGGEKITPRGSVELPVTFGEGLQTVTRMINFLVVD
        LTPL+GFGGE+I P+G +ELP+TF    +++TRM++FLVVD
Subjt:  LTPLVGFGGEKITPRGSVELPVTFGEGLQTVTRMINFLVVD

XP_022154602.1 uncharacterized protein LOC111021822 [Momordica charantia]8.1e-3567.24Show/hide
Query:  MWIQQLLSELQCSSKHSPVLWCDNLSAGALAANPIFHARTKHIEIDVHFVRDQVLKGALEVRYVPSADQVADCLTKSLTISQFTYLRSKLGVVELPTRLR
        +W++QLL EL  +    P++WCDN+SAGALA NP+FHARTKHIEIDVHFVRD VL+GALEVRYVPSADQ+ADCLTK L  SQF  LRSKLGV++LP RLR
Subjt:  MWIQQLLSELQCSSKHSPVLWCDNLSAGALAANPIFHARTKHIEIDVHFVRDQVLKGALEVRYVPSADQVADCLTKSLTISQFTYLRSKLGVVELPTRLR

Query:  GILGKQVSHATSVKMH
        G +   V+ A  +K H
Subjt:  GILGKQVSHATSVKMH

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]2.3e-4237.08Show/hide
Query:  VFWCLFVKQGPRESLKDYINRFSNEVLQVVGYDDGVALTAVISGLQDERLLNSIGESQPRTKKERVGGCQYQVDTGR--QRKEAPDRRKRPEPTRALLGQ
        V + L +KQ   ESL+DY+ RF+ E LQV G  D V+L A +SG++DE L  S G+  P T  E +   Q  +  G     K  PD  KR +P R   G 
Subjt:  VFWCLFVKQGPRESLKDYINRFSNEVLQVVGYDDGVALTAVISGLQDERLLNSIGESQPRTKKERVGGCQYQVDTGR--QRKEAPDRRKRPEPTRALLGQ

Query:  WPRPTRSQGVARS------------CGAKGQIRQVY--------------ATNNFARTGLG------RNTGH---ESVETPREIEIRSRQEEQKQILHVP
         P+ +R +   RS                  I QV                  + A+   G      R+ GH   +  +   E+E   R+   K+ +  P
Subjt:  WPRPTRSQGVARS------------CGAKGQIRQVY--------------ATNNFARTGLG------RNTGH---ESVETPREIEIRSRQEEQKQILHVP

Query:  RRPRSYDPRVHPTEQGKGGNNPPLEIQTILGGPSGGESGRKRKAAIRETWQEHERQGMYSLLLNENSPKLEFTEKEAVGVGHPHNDALVVTLTIANAKVH
        +           T+ G+   +P  EI+TI+GGP   ESGRKRKA +RE     E+  +Y          +EF+E EA  + HPHNDALV+ L IAN KVH
Subjt:  RRPRSYDPRVHPTEQGKGGNNPPLEIQTILGGPSGGESGRKRKAAIRETWQEHERQGMYSLLLNENSPKLEFTEKEAVGVGHPHNDALVVTLTIANAKVH

Query:  RILIDGGSSADVLSATAFDAMKLGSDRLRPSLTPLVGFGGEKITPRGSVELPVTFG
        R+L+DGGSSAD++S TA+ AM L    L+ S  PLVGFG E++ P G +ELPVTFG
Subjt:  RILIDGGSSADVLSATAFDAMKLGSDRLRPSLTPLVGFGGEKITPRGSVELPVTFG

TrEMBL top hitse value%identityAlignment
A0A5A7U5H7 Putative mitochondrial protein3.9e-3573.27Show/hide
Query:  MWIQQLLSELQCSSKHSPVLWCDNLSAGALAANPIFHARTKHIEIDVHFVRDQVLKGALEVRYVPSADQVADCLTKSLTISQFTYLRSKLGVVELPTRLR
        +W++QLL EL  S    PVLWCDN+S GALA NP+FHARTKHIEIDVHF+RDQVL+G LEVRYVPS +Q+ADCLTKSLT SQF  LRSKLGV+ +P RLR
Subjt:  MWIQQLLSELQCSSKHSPVLWCDNLSAGALAANPIFHARTKHIEIDVHFVRDQVLKGALEVRYVPSADQVADCLTKSLTISQFTYLRSKLGVVELPTRLR

Query:  G
        G
Subjt:  G

A0A5D3BCJ6 Putative mitochondrial protein3.9e-3573.27Show/hide
Query:  MWIQQLLSELQCSSKHSPVLWCDNLSAGALAANPIFHARTKHIEIDVHFVRDQVLKGALEVRYVPSADQVADCLTKSLTISQFTYLRSKLGVVELPTRLR
        +W++QLL EL  S    PVLWCDN+S GALA NP+FHARTKHIEIDVHF+RDQVL+G LEVRYVPS +Q+ADCLTKSLT SQF  LRSKLGV+ +P RLR
Subjt:  MWIQQLLSELQCSSKHSPVLWCDNLSAGALAANPIFHARTKHIEIDVHFVRDQVLKGALEVRYVPSADQVADCLTKSLTISQFTYLRSKLGVVELPTRLR

Query:  G
        G
Subjt:  G

A0A6J1CZ14 uncharacterized protein LOC1110159011.7e-3557.45Show/hide
Query:  GPSGGESGRKRKAAIRETWQEHERQGMYSLLLNENSPKLEFTEKEAVGVGHPHNDALVVTLTIANAKVHRILIDGGSSADVLSATAFDAMKLGSDRLRPS
        GP   ESGRKRKA +RE      +  +Y   + + S K+EF+E EA  V HPHNDALV+TL IANAKVHRIL+DGGSS D+ S TA+ AM LG + L+ S
Subjt:  GPSGGESGRKRKAAIRETWQEHERQGMYSLLLNENSPKLEFTEKEAVGVGHPHNDALVVTLTIANAKVHRILIDGGSSADVLSATAFDAMKLGSDRLRPS

Query:  LTPLVGFGGEKITPRGSVELPVTFGEGLQTVTRMINFLVVD
        LTPL+GFGGE+I P+G +ELP+TF    +++TRM++FLVVD
Subjt:  LTPLVGFGGEKITPRGSVELPVTFGEGLQTVTRMINFLVVD

A0A6J1DM39 uncharacterized protein LOC1110218223.9e-3567.24Show/hide
Query:  MWIQQLLSELQCSSKHSPVLWCDNLSAGALAANPIFHARTKHIEIDVHFVRDQVLKGALEVRYVPSADQVADCLTKSLTISQFTYLRSKLGVVELPTRLR
        +W++QLL EL  +    P++WCDN+SAGALA NP+FHARTKHIEIDVHFVRD VL+GALEVRYVPSADQ+ADCLTK L  SQF  LRSKLGV++LP RLR
Subjt:  MWIQQLLSELQCSSKHSPVLWCDNLSAGALAANPIFHARTKHIEIDVHFVRDQVLKGALEVRYVPSADQVADCLTKSLTISQFTYLRSKLGVVELPTRLR

Query:  GILGKQVSHATSVKMH
        G +   V+ A  +K H
Subjt:  GILGKQVSHATSVKMH

A0A6J1DWY0 uncharacterized protein LOC1110252938.7e-4337.36Show/hide
Query:  VFWCLFVKQGPRESLKDYINRFSNEVLQVVGYDDGVALTAVISGLQDERLLNSIGESQPRTKKERVGGCQYQVDTGR--QRKEAPDRRKRPEPTRALLGQ
        V + L +KQ   ESL+DY+ RF+ E LQV G  D V+L A +SG++DE L  S G+  P T  E +   Q  +  G     K  PD  KR +P R   G 
Subjt:  VFWCLFVKQGPRESLKDYINRFSNEVLQVVGYDDGVALTAVISGLQDERLLNSIGESQPRTKKERVGGCQYQVDTGR--QRKEAPDRRKRPEPTRALLGQ

Query:  WPRPTRSQGVARS------------CGAKGQIRQVY--------------ATNNFARTGLG------RNTGH---ESVETPREIEIRSRQEEQKQILHVP
         P+ +R +   RS                  I QV                  + A+   G      R+ GH   +  +   E+E   R+   K+ +  P
Subjt:  WPRPTRSQGVARS------------CGAKGQIRQVY--------------ATNNFARTGLG------RNTGH---ESVETPREIEIRSRQEEQKQILHVP

Query:  RRPRSYDPRVHPTEQGKGGNNPPLEIQTILGGPSGGESGRKRKAAIRETWQEHERQGMYSLLLNENSPKLEFTEKEAVGVGHPHNDALVVTLTIANAKVH
        +           T+ G+   +P  EI+TI+GGP   ESGRKRKA +RE     E+  +Y          +EF+E EA  + HPHNDALV+ L IAN KVH
Subjt:  RRPRSYDPRVHPTEQGKGGNNPPLEIQTILGGPSGGESGRKRKAAIRETWQEHERQGMYSLLLNENSPKLEFTEKEAVGVGHPHNDALVVTLTIANAKVH

Query:  RILIDGGSSADVLSATAFDAMKLGSDRLRPSLTPLVGFGGEKITPRGSVELPVTFG
        R+L+DGGSSAD+LS TA+ AM L    L+ S  PLVGFG E++ P G +ELPVTFG
Subjt:  RILIDGGSSADVLSATAFDAMKLGSDRLRPSLTPLVGFGGEKITPRGSVELPVTFG

SwissProt top hitse value%identityAlignment
P04146 Copia protein1.7e-1135.11Show/hide
Query:  MWIQQLLSELQCSSKHSPVLWCDNLSAGALAANPIFHARTKHIEIDVHFVRDQVLKGALEVRYVPSADQVADCLTKSLTISQFTYLRSKLGVVE
        +W++ LL+ +    ++   ++ DN    ++A NP  H R KHI+I  HF R+QV    + + Y+P+ +Q+AD  TK L  ++F  LR KLG+++
Subjt:  MWIQQLLSELQCSSKHSPVLWCDNLSAGALAANPIFHARTKHIEIDVHFVRDQVLKGALEVRYVPSADQVADCLTKSLTISQFTYLRSKLGVVE

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.9e-0833.7Show/hide
Query:  MWIQQLLSELQCSSKHSPVLWCDNLSAGALAANPIFHARTKHIEIDVHFVRDQVLKGALEVRYVPSADQVADCLTKSLTISQFTYLRSKLGV
        +W+++ L EL    K   V++CD+ SA  L+ N ++HARTKHI++  H++R+ V   +L+V  + + +  AD LTK +  ++F   +  +G+
Subjt:  MWIQQLLSELQCSSKHSPVLWCDNLSAGALAANPIFHARTKHIEIDVHFVRDQVLKGALEVRYVPSADQVADCLTKSLTISQFTYLRSKLGV

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.2e-1950.53Show/hide
Query:  WIQQLLSELQCSSKHSPVLWCDNLSAGALAANPIFHARTKHIEIDVHFVRDQVLKGALEVRYVPSADQVADCLTKSLTISQFTYLRSKLGVVELP
        WI  LL+EL       PV++CDN+ A  L ANP+FH+R KHI ID HF+R+QV  GAL V +V + DQ+AD LTK L+ + F    SK+GV  +P
Subjt:  WIQQLLSELQCSSKHSPVLWCDNLSAGALAANPIFHARTKHIEIDVHFVRDQVLKGALEVRYVPSADQVADCLTKSLTISQFTYLRSKLGVVELP

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE29.0e-2148.04Show/hide
Query:  WIQQLLSELQCSSKHSPVLWCDNLSAGALAANPIFHARTKHIEIDVHFVRDQVLKGALEVRYVPSADQVADCLTKSLTISQFTYLRSKLGVVELPTRLRG
        WI  LL+EL     H PV++CDN+ A  L ANP+FH+R KHI +D HF+R+QV  GAL V +V + DQ+AD LTK L+   F     K+GV+++P    G
Subjt:  WIQQLLSELQCSSKHSPVLWCDNLSAGALAANPIFHARTKHIEIDVHFVRDQVLKGALEVRYVPSADQVADCLTKSLTISQFTYLRSKLGVVELPTRLRG

Query:  IL
        +L
Subjt:  IL

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 82.6e-0729.75Show/hide
Query:  MWIQQLLSELQCSSKHSPVLWCDNLSAGALAANPIFHARTKHIEIDVHFVRDQVLKGALEVRYVPSADQVADCLTKSLT---ISQFTYLRSKLGVVELPT
        MW+ Q   ELQ       +L+CDN +A  +A N +FH RTKHIE D H VR++ +  A  + Y   A    D  T+ L+        Y+ S  G+  L  
Subjt:  MWIQQLLSELQCSSKHSPVLWCDNLSAGALAANPIFHARTKHIEIDVHFVRDQVLKGALEVRYVPSADQVADCLTKSLT---ISQFTYLRSKLGVVELPT

Query:  RLRGILGKQVSHATSVKMHNQ----------QRNEHLSNHIIGNSRRLLLTNSVIENS
         +  I     S  TS K   Q           R  + SN     + + LL++    N+
Subjt:  RLRGILGKQVSHATSVKMHNQ----------QRNEHLSNHIIGNSRRLLLTNSVIENS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGATTCAGCAACTATTATCTGAACTTCAATGCTCTTCCAAACACTCTCCAGTTCTGTGGTGTGACAACCTTAGTGCTGGAGCATTGGCGGCCAACCCGATTTTCCA
TGCTAGGACCAAGCACATCGAGATTGATGTACATTTTGTTCGTGACCAAGTTCTTAAGGGAGCACTTGAAGTTCGTTATGTACCCTCAGCAGACCAGGTAGCTGACTGCT
TAACTAAGTCTCTTACCATATCTCAGTTTACATACTTGCGCTCCAAACTCGGGGTTGTTGAACTCCCCACTCGTTTGAGGGGGATATTAGGGAAACAAGTCAGCCATGCC
ACATCAGTCAAGATGCACAATCAGCAAAGGAATGAACACCTCAGCAACCACATAATTGGAAATTCCAGAAGACTCTTATTAACCAATTCTGTTATTGAGAATTCTGTCAT
TTTGTACAAAATCCTTTATTCTTGGGTTTCTGTCCTTCTCTCTGTAATAATTCGTTATTTTGTATTCTGGTGCCTTTTTGTAAAGCAGGGACCCCGGGAAAGCCTGAAAG
ATTATATTAACAGATTCAGTAACGAAGTTTTGCAGGTGGTAGGATACGATGACGGAGTTGCCTTGACCGCTGTGATTTCAGGCTTGCAGGATGAAAGGCTGCTCAACTCA
ATCGGCGAGAGCCAACCACGAACGAAGAAAGAGAGAGTTGGGGGATGTCAGTATCAAGTCGACACGGGAAGACAGAGGAAAGAGGCACCAGATCGAAGGAAGAGACCGGA
GCCGACTAGAGCACTCCTCGGCCAATGGCCGAGGCCGACCAGAAGCCAAGGAGTTGCAAGGTCGTGTGGAGCCAAAGGCCAGATTCGACAGGTATACGCCACTAACAACT
TCGCTCGAACAGGTCTTGGCCGCAATACAGGACACGAATCTGTTGAAACACCCAGAGAAATTGAGATCAGATCCCGACAGGAGGAACAGAAACAAATACTGCATGTTCCA
CGGAGACCACGGTCATACGACCCGAGAGTGCATCCAACAGAACAAGGCAAAGGAGGCAATAACCCACCGCTCGAGATACAAACGATTTTGGGAGGTCCATCCGGAGGAGA
GTCAGGTAGAAAGCGGAAAGCTGCAATCCGGGAGACATGGCAAGAACATGAAAGGCAAGGTATGTACTCGCTCCTACTTAATGAAAACTCACCAAAATTGGAGTTTACAG
AGAAGGAGGCCGTGGGAGTAGGCCATCCACACAACGACGCACTGGTGGTTACCTTAACAATTGCCAACGCAAAAGTTCACCGAATCCTCATTGATGGGGGAAGTTCTGCT
GATGTTCTCTCAGCCACTGCGTTCGACGCCATGAAGCTGGGGAGCGATCGCCTGAGACCGAGCCTCACGCCGCTAGTAGGTTTCGGCGGGGAAAAAATAACCCCGAGAGG
AAGTGTTGAACTGCCAGTGACGTTTGGAGAAGGGTTGCAGACAGTAACGAGGATGATCAACTTTCTGGTAGTAGACTGTGTCCTAGCATGTCTTTCAGTCCACTGGACCA
TGTTCGGTTTCCTTTTATGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGATTCAGCAACTATTATCTGAACTTCAATGCTCTTCCAAACACTCTCCAGTTCTGTGGTGTGACAACCTTAGTGCTGGAGCATTGGCGGCCAACCCGATTTTCCA
TGCTAGGACCAAGCACATCGAGATTGATGTACATTTTGTTCGTGACCAAGTTCTTAAGGGAGCACTTGAAGTTCGTTATGTACCCTCAGCAGACCAGGTAGCTGACTGCT
TAACTAAGTCTCTTACCATATCTCAGTTTACATACTTGCGCTCCAAACTCGGGGTTGTTGAACTCCCCACTCGTTTGAGGGGGATATTAGGGAAACAAGTCAGCCATGCC
ACATCAGTCAAGATGCACAATCAGCAAAGGAATGAACACCTCAGCAACCACATAATTGGAAATTCCAGAAGACTCTTATTAACCAATTCTGTTATTGAGAATTCTGTCAT
TTTGTACAAAATCCTTTATTCTTGGGTTTCTGTCCTTCTCTCTGTAATAATTCGTTATTTTGTATTCTGGTGCCTTTTTGTAAAGCAGGGACCCCGGGAAAGCCTGAAAG
ATTATATTAACAGATTCAGTAACGAAGTTTTGCAGGTGGTAGGATACGATGACGGAGTTGCCTTGACCGCTGTGATTTCAGGCTTGCAGGATGAAAGGCTGCTCAACTCA
ATCGGCGAGAGCCAACCACGAACGAAGAAAGAGAGAGTTGGGGGATGTCAGTATCAAGTCGACACGGGAAGACAGAGGAAAGAGGCACCAGATCGAAGGAAGAGACCGGA
GCCGACTAGAGCACTCCTCGGCCAATGGCCGAGGCCGACCAGAAGCCAAGGAGTTGCAAGGTCGTGTGGAGCCAAAGGCCAGATTCGACAGGTATACGCCACTAACAACT
TCGCTCGAACAGGTCTTGGCCGCAATACAGGACACGAATCTGTTGAAACACCCAGAGAAATTGAGATCAGATCCCGACAGGAGGAACAGAAACAAATACTGCATGTTCCA
CGGAGACCACGGTCATACGACCCGAGAGTGCATCCAACAGAACAAGGCAAAGGAGGCAATAACCCACCGCTCGAGATACAAACGATTTTGGGAGGTCCATCCGGAGGAGA
GTCAGGTAGAAAGCGGAAAGCTGCAATCCGGGAGACATGGCAAGAACATGAAAGGCAAGGTATGTACTCGCTCCTACTTAATGAAAACTCACCAAAATTGGAGTTTACAG
AGAAGGAGGCCGTGGGAGTAGGCCATCCACACAACGACGCACTGGTGGTTACCTTAACAATTGCCAACGCAAAAGTTCACCGAATCCTCATTGATGGGGGAAGTTCTGCT
GATGTTCTCTCAGCCACTGCGTTCGACGCCATGAAGCTGGGGAGCGATCGCCTGAGACCGAGCCTCACGCCGCTAGTAGGTTTCGGCGGGGAAAAAATAACCCCGAGAGG
AAGTGTTGAACTGCCAGTGACGTTTGGAGAAGGGTTGCAGACAGTAACGAGGATGATCAACTTTCTGGTAGTAGACTGTGTCCTAGCATGTCTTTCAGTCCACTGGACCA
TGTTCGGTTTCCTTTTATGTTGA
Protein sequenceShow/hide protein sequence
MWIQQLLSELQCSSKHSPVLWCDNLSAGALAANPIFHARTKHIEIDVHFVRDQVLKGALEVRYVPSADQVADCLTKSLTISQFTYLRSKLGVVELPTRLRGILGKQVSHA
TSVKMHNQQRNEHLSNHIIGNSRRLLLTNSVIENSVILYKILYSWVSVLLSVIIRYFVFWCLFVKQGPRESLKDYINRFSNEVLQVVGYDDGVALTAVISGLQDERLLNS
IGESQPRTKKERVGGCQYQVDTGRQRKEAPDRRKRPEPTRALLGQWPRPTRSQGVARSCGAKGQIRQVYATNNFARTGLGRNTGHESVETPREIEIRSRQEEQKQILHVP
RRPRSYDPRVHPTEQGKGGNNPPLEIQTILGGPSGGESGRKRKAAIRETWQEHERQGMYSLLLNENSPKLEFTEKEAVGVGHPHNDALVVTLTIANAKVHRILIDGGSSA
DVLSATAFDAMKLGSDRLRPSLTPLVGFGGEKITPRGSVELPVTFGEGLQTVTRMINFLVVDCVLACLSVHWTMFGFLLC