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Lag0039450 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039450
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr2:43950976..43951287
RNA-Seq ExpressionLag0039450
SyntenyLag0039450
Gene Ontology termsGO:0043167 - ion binding (molecular function)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051973.1 E3 ubiquitin-protein ligase SHPRH isoform X4 [Cucumis melo var. makuwa]4.4e-0959.02Show/hide
Query:  EYTEEFHRLGARTNLGENQQCLVARFKGGLRANIQEQNSLQPIAFLNEAITAAATAEEQIA
        EY EEFHRL  RTNL EN+   +ARF GGLR +I+E+  LQP  FL+EAI+ A T +E IA
Subjt:  EYTEEFHRLGARTNLGENQQCLVARFKGGLRANIQEQNSLQPIAFLNEAITAAATAEEQIA

XP_031741035.1 uncharacterized protein LOC116403692 [Cucumis sativus]6.7e-1050Show/hide
Query:  EYTEEFHRLGARTNLGENQQCLVARFKGGLRANIQEQNSLQPIAFLNEAITAAATAEEQIANRFKRQYTRRNTGEPSTYNSRNSAIDKNTSQTSSAAEKA
        EY EEFHRL ARTNL EN+Q  VARF GGLR +I+E+  LQP  FL+EAI+ A T EE IA R K    RR+  E       NS   K   Q S++ +  
Subjt:  EYTEEFHRLGARTNLGENQQCLVARFKGGLRANIQEQNSLQPIAFLNEAITAAATAEEQIANRFKRQYTRRNTGEPSTYNSRNSAIDKNTSQTSSAAEKA

Query:  SK
         K
Subjt:  SK

XP_031743026.1 uncharacterized protein LOC116404533 [Cucumis sativus]6.7e-1050Show/hide
Query:  EYTEEFHRLGARTNLGENQQCLVARFKGGLRANIQEQNSLQPIAFLNEAITAAATAEEQIANRFKRQYTRRNTGEPSTYNSRNSAIDKNTSQTSSAAEKA
        EY EEFHRL ARTNL EN+Q  VARF GGLR +I+E+  LQP  FL+EAI+ A T EE IA R K    RR+  E       NS   K   Q S++ +  
Subjt:  EYTEEFHRLGARTNLGENQQCLVARFKGGLRANIQEQNSLQPIAFLNEAITAAATAEEQIANRFKRQYTRRNTGEPSTYNSRNSAIDKNTSQTSSAAEKA

Query:  SK
         K
Subjt:  SK

XP_031745468.1 uncharacterized protein LOC116405837 [Cucumis sativus]6.7e-1050Show/hide
Query:  EYTEEFHRLGARTNLGENQQCLVARFKGGLRANIQEQNSLQPIAFLNEAITAAATAEEQIANRFKRQYTRRNTGEPSTYNSRNSAIDKNTSQTSSAAEKA
        EY EEFHRL ARTNL EN+Q  VARF GGLR +I+E+  LQP  FL+EAI+ A T EE IA R K    RR+  E       NS   K   Q S++ +  
Subjt:  EYTEEFHRLGARTNLGENQQCLVARFKGGLRANIQEQNSLQPIAFLNEAITAAATAEEQIANRFKRQYTRRNTGEPSTYNSRNSAIDKNTSQTSSAAEKA

Query:  SK
         K
Subjt:  SK

XP_031745523.1 uncharacterized protein LOC116405899 [Cucumis sativus]2.7e-1153.26Show/hide
Query:  EYTEEFHRLGARTNLGENQQCLVARFKGGLRANIQEQNSLQPIAFLNEAITAAATAEEQIANRFKRQYTRRNTGEPSTYNSRNSAIDKNTSQ
        EY EEFHRL ARTNL EN+Q  +ARF GGLR +I+E+  LQP+ FL+EAI+ A T EE IA + K    RR T EP T   + S   K   Q
Subjt:  EYTEEFHRLGARTNLGENQQCLVARFKGGLRANIQEQNSLQPIAFLNEAITAAATAEEQIANRFKRQYTRRNTGEPSTYNSRNSAIDKNTSQ

TrEMBL top hitse value%identityAlignment
A0A2I0VQ79 CCHC-type domain-containing protein8.0e-0946.51Show/hide
Query:  EYTEEFHRLGARTNLGENQQCLVARFKGGLRANIQEQNSLQPIAFLNEAITAAATAEEQIANRFKRQYTRRNTGEPSTYNSRNSAI
        EYTEEFHRL AR NL E+   LVAR+ GGL+ +IQ++  L  I  L++AI  A  AE Q++   +  +TRR T +P    SR S++
Subjt:  EYTEEFHRLGARTNLGENQQCLVARFKGGLRANIQEQNSLQPIAFLNEAITAAATAEEQIANRFKRQYTRRNTGEPSTYNSRNSAI

A0A5A7U7S6 E3 ubiquitin-protein ligase SHPRH isoform X42.1e-0959.02Show/hide
Query:  EYTEEFHRLGARTNLGENQQCLVARFKGGLRANIQEQNSLQPIAFLNEAITAAATAEEQIA
        EY EEFHRL  RTNL EN+   +ARF GGLR +I+E+  LQP  FL+EAI+ A T +E IA
Subjt:  EYTEEFHRLGARTNLGENQQCLVARFKGGLRANIQEQNSLQPIAFLNEAITAAATAEEQIA

A0A5D3C3X9 Reverse transcriptase2.3e-0847.73Show/hide
Query:  EYTEEFHRLGARTNLGENQQCLVARFKGGLRANIQEQNSLQPIAFLNEAITAAATAEEQIANRFKRQYTRRNTGEPSTYNSRNSAIDK
        +Y +EFH LGAR NL EN+Q  +ARF GGLR +I+E+  LQP  FL+EAI+ A T EE  A R K   T    G+     +++ A DK
Subjt:  EYTEEFHRLGARTNLGENQQCLVARFKGGLRANIQEQNSLQPIAFLNEAITAAATAEEQIANRFKRQYTRRNTGEPSTYNSRNSAIDK

A0A5D3D655 Retrotrans_gag domain-containing protein4.7e-0950Show/hide
Query:  EYTEEFHRLGARTNLGENQQCLVARFKGGLRANIQEQNSLQPIAFLNEAITAAATAEEQIANRFKRQYTRRNTGEPST
        EY EEFHRLGARTNL E++Q L+ARF GGLR +++E+  LQ   +L+E I    T EE + ++ K  +TR+   E ST
Subjt:  EYTEEFHRLGARTNLGENQQCLVARFKGGLRANIQEQNSLQPIAFLNEAITAAATAEEQIANRFKRQYTRRNTGEPST

A0A5D3DGR0 Reverse transcriptase6.2e-0946.15Show/hide
Query:  EYTEEFHRLGARTNLGENQQCLVARFKGGLRANIQEQNSLQPIAFLNEAITAAATAEEQIANRFKRQYTRRNTGEPST---YNSRNSAIDKNTSQTSSAA
        EY EEFHRLG RTNL E ++ L++ F GGLR +++E+  LQP   L+EAIT A T EE I NR K   TR+   EPS      + NS +   TS+     
Subjt:  EYTEEFHRLGARTNLGENQQCLVARFKGGLRANIQEQNSLQPIAFLNEAITAAATAEEQIANRFKRQYTRRNTGEPST---YNSRNSAIDKNTSQTSSAA

Query:  EKAS
        E++S
Subjt:  EKAS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATATACCGAGGAGTTCCATAGACTGGGGGCTCGTACAAATCTTGGAGAAAATCAGCAATGTCTGGTAGCAAGATTCAAGGGTGGACTTCGAGCGAATATTCAAGA
ACAAAATTCCTTACAACCTATAGCTTTCTTGAATGAAGCCATTACTGCGGCTGCTACAGCTGAAGAACAAATAGCCAATAGATTTAAGAGACAATACACAAGGAGGAATA
CAGGGGAACCAAGCACCTACAATTCAAGAAATTCTGCAATCGACAAGAATACATCCCAAACTTCATCCGCCGCAGAAAAGGCAAGCAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAATATACCGAGGAGTTCCATAGACTGGGGGCTCGTACAAATCTTGGAGAAAATCAGCAATGTCTGGTAGCAAGATTCAAGGGTGGACTTCGAGCGAATATTCAAGA
ACAAAATTCCTTACAACCTATAGCTTTCTTGAATGAAGCCATTACTGCGGCTGCTACAGCTGAAGAACAAATAGCCAATAGATTTAAGAGACAATACACAAGGAGGAATA
CAGGGGAACCAAGCACCTACAATTCAAGAAATTCTGCAATCGACAAGAATACATCCCAAACTTCATCCGCCGCAGAAAAGGCAAGCAAATAG
Protein sequenceShow/hide protein sequence
MEYTEEFHRLGARTNLGENQQCLVARFKGGLRANIQEQNSLQPIAFLNEAITAAATAEEQIANRFKRQYTRRNTGEPSTYNSRNSAIDKNTSQTSSAAEKASK