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Lag0039471 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039471
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr2:44495302..44495616
RNA-Seq ExpressionLag0039471
SyntenyLag0039471
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032020.1 gag/pol protein [Cucumis melo var. makuwa]2.5e-1242.24Show/hide
Query:  MVHSMLSYSQLSGSFWGHAVLTALHT-------------------AVGNPKGMISGYFFNSQENKEFVSTNAKFSQEVHIKNNKPQSKVVLSKLTNEATV
        MV SM+SY+ L  SFWG+AV TA++                      G PKG    YF++ ++NK FVSTNA F ++ HI+ +KP +K+VL++L+ E T 
Subjt:  MVHSMLSYSQLSGSFWGHAVLTALHT-------------------AVGNPKGMISGYFFNSQENKEFVSTNAKFSQEVHIKNNKPQSKVVLSKLTNEATV

Query:  TSIRVVDEADCSTRVV
         S RVV+E    TRVV
Subjt:  TSIRVVDEADCSTRVV

KAA0049866.1 gag/pol protein [Cucumis melo var. makuwa]7.8e-1449.56Show/hide
Query:  MVHSMLSYSQLSGSFWGHAVLTALHTA------------------VGNPKGMISGYFFNSQENKEFVSTNAKFSQEVHIKNNKPQSKVVLSKLTNEATVT
        MV SM+SY+QL  SFWG+AV TA H                    VG PK M  G FF+ QENK FVSTNA F +E H++++KP+SK+VL    NEAT  
Subjt:  MVHSMLSYSQLSGSFWGHAVLTALHTA------------------VGNPKGMISGYFFNSQENKEFVSTNAKFSQEVHIKNNKPQSKVVLSKLTNEATVT

Query:  SIRVVDEADCSTR
        S RVVDE   S+R
Subjt:  SIRVVDEADCSTR

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-1444.83Show/hide
Query:  MVHSMLSYSQLSGSFWGHAVLTALHTA-------------------VGNPKGMISGYFFNSQENKEFVSTNAKFSQEVHIKNNKPQSKVVLSKLTNEATV
        MV SM+SY+ L  SFWG+AV TA++                      G PKG   GYF++ ++NK FVSTNA F +E HI+ +KP+SK+VL++L+ E T 
Subjt:  MVHSMLSYSQLSGSFWGHAVLTALHTA-------------------VGNPKGMISGYFFNSQENKEFVSTNAKFSQEVHIKNNKPQSKVVLSKLTNEATV

Query:  TSIRVVDEADCSTRVV
         S RVV+E    TRVV
Subjt:  TSIRVVDEADCSTRVV

TYJ99632.1 gag/pol protein [Cucumis melo var. makuwa]8.6e-1348.62Show/hide
Query:  MVHSMLSYSQLSGSFWGHAVLTALHTAVGNPKGMIS-------------GYFFNSQENKEFVSTNAKFSQEVHIKNNKPQSKVVLSKLTNEATVTSIRVV
        MV SM+SY+QL  SFWG+ V TA+H     P   +S             G FF+ QEN+ FVSTNA FS+E H++++KPQSK+VL    NEAT  S RVV
Subjt:  MVHSMLSYSQLSGSFWGHAVLTALHTAVGNPKGMIS-------------GYFFNSQENKEFVSTNAKFSQEVHIKNNKPQSKVVLSKLTNEATVTSIRVV

Query:  DEADCSTRV
         E   S+RV
Subjt:  DEADCSTRV

TYK16841.1 gag/pol protein [Cucumis melo var. makuwa]1.5e-1242.24Show/hide
Query:  MVHSMLSYSQLSGSFWGHAVLTALHT-------------------AVGNPKGMISGYFFNSQENKEFVSTNAKFSQEVHIKNNKPQSKVVLSKLTNEATV
        MV SM+SY+ L  SFWG+AV TA++                      G PKG    YF++ ++NK FVSTNA F ++ HI+ +KP +K+VL++L+ E T 
Subjt:  MVHSMLSYSQLSGSFWGHAVLTALHT-------------------AVGNPKGMISGYFFNSQENKEFVSTNAKFSQEVHIKNNKPQSKVVLSKLTNEATV

Query:  TSIRVVDEADCSTRVV
         S RVV+E    TRVV
Subjt:  TSIRVVDEADCSTRVV

TrEMBL top hitse value%identityAlignment
A0A5A7SMN4 Gag/pol protein1.2e-1242.24Show/hide
Query:  MVHSMLSYSQLSGSFWGHAVLTALHT-------------------AVGNPKGMISGYFFNSQENKEFVSTNAKFSQEVHIKNNKPQSKVVLSKLTNEATV
        MV SM+SY+ L  SFWG+AV TA++                      G PKG    YF++ ++NK FVSTNA F ++ HI+ +KP +K+VL++L+ E T 
Subjt:  MVHSMLSYSQLSGSFWGHAVLTALHT-------------------AVGNPKGMISGYFFNSQENKEFVSTNAKFSQEVHIKNNKPQSKVVLSKLTNEATV

Query:  TSIRVVDEADCSTRVV
         S RVV+E    TRVV
Subjt:  TSIRVVDEADCSTRVV

A0A5A7V6N0 Gag/pol protein7.6e-1544.83Show/hide
Query:  MVHSMLSYSQLSGSFWGHAVLTALHTA-------------------VGNPKGMISGYFFNSQENKEFVSTNAKFSQEVHIKNNKPQSKVVLSKLTNEATV
        MV SM+SY+ L  SFWG+AV TA++                      G PKG   GYF++ ++NK FVSTNA F +E HI+ +KP+SK+VL++L+ E T 
Subjt:  MVHSMLSYSQLSGSFWGHAVLTALHTA-------------------VGNPKGMISGYFFNSQENKEFVSTNAKFSQEVHIKNNKPQSKVVLSKLTNEATV

Query:  TSIRVVDEADCSTRVV
         S RVV+E    TRVV
Subjt:  TSIRVVDEADCSTRVV

A0A5D3BIR3 Gag/pol protein4.2e-1348.62Show/hide
Query:  MVHSMLSYSQLSGSFWGHAVLTALHTAVGNPKGMIS-------------GYFFNSQENKEFVSTNAKFSQEVHIKNNKPQSKVVLSKLTNEATVTSIRVV
        MV SM+SY+QL  SFWG+ V TA+H     P   +S             G FF+ QEN+ FVSTNA FS+E H++++KPQSK+VL    NEAT  S RVV
Subjt:  MVHSMLSYSQLSGSFWGHAVLTALHTAVGNPKGMIS-------------GYFFNSQENKEFVSTNAKFSQEVHIKNNKPQSKVVLSKLTNEATVTSIRVV

Query:  DEADCSTRV
         E   S+RV
Subjt:  DEADCSTRV

A0A5D3CXY9 Gag/pol protein7.1e-1342.24Show/hide
Query:  MVHSMLSYSQLSGSFWGHAVLTALHT-------------------AVGNPKGMISGYFFNSQENKEFVSTNAKFSQEVHIKNNKPQSKVVLSKLTNEATV
        MV SM+SY+ L  SFWG+AV TA++                      G PKG    YF++ ++NK FVSTNA F ++ HI+ +KP +K+VL++L+ E T 
Subjt:  MVHSMLSYSQLSGSFWGHAVLTALHT-------------------AVGNPKGMISGYFFNSQENKEFVSTNAKFSQEVHIKNNKPQSKVVLSKLTNEATV

Query:  TSIRVVDEADCSTRVV
         S RVV+E    TRVV
Subjt:  TSIRVVDEADCSTRVV

A0A5D3DC34 Gag/pol protein3.8e-1449.56Show/hide
Query:  MVHSMLSYSQLSGSFWGHAVLTALHTA------------------VGNPKGMISGYFFNSQENKEFVSTNAKFSQEVHIKNNKPQSKVVLSKLTNEATVT
        MV SM+SY+QL  SFWG+AV TA H                    VG PK M  G FF+ QENK FVSTNA F +E H++++KP+SK+VL    NEAT  
Subjt:  MVHSMLSYSQLSGSFWGHAVLTALHTA------------------VGNPKGMISGYFFNSQENKEFVSTNAKFSQEVHIKNNKPQSKVVLSKLTNEATVT

Query:  SIRVVDEADCSTR
        S RVVDE   S+R
Subjt:  SIRVVDEADCSTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCATTCCATGTTGAGCTATTCTCAATTGTCTGGCTCGTTTTGGGGTCATGCAGTGTTGACTGCATTGCATACTGCAGTAGGTAACCCCAAAGGAATGATAAGTGG
ATACTTCTTCAATTCACAAGAGAATAAAGAATTTGTATCGACAAATGCTAAATTCTCACAAGAAGTCCACATAAAAAATAATAAACCACAGAGTAAAGTCGTTTTAAGTA
AGTTAACTAATGAAGCTACAGTAACATCCATAAGAGTTGTTGATGAGGCTGACTGTTCAACAAGAGTTGTTGATGAGGCTGCAAGAGTTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCATTCCATGTTGAGCTATTCTCAATTGTCTGGCTCGTTTTGGGGTCATGCAGTGTTGACTGCATTGCATACTGCAGTAGGTAACCCCAAAGGAATGATAAGTGG
ATACTTCTTCAATTCACAAGAGAATAAAGAATTTGTATCGACAAATGCTAAATTCTCACAAGAAGTCCACATAAAAAATAATAAACCACAGAGTAAAGTCGTTTTAAGTA
AGTTAACTAATGAAGCTACAGTAACATCCATAAGAGTTGTTGATGAGGCTGACTGTTCAACAAGAGTTGTTGATGAGGCTGCAAGAGTTGTTTGA
Protein sequenceShow/hide protein sequence
MVHSMLSYSQLSGSFWGHAVLTALHTAVGNPKGMISGYFFNSQENKEFVSTNAKFSQEVHIKNNKPQSKVVLSKLTNEATVTSIRVVDEADCSTRVVDEAARVV