; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0039479 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039479
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr2:44643956..44647227
RNA-Seq ExpressionLag0039479
SyntenyLag0039479
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022156048.1 uncharacterized protein LOC111023016 [Momordica charantia]1.7e-5070.2Show/hide
Query:  KADPNPGGCCEVPHVRDAAGLDPRGQPAEELESVPLTSEERRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRR
        +A P+PG      H  ++  LD RG  AEE+ESVPLT EE+RVNIGTKLG E+R  L+ FLR+NAD+FAWS EDMP ID GVMVH+LNVD   KPVKQ+R
Subjt:  KADPNPGGCCEVPHVRDAAGLDPRGQPAEELESVPLTSEERRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRR

Query:  RAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCID
        RAFN ERNE+VA  V+ELLK GFIREVHYPQW+SNVVLVKK NGKWRMCID
Subjt:  RAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCID

XP_022156571.1 uncharacterized protein LOC111023448 [Momordica charantia]7.7e-4351.96Show/hide
Query:  ADPNPGGCCEVPHVRDAAGLDPRGQPAEELESVPLTSEERRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRR
        A P+PG      H  ++  LD RG+PAEE+ESVPLT+E+RRVNIGTKLG+E+R  L+ FLR+NAD+F WS EDMPGID GVMVH+LNVD   KPVKQ+RR
Subjt:  ADPNPGGCCEVPHVRDAAGLDPRGQPAEELESVPLTSEERRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRR

Query:  AFNSERNEVVASQVDELLKAGFIRE-----------------------------------VHYP-------------------QWLSNVVLVKKANGKWR
        AFN ERNE+VA QVDELL+ GFIRE                                   V  P                   QW+SNVVLVKK NGKWR
Subjt:  AFNSERNEVVASQVDELLKAGFIRE-----------------------------------VHYP-------------------QWLSNVVLVKKANGKWR

Query:  MCID
        MCID
Subjt:  MCID

XP_022158042.1 uncharacterized protein LOC111024621 [Momordica charantia]1.9e-4951.66Show/hide
Query:  MEKADPNPEG--CCEQKAPNQIEVGLG----MEKADPNP---------------------------GGCCEVPHVRDAAGLDPRGQPAEELESVPLTSEE
        M++ D NPEG  C E+++      GLG         PNP                           G  C  P    +  +  RG+P +E+ES+PLTS++
Subjt:  MEKADPNPEG--CCEQKAPNQIEVGLG----MEKADPNP---------------------------GGCCEVPHVRDAAGLDPRGQPAEELESVPLTSEE

Query:  RRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVK
        RRVNIGT+LG ++R  L+ FLR+N D+FAWSHEDMPGI+ G+MVHQLNV+   KPVKQ+ RAFN ERNE++A QV+ELLKAGFIREVHYPQW+SNVVL  
Subjt:  RRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVK

Query:  KANGKWRMCID
        K NGKWRMCID
Subjt:  KANGKWRMCID

XP_024035690.1 uncharacterized protein LOC112096473 [Citrus clementina]1.4e-3656.82Show/hide
Query:  DPRGQPAEELESVPLTSEE--RRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELL
        + RG PAE+L SV + +++  + V +G+ L  + R +L+GFLR N D+FAWSH DMPGI P +  H+LNVD   +PVKQ+RRAFN ER + +  +VD LL
Subjt:  DPRGQPAEELESVPLTSEE--RRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELL

Query:  KAGFIREVHYPQWLSNVVLVKKANGKWRMCID
         AGFIRE  YP+W+SNVVLVKK+NGKWRMC+D
Subjt:  KAGFIREVHYPQWLSNVVLVKKANGKWRMCID

XP_024045974.1 uncharacterized protein LOC112100756 [Citrus clementina]2.4e-3656.82Show/hide
Query:  DPRGQPAEELESVPLTSEE--RRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELL
        + RG PAE+L SV + +++  + V +G+ L  + R +L+GFLR N D+FAWSH DMPGI P +  H+LNVD   +PVKQ+RRAFN ER + +  +VD LL
Subjt:  DPRGQPAEELESVPLTSEE--RRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELL

Query:  KAGFIREVHYPQWLSNVVLVKKANGKWRMCID
         AGFIRE  YP W+SNVVLVKK+NGKWRMC+D
Subjt:  KAGFIREVHYPQWLSNVVLVKKANGKWRMCID

TrEMBL top hitse value%identityAlignment
A0A2N9ECS2 RNase H domain-containing protein1.1e-3964.06Show/hide
Query:  QPAEELESVPLT--SEERRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGF
        +P E+LE + LT  +E+RR  IGT + AE RG +V FLR NAD+FAWSHEDMPGI   VMVH+LNV+    PVKQ+RR F  ERNE V ++VD+LL AGF
Subjt:  QPAEELESVPLT--SEERRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGF

Query:  IREVHYPQWLSNVVLVKKANGKWRMCID
        IREV+YP+WL+NVV+VKK NGKWRMC+D
Subjt:  IREVHYPQWLSNVVLVKKANGKWRMCID

A0A2N9FDC4 Ribonuclease H1.5e-3963.28Show/hide
Query:  QPAEELESVPLT--SEERRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGF
        +P E+LE + LT  +E+RR  IGT + AE RG +V FLR NAD+FAWSHEDMPGI   VMVH+LNV+    PVKQ+RR F  ERNE + ++VD+LL AGF
Subjt:  QPAEELESVPLT--SEERRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGF

Query:  IREVHYPQWLSNVVLVKKANGKWRMCID
        IREV+YP+WL+NVV+VKK NGKWRMC+D
Subjt:  IREVHYPQWLSNVVLVKKANGKWRMCID

A0A6J1DPJ5 uncharacterized protein LOC1110230168.3e-5170.2Show/hide
Query:  KADPNPGGCCEVPHVRDAAGLDPRGQPAEELESVPLTSEERRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRR
        +A P+PG      H  ++  LD RG  AEE+ESVPLT EE+RVNIGTKLG E+R  L+ FLR+NAD+FAWS EDMP ID GVMVH+LNVD   KPVKQ+R
Subjt:  KADPNPGGCCEVPHVRDAAGLDPRGQPAEELESVPLTSEERRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRR

Query:  RAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCID
        RAFN ERNE+VA  V+ELLK GFIREVHYPQW+SNVVLVKK NGKWRMCID
Subjt:  RAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCID

A0A6J1DVC6 Ribonuclease H3.7e-4351.96Show/hide
Query:  ADPNPGGCCEVPHVRDAAGLDPRGQPAEELESVPLTSEERRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRR
        A P+PG      H  ++  LD RG+PAEE+ESVPLT+E+RRVNIGTKLG+E+R  L+ FLR+NAD+F WS EDMPGID GVMVH+LNVD   KPVKQ+RR
Subjt:  ADPNPGGCCEVPHVRDAAGLDPRGQPAEELESVPLTSEERRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRR

Query:  AFNSERNEVVASQVDELLKAGFIRE-----------------------------------VHYP-------------------QWLSNVVLVKKANGKWR
        AFN ERNE+VA QVDELL+ GFIRE                                   V  P                   QW+SNVVLVKK NGKWR
Subjt:  AFNSERNEVVASQVDELLKAGFIRE-----------------------------------VHYP-------------------QWLSNVVLVKKANGKWR

Query:  MCID
        MCID
Subjt:  MCID

A0A6J1DW49 uncharacterized protein LOC1110246219.2e-5051.66Show/hide
Query:  MEKADPNPEG--CCEQKAPNQIEVGLG----MEKADPNP---------------------------GGCCEVPHVRDAAGLDPRGQPAEELESVPLTSEE
        M++ D NPEG  C E+++      GLG         PNP                           G  C  P    +  +  RG+P +E+ES+PLTS++
Subjt:  MEKADPNPEG--CCEQKAPNQIEVGLG----MEKADPNP---------------------------GGCCEVPHVRDAAGLDPRGQPAEELESVPLTSEE

Query:  RRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVK
        RRVNIGT+LG ++R  L+ FLR+N D+FAWSHEDMPGI+ G+MVHQLNV+   KPVKQ+ RAFN ERNE++A QV+ELLKAGFIREVHYPQW+SNVVL  
Subjt:  RRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVK

Query:  KANGKWRMCID
        K NGKWRMCID
Subjt:  KANGKWRMCID

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGAATTTTGCTTAGGGAATTGCTCTTCGCTCCACGCAACGATCAGCAGTGAATTTGGTTTCGGCTGCTCGCCACCGGAGCGTTCGTGGGCCTTTGGCCCTGGTCG
GCCTCGGCATTGGGCCGAGGCCGACCACATGCTCGGCCTCTCCCTTAGGATGAGGCCGAGCGTCACATCTGGAGGGCCGGGTTGGGCTCCGGCCCTTCGGTCTTCTTCAC
CTTGGCCTCTTCTAGCTTCTGGGCCGATTCACCGGGGCCCATCCTGCACAAAATATCACAGAACGATTTCTGCCCATAACACAAGTTACTCTAAAACATGGGACCATAGA
CACAAATCTGAAAGTTCAGAGACTAAACTTGTGATTTTGGACCACACAGATGGACAAGGAGCTGACGAGGACAATCGGGCAGAGGTAGGACCGAAAGACCGACCCAGAGG
AAGACCGGACCAAAGGGTCGGGCCAATGGTCGGCCTCGGCCTTTTGCCGAGGCCGAGCATATGGTCGGCCTCGGCAAAAGGCCGAGGCCGACCATTCGGCCCGTTTGCGC
GGACCGAGCCCGATGACCTCTTTTCGGTCCCTGATGCCCCGAATAGCCCCGGTTTTGCCTGGTTCGCCCCGAAACACCACCGAATTCCTAAAAACCCTAGGAGGACAAAC
AGGCATCGGAGGCGGTGTGGCCTACACCACGCCGGTGTGCAGCGGTTTTTTGCTGGTCTTGCAGGTCACGTCTTCCCCAGTTTCTACAAATTCACTGTTGGTGTCACTTG
TCGCCGTCTGTGGGGAAGAGTGCTTGCCAATTCAGACCGTGCATCGGTGGTGTTCTGTAGGATGAATCGAGTTCAGAAACTAGAAGGAAACCTCGGGTATGAGCAGAAAA
CGGCGAACCAGACTGAGGTCGGCCTCGGTATGGAAAAGGCCGACCCTAACCCCGAAGGCTGTTGCGAGCAGAAAGCGCCGAATCAGATTGAGGTCGGCCTCGGTATGGAA
AAGGCCGACCCTAACCCCGGAGGCTGTTGCGAGGTTCCGCATGTCAGAGATGCTGCTGGACTTGACCCAAGGGGACAGCCCGCGGAGGAACTGGAATCTGTACCACTAAC
GTCTGAGGAAAGGAGAGTGAACATCGGCACCAAATTGGGGGCTGAGCAGAGGGGCAGACTGGTTGGTTTCTTGAGGGCTAACGCGGATCTGTTTGCGTGGTCACACGAGG
ATATGCCAGGAATTGACCCGGGAGTGATGGTTCACCAGTTGAATGTGGATAGGGATTTCAAGCCAGTAAAGCAGAGGCGAAGGGCATTTAACTCGGAGAGGAATGAGGTT
GTTGCCAGTCAAGTAGATGAGCTGCTTAAAGCAGGGTTCATCAGAGAAGTTCATTATCCCCAATGGTTGTCCAATGTGGTACTAGTAAAGAAGGCTAACGGGAAGTGGCG
GATGTGCATCGACCAGAGGAGGTCGAGGCCGACCAGGAACAATGGCTTTCTTTATGTTTACTTTACATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGAATTTTGCTTAGGGAATTGCTCTTCGCTCCACGCAACGATCAGCAGTGAATTTGGTTTCGGCTGCTCGCCACCGGAGCGTTCGTGGGCCTTTGGCCCTGGTCG
GCCTCGGCATTGGGCCGAGGCCGACCACATGCTCGGCCTCTCCCTTAGGATGAGGCCGAGCGTCACATCTGGAGGGCCGGGTTGGGCTCCGGCCCTTCGGTCTTCTTCAC
CTTGGCCTCTTCTAGCTTCTGGGCCGATTCACCGGGGCCCATCCTGCACAAAATATCACAGAACGATTTCTGCCCATAACACAAGTTACTCTAAAACATGGGACCATAGA
CACAAATCTGAAAGTTCAGAGACTAAACTTGTGATTTTGGACCACACAGATGGACAAGGAGCTGACGAGGACAATCGGGCAGAGGTAGGACCGAAAGACCGACCCAGAGG
AAGACCGGACCAAAGGGTCGGGCCAATGGTCGGCCTCGGCCTTTTGCCGAGGCCGAGCATATGGTCGGCCTCGGCAAAAGGCCGAGGCCGACCATTCGGCCCGTTTGCGC
GGACCGAGCCCGATGACCTCTTTTCGGTCCCTGATGCCCCGAATAGCCCCGGTTTTGCCTGGTTCGCCCCGAAACACCACCGAATTCCTAAAAACCCTAGGAGGACAAAC
AGGCATCGGAGGCGGTGTGGCCTACACCACGCCGGTGTGCAGCGGTTTTTTGCTGGTCTTGCAGGTCACGTCTTCCCCAGTTTCTACAAATTCACTGTTGGTGTCACTTG
TCGCCGTCTGTGGGGAAGAGTGCTTGCCAATTCAGACCGTGCATCGGTGGTGTTCTGTAGGATGAATCGAGTTCAGAAACTAGAAGGAAACCTCGGGTATGAGCAGAAAA
CGGCGAACCAGACTGAGGTCGGCCTCGGTATGGAAAAGGCCGACCCTAACCCCGAAGGCTGTTGCGAGCAGAAAGCGCCGAATCAGATTGAGGTCGGCCTCGGTATGGAA
AAGGCCGACCCTAACCCCGGAGGCTGTTGCGAGGTTCCGCATGTCAGAGATGCTGCTGGACTTGACCCAAGGGGACAGCCCGCGGAGGAACTGGAATCTGTACCACTAAC
GTCTGAGGAAAGGAGAGTGAACATCGGCACCAAATTGGGGGCTGAGCAGAGGGGCAGACTGGTTGGTTTCTTGAGGGCTAACGCGGATCTGTTTGCGTGGTCACACGAGG
ATATGCCAGGAATTGACCCGGGAGTGATGGTTCACCAGTTGAATGTGGATAGGGATTTCAAGCCAGTAAAGCAGAGGCGAAGGGCATTTAACTCGGAGAGGAATGAGGTT
GTTGCCAGTCAAGTAGATGAGCTGCTTAAAGCAGGGTTCATCAGAGAAGTTCATTATCCCCAATGGTTGTCCAATGTGGTACTAGTAAAGAAGGCTAACGGGAAGTGGCG
GATGTGCATCGACCAGAGGAGGTCGAGGCCGACCAGGAACAATGGCTTTCTTTATGTTTACTTTACATAG
Protein sequenceShow/hide protein sequence
MVEFCLGNCSSLHATISSEFGFGCSPPERSWAFGPGRPRHWAEADHMLGLSLRMRPSVTSGGPGWAPALRSSSPWPLLASGPIHRGPSCTKYHRTISAHNTSYSKTWDHR
HKSESSETKLVILDHTDGQGADEDNRAEVGPKDRPRGRPDQRVGPMVGLGLLPRPSIWSASAKGRGRPFGPFARTEPDDLFSVPDAPNSPGFAWFAPKHHRIPKNPRRTN
RHRRRCGLHHAGVQRFFAGLAGHVFPSFYKFTVGVTCRRLWGRVLANSDRASVVFCRMNRVQKLEGNLGYEQKTANQTEVGLGMEKADPNPEGCCEQKAPNQIEVGLGME
KADPNPGGCCEVPHVRDAAGLDPRGQPAEELESVPLTSEERRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEV
VASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDQRRSRPTRNNGFLYVYFT