; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0039484 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039484
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationchr2:44702533..44703981
RNA-Seq ExpressionLag0039484
SyntenyLag0039484
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN75040.1 hypothetical protein VITISV_026478 [Vitis vinifera]6.9e-2830.82Show/hide
Query:  KADYNDKDILEDYENISNSLVRAEKETKLTKVDRRVVKSIWSSRHVAWLSLDACNSAGGILLLWKENLVDVLNSFMRAFSITIQWLFQGQQEG--WISGV
        K +Y    I E+ E+       ++KETK    DRR V S+W  + V W +L AC ++GG ++LW  + ++       +FS+T++  F   +EG  W++ V
Subjt:  KADYNDKDILEDYENISNSLVRAEKETKLTKVDRRVVKSIWSSRHVAWLSLDACNSAGGILLLWKENLVDVLNSFMRAFSITIQWLFQGQQEG--WISGV

Query:  YGPCNYQDRKRFLLELYDLQGLCQGNWCVVGDFNLVRWVDERLNGINSSRSMKRFNRFIEKSEVIDLPMMN-----------------------------
        YGP N   RK F LEL DL GL    WCV GDFN++R + E+L     + +M+ F+ FI +S +ID P+ N                             
Subjt:  YGPCNYQDRKRFLLELYDLQGLCQGNWCVVGDFNLVRWVDERLNGINSSRSMKRFNRFIEKSEVIDLPMMN-----------------------------

Query:  -------------GYKVMEKLKRLKTHIRVWKKENLLKAGCKKKEILSQIDLIDRMEEQGSIRSLDIEDRKRLKRELLQLIINEKRSISQKS
                     G+K M KLK +K+ ++ W          +KK IL+ +  ID +E++G++ S  + +R   +REL  +++ E+    QKS
Subjt:  -------------GYKVMEKLKRLKTHIRVWKKENLLKAGCKKKEILSQIDLIDRMEEQGSIRSLDIEDRKRLKRELLQLIINEKRSISQKS

RVX11949.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]2.6e-2729.8Show/hide
Query:  ILEDYENISNSLVRAEKETKLTKVDRRVVKSIWSSRHVAWLSLDACNSAGGILLLWKENLVDVLNSFMRAFSITIQWLFQGQQEGWISGVYGPCNYQDRK
        +++D+  + N  V   +ETK    DRR V S+WS R+  W  L  C ++GGIL++W    +      + +FS+++++L  G    W+S VYGP N   RK
Subjt:  ILEDYENISNSLVRAEKETKLTKVDRRVVKSIWSSRHVAWLSLDACNSAGGILLLWKENLVDVLNSFMRAFSITIQWLFQGQQEGWISGVYGPCNYQDRK

Query:  RFLLELYDLQGLCQGNWCVVGDFNLVRWVDERLNGINSSRSMKRFNRFIEKSEVIDLPMMN---------------------------------------
         F +EL DL GL   +WCV GDFN++R   E+L G   + SM+ F+ FI +SE+ D P+ N                                       
Subjt:  RFLLELYDLQGLCQGNWCVVGDFNLVRWVDERLNGINSSRSMKRFNRFIEKSEVIDLPMMN---------------------------------------

Query:  -----------------------GYKVMEKLKRLKTHIRVWKKENLLKAGCKKKEILSQIDLIDRMEEQGSIRSLDIEDRKRLKRELLQLIINEKRSISQ
                               G+K M KL+ +K  ++ W K        +KK IL +I  ID +E++G++ S     R   K EL +LI+ E+    Q
Subjt:  -----------------------GYKVMEKLKRLKTHIRVWKKENLLKAGCKKKEILSQIDLIDRMEEQGSIRSLDIEDRKRLKRELLQLIINEKRSISQ

Query:  KS
        K+
Subjt:  KS

RVX14115.1 Protein SWEETIE [Vitis vinifera]5.9e-2729.23Show/hide
Query:  KETKLTKVDRRVVKSIWSSRHVAWLSLDACNSAGGILLLWKENLVDVLNSFMRAFSITIQWLFQGQQEGWISGVYGPCNYQDRKRFLLELYDLQGLCQGN
        +ETK  + DRR V S+W++R+  W +L  C ++GGIL++W    +      + +FS++I++   G +  W+S VYGP     RK F +EL D+ GL    
Subjt:  KETKLTKVDRRVVKSIWSSRHVAWLSLDACNSAGGILLLWKENLVDVLNSFMRAFSITIQWLFQGQQEGWISGVYGPCNYQDRKRFLLELYDLQGLCQGN

Query:  WCVVGDFNLVRWVDERLNGINSSRSMKRFNRFIEKSEVIDLPMMN-------------------------------------------------------
        WCV GDFN++R   E+L G   + SMK F+ FI   E+IDLP+ +                                                       
Subjt:  WCVVGDFNLVRWVDERLNGINSSRSMKRFNRFIEKSEVIDLPMMN-------------------------------------------------------

Query:  -----GYKVMEKLKRLKTHIRVWKKENLLKAGCKKKEILSQIDLIDRMEEQGSIRSLDIEDRKRLKRELLQLIINEKRSISQKS
             G+K M KL+ +K  ++VW K +  +   +K++ILS +   D +E++G +    +  R   K EL +LI+ E+    QK+
Subjt:  -----GYKVMEKLKRLKTHIRVWKKENLLKAGCKKKEILSQIDLIDRMEEQGSIRSLDIEDRKRLKRELLQLIINEKRSISQKS

XP_021820446.1 uncharacterized protein LOC110762145 [Prunus avium]2.0e-2740.69Show/hide
Query:  KETKLTKVDRRVVKSIWSSRHVAWLSLDACNSAGGILLLWKENLVDVLNSFMRAFSITIQWLFQGQQEGWISGVYGPCNYQDRKRFLLELYDLQGLCQGN
        +ETK  ++DRR+V S+W SR   W+ + +   +GGI+++W    V V++S +  FS++I+       + W+SG+YGPC  +DR RF +EL  L GLC  N
Subjt:  KETKLTKVDRRVVKSIWSSRHVAWLSLDACNSAGGILLLWKENLVDVLNSFMRAFSITIQWLFQGQQEGWISGVYGPCNYQDRKRFLLELYDLQGLCQGN

Query:  WCVVGDFNLVRWVDERLNGINSSRSMKRFNRFIEKSEVIDLPMMN
        WC+ GDFN+VR+V ++ NG   + SM+ FN FI  + + D  ++N
Subjt:  WCVVGDFNLVRWVDERLNGINSSRSMKRFNRFIEKSEVIDLPMMN

XP_031739979.1 uncharacterized protein LOC116403332 [Cucumis sativus]1.0e-3447.95Show/hide
Query:  KETKLTKVDRRVVKSIWSSRHVAWLSLDACNSAGGILLLWKENLVDVLNSFMRAFSITIQWLFQGQQEGWISGVYGPCNYQDRKRFLLELYDLQGLCQGN
        +++K++ V+R +VKS+WSS  V W +L+A  S+GGIL+LWKE+ + V++S    FSI+I W F     GWI+GVYGP +Y+ R +F  EL  L GLC  N
Subjt:  KETKLTKVDRRVVKSIWSSRHVAWLSLDACNSAGGILLLWKENLVDVLNSFMRAFSITIQWLFQGQQEGWISGVYGPCNYQDRKRFLLELYDLQGLCQGN

Query:  WCVVGDFNLVRWVDERLNGINSSRSMKRFNRFIEKSEVIDLPMMNG
        WCV GDFN+VRW++E+ +    +RSM RF   IE+ +++D+P  NG
Subjt:  WCVVGDFNLVRWVDERLNGINSSRSMKRFNRFIEKSEVIDLPMMNG

TrEMBL top hitse value%identityAlignment
A0A6P5T1U8 uncharacterized protein LOC1107621459.7e-2840.69Show/hide
Query:  KETKLTKVDRRVVKSIWSSRHVAWLSLDACNSAGGILLLWKENLVDVLNSFMRAFSITIQWLFQGQQEGWISGVYGPCNYQDRKRFLLELYDLQGLCQGN
        +ETK  ++DRR+V S+W SR   W+ + +   +GGI+++W    V V++S +  FS++I+       + W+SG+YGPC  +DR RF +EL  L GLC  N
Subjt:  KETKLTKVDRRVVKSIWSSRHVAWLSLDACNSAGGILLLWKENLVDVLNSFMRAFSITIQWLFQGQQEGWISGVYGPCNYQDRKRFLLELYDLQGLCQGN

Query:  WCVVGDFNLVRWVDERLNGINSSRSMKRFNRFIEKSEVIDLPMMN
        WC+ GDFN+VR+V ++ NG   + SM+ FN FI  + + D  ++N
Subjt:  WCVVGDFNLVRWVDERLNGINSSRSMKRFNRFIEKSEVIDLPMMN

A0A803P8A0 Uncharacterized protein2.0e-2844.52Show/hide
Query:  KETKLTKVDRRVVKSIWSSRHVAWLSLDACNSAGGILLLWKENLVDVLNSFMRAFSITIQWLFQGQQEGWISGVYGPCNYQDRKRFLLELYDLQGLCQGN
        +E K   VDRR + SIW SR  AW+ L A   +GG LL+W   ++ VL+S +  FSI++    +G++  W SGVYGPC+Y+ R  F  EL  L  +C  +
Subjt:  KETKLTKVDRRVVKSIWSSRHVAWLSLDACNSAGGILLLWKENLVDVLNSFMRAFSITIQWLFQGQQEGWISGVYGPCNYQDRKRFLLELYDLQGLCQGN

Query:  WCVVGDFNLVRWVDERLNGINSSRSMKRFNRFIEKSEVIDLPMMNG
        WCV GDFN+ R V E+LN  +S+RSMK F+  I + ++ID  + NG
Subjt:  WCVVGDFNLVRWVDERLNGINSSRSMKRFNRFIEKSEVIDLPMMNG

A0A803QEA6 Uncharacterized protein9.7e-2843.15Show/hide
Query:  KETKLTKVDRRVVKSIWSSRHVAWLSLDACNSAGGILLLWKENLVDVLNSFMRAFSITIQWLFQGQQEGWISGVYGPCNYQDRKRFLLELYDLQGLCQGN
        +E K   VDRR + SIW SR  AW+ + A   +GG LL+W    + VL+S +  FSI++    +G++  W SGVYGPC+Y+ R  F  EL  L  +C  +
Subjt:  KETKLTKVDRRVVKSIWSSRHVAWLSLDACNSAGGILLLWKENLVDVLNSFMRAFSITIQWLFQGQQEGWISGVYGPCNYQDRKRFLLELYDLQGLCQGN

Query:  WCVVGDFNLVRWVDERLNGINSSRSMKRFNRFIEKSEVIDLPMMNG
        WCV GDFN+ R V E+LN  + +RSMK F+  I + ++ID  + NG
Subjt:  WCVVGDFNLVRWVDERLNGINSSRSMKRFNRFIEKSEVIDLPMMNG

A0A803QQM3 Uncharacterized protein9.7e-2843.84Show/hide
Query:  KETKLTKVDRRVVKSIWSSRHVAWLSLDACNSAGGILLLWKENLVDVLNSFMRAFSITIQWLFQGQQEGWISGVYGPCNYQDRKRFLLELYDLQGLCQGN
        +E K   VDRR + SIW SR  AW+ L A   +GG LL+W    + VL+S +  FSI++    +G++  W SGVYGPC+Y+ R  F  EL  L  +C  +
Subjt:  KETKLTKVDRRVVKSIWSSRHVAWLSLDACNSAGGILLLWKENLVDVLNSFMRAFSITIQWLFQGQQEGWISGVYGPCNYQDRKRFLLELYDLQGLCQGN

Query:  WCVVGDFNLVRWVDERLNGINSSRSMKRFNRFIEKSEVIDLPMMNG
        WCV GDFN+ R V E+LN  + +RSMK F+  I + ++ID  + NG
Subjt:  WCVVGDFNLVRWVDERLNGINSSRSMKRFNRFIEKSEVIDLPMMNG

A5BV95 Reverse transcriptase domain-containing protein3.4e-2830.82Show/hide
Query:  KADYNDKDILEDYENISNSLVRAEKETKLTKVDRRVVKSIWSSRHVAWLSLDACNSAGGILLLWKENLVDVLNSFMRAFSITIQWLFQGQQEG--WISGV
        K +Y    I E+ E+       ++KETK    DRR V S+W  + V W +L AC ++GG ++LW  + ++       +FS+T++  F   +EG  W++ V
Subjt:  KADYNDKDILEDYENISNSLVRAEKETKLTKVDRRVVKSIWSSRHVAWLSLDACNSAGGILLLWKENLVDVLNSFMRAFSITIQWLFQGQQEG--WISGV

Query:  YGPCNYQDRKRFLLELYDLQGLCQGNWCVVGDFNLVRWVDERLNGINSSRSMKRFNRFIEKSEVIDLPMMN-----------------------------
        YGP N   RK F LEL DL GL    WCV GDFN++R + E+L     + +M+ F+ FI +S +ID P+ N                             
Subjt:  YGPCNYQDRKRFLLELYDLQGLCQGNWCVVGDFNLVRWVDERLNGINSSRSMKRFNRFIEKSEVIDLPMMN-----------------------------

Query:  -------------GYKVMEKLKRLKTHIRVWKKENLLKAGCKKKEILSQIDLIDRMEEQGSIRSLDIEDRKRLKRELLQLIINEKRSISQKS
                     G+K M KLK +K+ ++ W          +KK IL+ +  ID +E++G++ S  + +R   +REL  +++ E+    QKS
Subjt:  -------------GYKVMEKLKRLKTHIRVWKKENLLKAGCKKKEILSQIDLIDRMEEQGSIRSLDIEDRKRLKRELLQLIINEKRSISQKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGAGCCTCCTCAGAACTTGGGAAAGAAAAGCTGAAGACTCCATCGATAAGGAAGAAAAGGCAGATTACAACGATAAGGATATTTTAGAAGATTATGAGAATATATC
CAATAGTTTAGTCAGGGCCGAAAAAGAGACTAAGCTTACTAAGGTTGATAGGAGAGTAGTTAAGTCTATTTGGAGCTCTAGGCATGTGGCGTGGCTGTCCCTAGATGCTT
GTAACTCAGCTGGGGGTATCTTGTTGTTGTGGAAAGAGAATTTGGTGGACGTGCTTAACTCGTTCATGAGGGCCTTCTCTATTACTATACAATGGTTATTTCAAGGACAG
CAAGAAGGCTGGATCTCTGGAGTTTATGGCCCGTGTAACTATCAGGATAGAAAGCGCTTCCTCTTAGAGCTGTATGACCTACAAGGCTTGTGCCAAGGTAATTGGTGTGT
GGTGGGGGACTTCAATCTGGTTAGATGGGTGGATGAAAGATTGAATGGAATCAATTCCTCTAGAAGTATGAAGCGGTTTAACAGATTTATTGAGAAGTCGGAAGTTATTG
ATTTACCCATGATGAATGGCTACAAAGTTATGGAAAAACTGAAGCGATTAAAGACTCACATTAGAGTTTGGAAGAAGGAAAATCTCTTGAAGGCAGGATGTAAGAAAAAG
GAAATTTTGAGCCAAATTGACCTTATTGACCGAATGGAGGAACAAGGCAGTATTAGGAGTCTTGACATTGAGGATCGAAAACGCCTTAAAAGGGAGCTGCTTCAGCTGAT
TATTAATGAGAAAAGAAGCATTAGTCAGAAATCAAGTACAAATCTGGGAATTTGTCATGGAGAGGTTGATCAGCTTACCATATATCCTCCCAAAATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACGAGCCTCCTCAGAACTTGGGAAAGAAAAGCTGAAGACTCCATCGATAAGGAAGAAAAGGCAGATTACAACGATAAGGATATTTTAGAAGATTATGAGAATATATC
CAATAGTTTAGTCAGGGCCGAAAAAGAGACTAAGCTTACTAAGGTTGATAGGAGAGTAGTTAAGTCTATTTGGAGCTCTAGGCATGTGGCGTGGCTGTCCCTAGATGCTT
GTAACTCAGCTGGGGGTATCTTGTTGTTGTGGAAAGAGAATTTGGTGGACGTGCTTAACTCGTTCATGAGGGCCTTCTCTATTACTATACAATGGTTATTTCAAGGACAG
CAAGAAGGCTGGATCTCTGGAGTTTATGGCCCGTGTAACTATCAGGATAGAAAGCGCTTCCTCTTAGAGCTGTATGACCTACAAGGCTTGTGCCAAGGTAATTGGTGTGT
GGTGGGGGACTTCAATCTGGTTAGATGGGTGGATGAAAGATTGAATGGAATCAATTCCTCTAGAAGTATGAAGCGGTTTAACAGATTTATTGAGAAGTCGGAAGTTATTG
ATTTACCCATGATGAATGGCTACAAAGTTATGGAAAAACTGAAGCGATTAAAGACTCACATTAGAGTTTGGAAGAAGGAAAATCTCTTGAAGGCAGGATGTAAGAAAAAG
GAAATTTTGAGCCAAATTGACCTTATTGACCGAATGGAGGAACAAGGCAGTATTAGGAGTCTTGACATTGAGGATCGAAAACGCCTTAAAAGGGAGCTGCTTCAGCTGAT
TATTAATGAGAAAAGAAGCATTAGTCAGAAATCAAGTACAAATCTGGGAATTTGTCATGGAGAGGTTGATCAGCTTACCATATATCCTCCCAAAATCTAA
Protein sequenceShow/hide protein sequence
MTSLLRTWERKAEDSIDKEEKADYNDKDILEDYENISNSLVRAEKETKLTKVDRRVVKSIWSSRHVAWLSLDACNSAGGILLLWKENLVDVLNSFMRAFSITIQWLFQGQ
QEGWISGVYGPCNYQDRKRFLLELYDLQGLCQGNWCVVGDFNLVRWVDERLNGINSSRSMKRFNRFIEKSEVIDLPMMNGYKVMEKLKRLKTHIRVWKKENLLKAGCKKK
EILSQIDLIDRMEEQGSIRSLDIEDRKRLKRELLQLIINEKRSISQKSSTNLGICHGEVDQLTIYPPKI