CuGenDBv2

Gene ID	Lag0039487
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrotran_gag_3 domain-containing protein
Genome location	chr2:44747682..44748101
RNA-Seq Expression	Lag0039487
Synteny	Lag0039487
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR029472 - Retrotransposon Copia-like, N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0049700.1 T4.5 [Cucumis melo var. makuwa]

5.9e-25

64.52

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Query:  KDLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVFSTESSSTDSATSTVNPSYGDWLAKDQALMTLIN
        KD  SP+FLLSNICNLIS+RLDS+N+VLWKFQ T++L+AHKL+GF+DG++P PP+T       SSST +     NPSY DW+AKDQALMT+IN
Subjt:  KDLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVFSTESSSTDSATSTVNPSYGDWLAKDQALMTLIN

XP_008448007.1 PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]

5.9e-25

64.52

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Query:  KDLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVFSTESSSTDSATSTVNPSYGDWLAKDQALMTLIN
        KD  SP+FLLSNICNLIS+RLDS+N+VLWKFQ T++L+AHKL+GF+DG++P PP+T       SSST +     NPSY DW+AKDQALMT+IN
Subjt:  KDLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVFSTESSSTDSATSTVNPSYGDWLAKDQALMTLIN

XP_008448008.1 PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]

5.9e-25

64.52

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Query:  KDLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVFSTESSSTDSATSTVNPSYGDWLAKDQALMTLIN
        KD  SP+FLLSNICNLIS+RLDS+N+VLWKFQ T++L+AHKL+GF+DG++P PP+T       SSST +     NPSY DW+AKDQALMT+IN
Subjt:  KDLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVFSTESSSTDSATSTVNPSYGDWLAKDQALMTLIN

XP_016900446.1 PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo]

5.9e-25

64.52

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Query:  KDLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVFSTESSSTDSATSTVNPSYGDWLAKDQALMTLIN
        KD  SP+FLLSNICNLIS+RLDS+N+VLWKFQ T++L+AHKL+GF+DG++P PP+T       SSST +     NPSY DW+AKDQALMT+IN
Subjt:  KDLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVFSTESSSTDSATSTVNPSYGDWLAKDQALMTLIN

XP_022150845.1 uncharacterized protein LOC111018892 [Momordica charantia]

2.2e-24

63.16

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Query:  KDLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVFSTESSSTDSATS--TVNPSYGDWLAKDQALMTLIN
        KDLHSP+FLLSNICNL+SIRLDS++++LWKFQ T++L+AHKLFGF+DGS  AP + L   S   S   + TS   +NP + DW+AKDQALMTLIN
Subjt:  KDLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVFSTESSSTDSATS--TVNPSYGDWLAKDQALMTLIN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BI58 uncharacterized protein LOC103490319 isoform X2

2.8e-25

64.52

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Query:  KDLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVFSTESSSTDSATSTVNPSYGDWLAKDQALMTLIN
        KD  SP+FLLSNICNLIS+RLDS+N+VLWKFQ T++L+AHKL+GF+DG++P PP+T       SSST +     NPSY DW+AKDQALMT+IN
Subjt:  KDLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVFSTESSSTDSATSTVNPSYGDWLAKDQALMTLIN

A0A1S3BIR3 uncharacterized protein LOC103490319 isoform X3

2.8e-25

64.52

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Query:  KDLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVFSTESSSTDSATSTVNPSYGDWLAKDQALMTLIN
        KD  SP+FLLSNICNLIS+RLDS+N+VLWKFQ T++L+AHKL+GF+DG++P PP+T       SSST +     NPSY DW+AKDQALMT+IN
Subjt:  KDLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVFSTESSSTDSATSTVNPSYGDWLAKDQALMTLIN

A0A1S4DWT9 uncharacterized protein LOC103490319 isoform X1

2.8e-25

64.52

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Query:  KDLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVFSTESSSTDSATSTVNPSYGDWLAKDQALMTLIN
        KD  SP+FLLSNICNLIS+RLDS+N+VLWKFQ T++L+AHKL+GF+DG++P PP+T       SSST +     NPSY DW+AKDQALMT+IN
Subjt:  KDLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVFSTESSSTDSATSTVNPSYGDWLAKDQALMTLIN

A0A5D3CLI6 T4.5

2.8e-25

64.52

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Query:  KDLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVFSTESSSTDSATSTVNPSYGDWLAKDQALMTLIN
        KD  SP+FLLSNICNLIS+RLDS+N+VLWKFQ T++L+AHKL+GF+DG++P PP+T       SSST +     NPSY DW+AKDQALMT+IN
Subjt:  KDLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVFSTESSSTDSATSTVNPSYGDWLAKDQALMTLIN

A0A6J1D9L6 uncharacterized protein LOC111018892

1.1e-24

63.16

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Query:  KDLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVFSTESSSTDSATS--TVNPSYGDWLAKDQALMTLIN
        KDLHSP+FLLSNICNL+SIRLDS++++LWKFQ T++L+AHKLFGF+DGS  AP + L   S   S   + TS   +NP + DW+AKDQALMTLIN
Subjt:  KDLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVFSTESSSTDSATS--TVNPSYGDWLAKDQALMTLIN

SwissProt top hits

e value

%identity

Alignment

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

5.4e-05

35.62

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Query:  RLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVFSTESSSTDSATSTVNPSYGDWLAKDQALMTLI
        +L S+NY++W  Q  ++   ++L GF+DGS P PP T+         TD A   VNP Y  W  +D+ + + I
Subjt:  RLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVFSTESSSTDSATSTVNPSYGDWLAKDQALMTLI

Arabidopsis top hits

e value

%identity

Alignment

AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

2.5e-05

37.29

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Query:  DLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVF
        D+H P     +  ++  +  D  NYV WK +F S LR  K FGF+DG+ P P    P++
Subjt:  DLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVF

Sequences

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CDS sequence

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ATGGCTTCTTTTGAGGTTTCTCTCAAAGATCTTCATTCTCCGATGTTTCTTCTGTCAAATATTTGCAATTTGATCTCGATACGGCTGGATTCTTCAAACTATGTCTTGTG
GAAGTTTCAATTCACTTCTATGTTGCGTGCACATAAACTTTTTGGTTTTGTTGATGGATCGCATCCTGCTCCTCCAAAAACTCTTCCGGTTTTTTCTACTGAGAGTTCTT
CAACCGATTCTGCTACATCTACTGTTAATCCATCGTATGGAGACTGGTTGGCCAAAGATCAAGCGCTTATGACCTTAATTAATCAATGCTACACTGTCTCCAGAAGCCTT
GGCATATATCGTTGGCTGCAATTCTTCTCAAGAGGAATGGGAAGCCCTAGAGAAACATTACTCTTCTTCTTCGAGGACAAATATTGTTAA

mRNA sequence

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Protein sequence

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MASFEVSLKDLHSPMFLLSNICNLISIRLDSSNYVLWKFQFTSMLRAHKLFGFVDGSHPAPPKTLPVFSTESSSTDSATSTVNPSYGDWLAKDQALMTLINQCYTVSRSL
GIYRWLQFFSRGMGSPRETLLFFFEDKYC

Lag0039487 (gene) of Sponge gourd (AG-4) v1 genome