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Lag0039490 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0039490
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionHistone deacetylase
Genome locationchr2:44779736..44780415
RNA-Seq ExpressionLag0039490
SyntenyLag0039490
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB1321336.1 unnamed protein product, partial [Coregonus sp. 'balchen']8.8e-0430.43Show/hide
Query:  LLIFSDDRF-------DDRSADLLIFLDDRPVGLLIFLDDRSADLLIL-SDDRFDDRSADLLIFLDDRPVGLLILLDDRPVGLLIFLDDRFDDRSADLLI
        +L+F  D          D    +L+F  D  VG+L+F  D    +L+  SD+   D    +L+F  D  VG+L+   D   G+L+F  D        +L+
Subjt:  LLIFSDDRF-------DDRSADLLIFLDDRPVGLLIFLDDRSADLLIL-SDDRFDDRSADLLIFLDDRPVGLLILLDDRPVGLLIFLDDRFDDRSADLLI

Query:  FLDDRPVGLLIFLDD
        F  D  VG+L+F  D
Subjt:  FLDDRPVGLLIFLDD

HIT71138.1 hypothetical protein [Candidatus Scatovivens faecipullorum]6.1e-0546Show/hide
Query:  TSTDLLIFSDDRFDDRSADLLIFLDDRPVGLLIFLDDRSADLLILSDDRFDDRSADLLIFLDDRPVGLLILLDDRPVGLLIFLDDRFDDRSADLLIFLDD
        TS D+L   DD FDD S D+L  LDD         DD S D+L   DD FDD S D+L  LDD         DD    +L  LDD FDD S D L  LDD
Subjt:  TSTDLLIFSDDRFDDRSADLLIFLDDRPVGLLIFLDDRSADLLILSDDRFDDRSADLLIFLDDRPVGLLILLDDRPVGLLIFLDDRFDDRSADLLIFLDD

WP_207114037.1 hypothetical protein [Enterococcus hulanensis]8.0e-0543.8Show/hide
Query:  TSTDLLIFSDDRFDDRSADLLI--FLDDRPVGLLIFLDDRSADLLILSDDRFDDRSADLLIFL---DDRPVGLLILL-----DDRPVGLLIFLDDRFDDR
        +S +LL+ S    DD S +LL+   LDD  V LL+  DD S +LL+L     DD S +LL+ L   DD  V LL+LL     DD  V LL+ L D  DD 
Subjt:  TSTDLLIFSDDRFDDRSADLLI--FLDDRPVGLLIFLDDRSADLLILSDDRFDDRSADLLIFL---DDRPVGLLILL-----DDRPVGLLIFLDDRFDDR

Query:  SADLLIFL--DDRPVGLLIFL
        S +LL+ L  DD  V LL+ L
Subjt:  SADLLIFL--DDRPVGLLIFL

WP_217833387.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]2.4e-0971.7Show/hide
Query:  IFLDDRPVGLLILLDDRPVGLLIFLDDRFDDRSADLLIFLDDRPVGLLIFLDD
        IFLDDRP+GLLI LDDRP+GL+IF    F DR   LL  LDDRP+GLLIFLDD
Subjt:  IFLDDRPVGLLILLDDRPVGLLIFLDDRFDDRSADLLIFLDDRPVGLLIFLDD

XP_013783717.1 late embryogenesis abundant protein 76-like [Limulus polyphemus]1.9e-0630.53Show/hide
Query:  STDLLIFSDDR-------FDDRSADLLIFLDDRPVGLLIFLDDRSADLLILSDDR-------FDDRSADLLIFLDDRPVGLLILLDDRPVGLLIFLDDR-
        S++L  F +D+        +D+S++L  FL+D+   L  FL+D+S +L    +D+        +D S++L  FL+D+   L   L+D+   L  FL+D+ 
Subjt:  STDLLIFSDDR-------FDDRSADLLIFLDDRPVGLLIFLDDRSADLLILSDDR-------FDDRSADLLIFLDDRPVGLLILLDDRPVGLLIFLDDR-

Query:  ------FDDRSADLLIFLDDRPVGLLIFLDD
               +D+S++L  FL+D+   L+ FL+D
Subjt:  ------FDDRSADLLIFLDDRPVGLLIFLDD

TrEMBL top hitse value%identityAlignment
A0A674B7D6 Histone deacetylase3.5e-0629.01Show/hide
Query:  STDLLIFSDDR-------FDDRSADLLIFLDDRPVGLLIFLDDRSADLLILSDDR-------FDDRSADLLIFLDDRPVGLLILLDDRPVGLLIFLDDR-
        S + L+  DD         DD S + L  +DD  +  L+ +DD S + L + DD         DD S + L+ +DD  +  L+++DD  +  L  +DD  
Subjt:  STDLLIFSDDR-------FDDRSADLLIFLDDRPVGLLIFLDDRSADLLILSDDR-------FDDRSADLLIFLDDRPVGLLILLDDRPVGLLIFLDDR-

Query:  ------FDDRSADLLIFLDDRPVGLLIFLDD
               DD S + L  +DD  +  L+ +DD
Subjt:  ------FDDRSADLLIFLDDRPVGLLIFLDD

A0A6F9AD32 Uncharacterized protein (Fragment)4.3e-0430.43Show/hide
Query:  LLIFSDDRF-------DDRSADLLIFLDDRPVGLLIFLDDRSADLLIL-SDDRFDDRSADLLIFLDDRPVGLLILLDDRPVGLLIFLDDRFDDRSADLLI
        +L+F  D          D    +L+F  D  VG+L+F  D    +L+  SD+   D    +L+F  D  VG+L+   D   G+L+F  D        +L+
Subjt:  LLIFSDDRF-------DDRSADLLIFLDDRPVGLLIFLDDRSADLLIL-SDDRFDDRSADLLIFLDDRPVGLLILLDDRPVGLLIFLDDRFDDRSADLLI

Query:  FLDDRPVGLLIFLDD
        F  D  VG+L+F  D
Subjt:  FLDDRPVGLLIFLDD

A0A7X8Y9I4 Uncharacterized protein9.5e-0437.11Show/hide
Query:  DDRSADLLIFLDDRPVGLLIFLDDRSADLLILSDDR-------FDDRSADLLIFLDDRPVGLLILLDDRPVGLLIFLDDR-------FDDRSADLLI
        D+R+A+L   LDDR   L   LD+R+A+L    D+R         DR+A+L   LD+R   L   LDDR  GL  ++D+R        D+R+A+L +
Subjt:  DDRSADLLIFLDDRPVGLLIFLDDRSADLLILSDDR-------FDDRSADLLIFLDDRPVGLLILLDDRPVGLLIFLDDR-------FDDRSADLLI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCCAAGACAAACCTGGCATTTTTTTTTTCCCGAAAACTTGACCTCTACTGACTTGTTGATCTTCTCGGATGATCGGTTTGATGATCGGTCTGCTGACTTGTTGAT
CTTCTTGGATGATCGGCCTGTTGGCTTGTTGATCTTCTTGGATGATCGGTCTGCTGACTTGTTGATCTTGTCGGATGATCGGTTTGATGATCGGTCTGCTGACTTGTTGA
TCTTCTTGGATGATCGGCCTGTTGGCTTGTTGATCTTATTGGATGATCGGCCTGTTGGCTTGTTGATCTTCTTGGATGATCGGTTTGATGATCGGTCTGCTGACTTGTTG
ATCTTCTTGGATGATCGACCTGTTGGCTTGTTGATCTTCTTAGATGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCCAAGACAAACCTGGCATTTTTTTTTTCCCGAAAACTTGACCTCTACTGACTTGTTGATCTTCTCGGATGATCGGTTTGATGATCGGTCTGCTGACTTGTTGAT
CTTCTTGGATGATCGGCCTGTTGGCTTGTTGATCTTCTTGGATGATCGGTCTGCTGACTTGTTGATCTTGTCGGATGATCGGTTTGATGATCGGTCTGCTGACTTGTTGA
TCTTCTTGGATGATCGGCCTGTTGGCTTGTTGATCTTATTGGATGATCGGCCTGTTGGCTTGTTGATCTTCTTGGATGATCGGTTTGATGATCGGTCTGCTGACTTGTTG
ATCTTCTTGGATGATCGACCTGTTGGCTTGTTGATCTTCTTAGATGATTGA
Protein sequenceShow/hide protein sequence
MEPRQTWHFFFPENLTSTDLLIFSDDRFDDRSADLLIFLDDRPVGLLIFLDDRSADLLILSDDRFDDRSADLLIFLDDRPVGLLILLDDRPVGLLIFLDDRFDDRSADLL
IFLDDRPVGLLIFLDD